Contig 001361:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF002J11+                            AAAAAAAGTACAACGAACTTTTAGTTTTCAAAACCCAATTTT
rJMSF022O03+                                      CAACGAACTTTTAGTTTTCAAAACCCAATTTT
                      ____________________________________________________________
consensus                               AAAAAAAGTACAACGAACTTTTAGTTTTCAAAACCCAATTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF002J11+          CAGTATTGATTTAAGTAAATGACAGTCTCAATGATGATAACAATCTTCAAATCTCACACA
rJMSF022O03+          CAGTATTGATTTAAGTAAATGACAGTCTCAATGATGATAACAATCTTCAAATCTCACACA
                      ____________________________________________________________
consensus             CAGTATTGATTTAAGTAAATGACAGTCTCAATGATGATAACAATCTTCAAATCTCACACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF002J11+          TAAAAACATCTTNTCAAAAATAAGTGTAGAATTGAAAAGGATTTTGTGAACAAATCTGCT
rJMSF022O03+          TAAAAACATCTTTTCAAAAATAAGTGTAGAATTGAAAAGGATTTTGTGAACAAATCTGCT
                      ____________________________________________________________
consensus             TAAAAACATCTTTTCAAAAATAAGTGTAGAATTGAAAAGGATTTTGTGAACAAATCTGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF002J11+          AGATTATCNCTAGAGCGAATATTCTGTAATATTATCTTGTGACTATTCTAAACTCACGTG
rJMSF022O03+          AGATTATCACTAGAGCGAATATTCTGTAATATTATCTTGTGACTATTCTAAACTCACGTG
                      ____________________________________________________________
consensus             AGATTATCACTAGAGCGAATATTCTGTAATATTATCTTGTGACTATTCTAAACTCACGTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF002J11+          GGTTGATTTTTGACACTATATATATTAGTGAGGTCAGTGGGACTGGGAGGAAGCCTTATC
rJMSF022O03+          GGTTGATTTTTGACACTATATATATTAGTGAGGTCAGTGGGACTGGGAGGAAGCCTTATC
                      ____________________________________________________________
consensus             GGTTGATTTTTGACACTATATATATTAGTGAGGTCAGTGGGACTGGGAGGAAGCCTTATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF002J11+          CGCAGAAGGGTACAGGTCGAGCAAGGCATGGGACACTCCGTGGCCCTCAGTTTCGTGGCG
rJMSF022O03+          CGCAGAAGGGTACAGGTCGAGCAAGGCATGGGACACTCCGTGGCCCTCAGTTTCGTGGCG
                      ____________________________________________________________
consensus             CGCAGAAGGGTACAGGTCGAGCAAGGCATGGGACACTCCGTGGCCCTCAGTTTCGTGGCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF002J11+          GTACAGCTATGCATGTTCCAAAGCCCCGAAGTCATGCTACTATCAAGNTGAACAAGAAGG
rJMSF022O03+          GTACAGCTATGCATGTTCCAAAGCCCCGAAGTCATGCTACTATCAAGCTGAACAAGAAGG
                      ____________________________________________________________
consensus             GTACAGCTATGCATGTTCCAAAGCCCCGAAGTCATGCTACTATCAAGCTGAACAAGAAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF002J11+          TTTGTCGACTTGGCTTGAAGCTAGATTGCTTTGTCAGCTCGTGCAGCAGAGGGAAAGNTC
rJMSF022O03+          TTTGTCGACTTGGCTTGAAGCTAGATTGCTTTGTCAGCTCGTGCAGCAGAGGGAAAGCTC
                      ____________________________________________________________
consensus             TTTGTCGACTTGGCTTGAAGCTAGATTGCTTTGTCAGCTCGTGCAGCAGAGGGAAAGCTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF002J11+          ATGGTTTNTGAGGATANGGAACTACCNTNTCACACAAAACCAAGAACATTGTAANCTATG
rJMSF022O03+          ATGGTTTTTGAGGATATGGAACTACCTTCTCACACAAAACCAAGAACATTGTAAGCTATG
                      ____________________________________________________________
consensus             ATGGTTTTTGAGGATATGGAACTACCTTCTCACACAAAACCAAGAACATTGTAAGCTATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF002J11+          GCCAGAAAATGGAGAATGCCA                                       
rJMSF022O03+          GCCAGAAAATGGAGAATGCCAAAAAAGTTTTGCTTGTTGATGGTGGCCCTCAACGAAAAC
                      ____________________________________________________________
consensus             GCCAGAAAATGGAGAATGCCAAAAAAGTTTTGCTTGTTGATGGTGGCCCTCAACGAAAAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF022O03+          CTCAAGTTGGCCACTCAAAATATACATTATGGCAACGTTTTGCCTTCTATTGTAAGTATT
                      ____________________________________________________________
consensus             CTCAAGTTGGCCACTCAAAATATACATTATGGCAACGTTTTGCCTTCTATTGTAAGTATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF022O03+          AGAACTACATCGGTATCTTTGATGGTTTATACACACTTGTCTGCACTTGATACTTGGCTA
                      ____________________________________________________________
consensus             AGAACTACATCGGTATCTTTGATGGTTTATACACACTTGTCTGCACTTGATACTTGGCTA