Contig 001335:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF018N24+                                       TTCAATCCATGCTCCCTTCCGTCTACACCAT
                      ____________________________________________________________
consensus                                          TTCAATCCATGCTCCCTTCCGTCTACACCAT
 
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rJMSF018N24+          CGGCCCCTTACAGCTCCTGGAGAAAACTCTGGTACAAGACGATGACGTCAAAGCATTCCG
                      ____________________________________________________________
consensus             CGGCCCCTTACAGCTCCTGGAGAAAACTCTGGTACAAGACGATGACGTCAAAGCATTCCG
 
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rJMSF018N24+          ATCAAATCTCTGGAAAGAAGACCAAACCTGTCTCGATTGGCTTAACACCAAAGACCCAAA
rJMSF017G06+                                  AACCTGTCTCGATTGGCTTAACACCAAAGACCCAAA
                      ____________________________________________________________
consensus             ATCAAATCTCTGGAAAGAAGACCAAACCTGTCTCGATTGGCTTAACACCAAAGACCCAAA
 
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rJMSF018N24+          CTCCGTCGTGTACGTAAACTTCGGAAGCATCACCGTGATGACCCCCGACCAGCTCGTGGA
rJMSF017G06+          CTCCGTCGTGTACGTAAACTTCGGAAGCATCACCGTGATGACCCCCGACCAGCTCGTGGA
                      ____________________________________________________________
consensus             CTCCGTCGTGTACGTAAACTTCGGAAGCATCACCGTGATGACCCCCGACCAGCTCGTGGA
 
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rJMSF018N24+          ATTCGCCTGGGGATTAGCGAACAGCAAGAAGACGTTCTTGTGGATCATAAGGCCTGATGC
rJMSF017G06+          ATTCGCCTGGGGATTAGCGAACAGCAAGAAGACGTTCTTGTGGATCATAAGGCCTGATGC
                      ____________________________________________________________
consensus             ATTCGCCTGGGGATTAGCGAACAGCAAGAAGACGTTCTTGTGGATCATAAGGCCTGATGC
 
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rJMSF018N24+          TGTCTCCGGGGAAGAAGCCGTTGTTCCACCGGAATTTCTCGAAGAAACGAAAGAGAGAGG
rJMSF017G06+          TGTCTCCGGGGAAGAAGCCGTTGTTCCACCGGAATTTCTCGAAGAAACGAAAGAGAGAGG
                      ____________________________________________________________
consensus             TGTCTCCGGGGAAGAAGCCGTTGTTCCACCGGAATTTCTCGAAGAAACGAAAGAGAGAGG
 
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rJMSF018N24+          CATGCTGGCGAGTTGGTGCCCGCAAGAGAAAGTCCTGGGCCATCCGGCGGTGGGAGGGTT
rJMSF017G06+          CATGCTGGCGAGTTGGTGCCCGCAAGAGAAAGTCCTGGGCCATCCGGCGGTGGGAGGGTT
                      ____________________________________________________________
consensus             CATGCTGGCGAGTTGGTGCCCGCAAGAGAAAGTCCTGGGCCATCCGGCGGTGGGAGGGTT
 
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rJMSF018N24+          TTTGACTCACAGCGGATGGAATTCGACTCTGGAGAGCATTTGTGCGGGTGTGCCTATGAT
rJMSF017G06+          TTTGACTCACAGCGGATGGAATTCGACTCTGGAGAGCATTTGTGCGGGTGTGCCTATGAT
                      ____________________________________________________________
consensus             TTTGACTCACAGCGGATGGAATTCGACTCTGGAGAGCATTTGTGCGGGTGTGCCTATGAT
 
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rJMSF018N24+          CTGTTGGCCGTTTTTCGCGGAGCAACAGACCAACTGCTGGTACTGTGGTACCCATTGGGG
rJMSF017G06+          CTGTTGGCCGTTTTTCGCGGAGCAACAGACCAACTGCTGGTACTGTGGTACCCATTGAGG
                      ____________________________________________________________
consensus             CTGTTGGCCGTTTTTCGCGGAGCAACAGACCAACTGCTGGTACTGTGGTACCCATTGGGG
 
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rJMSF018N24+          CATTGGAATGGAGATTAACAACAATGTGAAGAGAAACGAAGTGGAAAGTCTTGTTAAGGA
rJMSF017G06+          CATTGGAATGGAGATTAACAACAATGTGAAGAGAAACGAAGTGGAAAGTCTTGTTAAGGA
                      ____________________________________________________________
consensus             CATTGGAATGGAGATTAACAACAATGTGAAGAGAAACGAAGTGGAAAGTCTTGTTAAGGA
 
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rJMSF018N24+          GTTGATGGATGGTGAGAAGGGGAAAGAGATGAAGAGAAAGGCGATGGAGTGGAAGAAGTT
rJMSF017G06+          GTTGATGGATGGTGAGAAGGGGAAAGAGATGAAGAGAAAGGCGATGGAGTGGAAGAAGTT
                      ____________________________________________________________
consensus             GTTGATGGATGGTGAGAAGGGGAAAGAGATGAAGAGAAAGGCGATGGAGTGGAAGAAGTT
 
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rJMSF018N24+          AGCTCAAGATTCAGCTACAGCTGCATCAGGTTCATCTTATGTCAACTTAGAACAAATCTT
rJMSF017G06+          AGCTCAAGATTCAGCTACAGCTGCATCAGGTTCATCTTATGTCAACTTAGAACAAATCTT
                      ____________________________________________________________
consensus             AGCTCAAGATTCAGCTACAGCTGCATCAGGTTCATCTTATGTCAACTTAGAACAAATCTT
 
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rJMSF018N24+          CAATAAAGTACTTCTGTCTCCAAAATGTTAGTCAAAC                       
rJMSF017G06+          CAATAAAGTACTTCTGTCTCCAAAATGTTAGTCAAACTAACACTATGCCTTTTATATAAT
                      ____________________________________________________________
consensus             CAATAAAGTACTTCTGTCTCCAAAATGTTAGTCAAACTAACACTATGCCTTTTATATAAT
 
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rJMSF017G06+          AACTTTTTAATATATTGAAAAATTCATGTGGAGTTCACTTATAACTTTTGCAGCATTAAT
                      ____________________________________________________________
consensus             AACTTTTTAATATATTGAAAAATTCATGTGGAGTTCACTTATAACTTTTGCAGCATTAAT
 
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rJMSF017G06+          TACTCTTTCGAGTGTCATGTTCATGTGTACTGTATCATATAAGTTATAACAAAATTGGGA
                      ____________________________________________________________
consensus             TACTCTTTCGAGTGTCATGTTCATGTGTACTGTATCATATAAGTTATAACAAAATTGGGA