| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF015P03 | Sequence | 481 | 002327 (3) | ref|XP_011099557.1| | 1e-81 | PREDICTED: 4-coumarate--CoA ligase-like 5 [Sesamum indicum] | 742 | 001328 (3) | ref|XP_004253129.1| | 3e-128 | PREDICTED: 4-coumarate--CoA ligase-like 5 [Solanum lycopersicum] |
| JMSF032I06 | Sequence | 685 | 002327 (3) | gb|EYU17530.1| | 3e-121 | hypothetical protein MIMGU_mgv1a003887mg [Erythranthe guttata] | 718 | 001328 (3) | ref|XP_004253129.1| | 1e-112 | PREDICTED: 4-coumarate--CoA ligase-like 5 [Solanum lycopersicum] |
| JMSF037J02 | Sequence | 683 | 002327 (3) | gb|EYU17530.1| | 3e-121 | hypothetical protein MIMGU_mgv1a003887mg [Erythranthe guttata] | 696 | 001328 (3) | ref|XP_004253129.1| | 2e-117 | PREDICTED: 4-coumarate--CoA ligase-like 5 [Solanum lycopersicum] |
This contig is upended
. : . : . : . : . : . :
rJMSF032I06+ TCG
rJMSF015P03+ GAGTCGACCGGAATTGGGGCGTCG
____________________________________________________________
consensus GAGTCGACCGGAATTGGGGCGTCG
. : . : . : . : . : . :
rJMSF032I06+ ACTGACTCGTTGGAGGAGAGCCGGGAAGTACGGAACGGCGGGGGTTGTTGTCTCCGAGCA
rJMSF037J02+ GGGGTTGTTGTCTCCGAGCA
rJMSF015P03+ ACTGACTCGTTGGAGGAGAGCC-GGAAGTACGGAACGGC-GGGGTTGTTGTCTCCGAGCA
____________________________________________________________
consensus ACTGACTCGTTGGAGGAGAGCCGGGAAGTACGGAACGGCGGGGGTTGTTGTCTCCGAGCA
. : . : . : . : . : . :
rJMSF032I06+ TGGAGGCGAGAATTGTAGACCCCGATAGTGGGGAATTATTGCCGGTGAACCGCACCGGTG
rJMSF037J02+ TGGAGGCGAGAATTGTAGACCCCGATAGTGGGGAATTATTGCCGGTGAACCGCACCGGTG
rJMSF015P03+ TGGAGGCGAGAATTGTAGACCCCGATAGTGGGGAATTATTGCCGGTGAACCGCACCGGTG
____________________________________________________________
consensus TGGAGGCGAGAATTGTAGACCCCGATAGTGGGGAATTATTGCCGGTGAACCGCACCGGTG
. : . : . : . : . : . :
rJMSF032I06+ AGCTGTGGCTCAGGGGACCCTGTATTATGAAAGGTTACTTCAGTAATGAAGAAGCTACGG
rJMSF037J02+ AGCTGTGGCTCAGGGGACCCTGTATTATGAAAGGTTACTTCAGTAATGAAGAAGCTACGG
rJMSF015P03+ AGCTGTGGCTCAGGGGACCCTGTATTATGAAAGGTTACTTCAGTAATGAAGAAGCTACGG
____________________________________________________________
consensus AGCTGTGGCTCAGGGGACCCTGTATTATGAAAGGTTACTTCAGTAATGAAGAAGCTACGG
. : . : . : . : . : . :
rJMSF032I06+ CATCAACACTAGATTCAAACGGATGGTTAAGAACTGGGGATCTGTGTTACATTGATGATG
rJMSF037J02+ CATCAACACTAGATTCAAACGGATGGTTAAGAACTGGGGATCTGTGTTACATTGATGATG
rJMSF015P03+ CATCAACACTAGATTCAAACGGATGGTTAAGAACTGGGGATCTGTGTTACATTGATGATG
____________________________________________________________
consensus CATCAACACTAGATTCAAACGGATGGTTAAGAACTGGGGATCTGTGTTACATTGATGATG
. : . : . : . : . : . :
rJMSF032I06+ ATGGATTTATATTTGTGGTTGATAGATTAAAGGAGCTGATTAAGTACAAGGGCTACCAGG
rJMSF037J02+ ATGGATTTATATTTGTGGTTGATAGATTAAAGGAGCTGATTAAGTACAAGGGCTACCAGG
rJMSF015P03+ ATGGATTTATATTTGTGGTTGATAGATTAAAGGAGCTGATTAAGTACAAGGGCTACCAGG
____________________________________________________________
consensus ATGGATTTATATTTGTGGTTGATAGATTAAAGGAGCTGATTAAGTACAAGGGCTACCAGG
. : . : . : . : . : . :
rJMSF032I06+ TTCCTCCGGCAGAGTTGGAGGCTTTGTTGCTAACTCACCCTGAAGTTGCTGATGCTGCTG
rJMSF037J02+ TTCCTCCGGCAGAGTTGGAGGCTTTGTTGCTAACTCACCCTGAAGTTGCTGATGCTGCTG
rJMSF015P03+ TTCCTCCGGCAGAGTTGGAGGCTTTGTTGCTAACTCACCCTGAAGTTGCTGATGCTGCTG
____________________________________________________________
consensus TTCCTCCGGCAGAGTTGGAGGCTTTGTTGCTAACTCACCCTGAAGTTGCTGATGCTGCTG
. : . : . : . : . : . :
rJMSF032I06+ TTATACCGTTTCCCGACAAGGATGTTGGACAGTTTCCAATGGTATATGTGGTGCGGAAAA
rJMSF037J02+ TTATACCGTTTCCCGACAAGGATGTTGGACAGTTTCCAATGGTATATTTGGTGCGGAAAA
rJMSF015P03+ TTATACCGTTTCCCGACAAGGATGTTGGACAGTTTCCAATGGTATATGTGGTGCGGAAAA
____________________________________________________________
consensus TTATACCGTTTCCCGACAAGGATGTTGGACAGTTTCCAATGGTATATGTGGTGCGGAAAA
. : . : . : . : . : . :
rJMSF032I06+ CTGGAAGTAGTATCTCAGAAAATGCAGTCATGGATTTTGTTGGCAAGCAGGTGGCTCCAT
rJMSF037J02+ CTGGAAGTAGTATCTCAGAAAATGCAGTCATGGATTTTGTTGGCAAGCAGGTGGCTCCAT
rJMSF015P03+ CTGGAAGTAGTATCTCAGAAAATGCAGTCATGGATTTTGTTGGCAAGCAGGTGGCTCCAT
____________________________________________________________
consensus CTGGAAGTAGTATCTCAGAAAATGCAGTCATGGATTTTGTTGGCAAGCAGGTGGCTCCAT
. : . : . : . : . : . :
rJMSF032I06+ ACAAGAGGATAAGGCGAGTGGCATTTGTAGCTTCCATCCCCAAGAATCCTTCAGGCAAGA
rJMSF037J02+ ACAAGAGGATAAGGCGAGTGGCATTTGTAGCTTCCATCCCCAAGAATCCTTCAGGCAAGA
rJMSF015P03+ ACAAGAGGATAAGGCGAGTGGCATTTGTAGCTTCCATCCCCAAGAATCCTTCAGGCAAGA
____________________________________________________________
consensus ACAAGAGGATAAGGCGAGTGGCATTTGTAGCTTCCATCCCCAAGAATCCTTCAGGCAAGA
. : . : . : . : . : . :
rJMSF032I06+ TACTAAGGAAAGATTTAATAAAGCTCGCCACTTCTAAACTATGAGTCATTAAAGTTTTGC
rJMSF037J02+ TACTAAGGAAAGATTTAATAAAGCTCGCCACTTCTAAACTATGAGTCATTAAAGTTTTGC
rJMSF015P03+ TACTAAGGAAAGATTTAATAAAGCTCGCCACTTCTAAACTATGAGTCATTAAAGTTTTGC
____________________________________________________________
consensus TACTAAGGAAAGATTTAATAAAGCTCGCCACTTCTAAACTATGAGTCATTAAAGTTTTGC
. : . : . : . : . : . :
rJMSF032I06+ CATATGCGTGGATTGGACATTTTTCTGTTATGTAATAATTTTGATATGTAAGCAATAAAT
rJMSF037J02+ CATATGCGTGGATTGGACATTTTTCTGTTATGTAATAATTTTGATATGTAAGCAATAAAT
rJMSF015P03+ CATATGCGTGGATTGGACATTTTTCTGTTATGTAATAATTTTGATATGTAAGCAATAAAT
____________________________________________________________
consensus CATATGCGTGGATTGGACATTTTTCTGTTATGTAATAATTTTGATATGTAAGCAATAAAT
. : . : . : . : . : . :
rJMSF032I06+ NACAGTTTTAAGATTTCATCCTTTCTGTTGTTGTAAAGGCTACTAGTGATCTTT
rJMSF037J02+ TACAGTTTTAAGATTTCATCCTTTCTGTTGTTGTAAAGGCTACTAGTGATCTTT
rJMSF015P03+ TACAGTTTTAAGATTTCATCCTTTCTGTTGTTGTAAAGGCTACTAGTGATCTTTAAATAT
____________________________________________________________
consensus TACAGTTTTAAGATTTCATCCTTTCTGTTGTTGTAAAGGCTACTAGTGATCTTTAAATAT