Contig 001319:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF014F14Sequence512006390 (3)ref|XP_009764762.1|4e-26PREDICTED: protein VAC14 homolog [Nicotiana sylvestris]813001319 (2)ref|XP_009797957.1|1e-39PREDICTED: protein VAC14 homolog isoform X1 [Nicotiana sylvestris]
JMSF017M08Sequence484006390 (3)ref|XP_006355062.1|2e-16PREDICTED: protein VAC14 homolog [Solanum tuberosum]768001319 (2)ref|XP_009797957.1|4e-38PREDICTED: protein VAC14 homolog isoform X1 [Nicotiana sylvestris]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF014F14+ GCTGCAGCTTCTTGNACCTGGAAGATACATCTG
                      ____________________________________________________________
consensus GCTGCAGCTTCTTGNACCTGGAAGATACATCTG
 
. : . : . : . : . : . :
rJMSF017M08+ TGTATGGTTTGCTGATGCTGCTACCCCAGCAAAGTGCAGCCTTCAA
rJMSF014F14+ GTTGTTAAAAGCCNTGTATGGTTTGCTGATGCTGCTACCCCAGCAAAGTGCAGCCTTCAA
                      ____________________________________________________________
consensus GTTGTTAAAAGCCNTGTATGGTTTGCTGATGCTGCTACCCCAGCAAAGTGCAGCCTTCAA
 
. : . : . : . : . : . :
rJMSF017M08+ AATTCTTCGGACCCGGTTGAAAACTGTGCCTGCATACTCTTTTAGTGGGGATCAACTTAG
rJMSF014F14+ AATTCTTCGGACCCGGTTGAAAACTGTGCCTGCATACTCTTTTAGTGGGGATCAACTTAG
                      ____________________________________________________________
consensus AATTCTTCGGACCCGGTTGAAAACTGTGCCTGCATACTCTTTTAGTGGGGATCAACTTAG
 
. : . : . : . : . : . :
rJMSF017M08+ CCAAGCATCATCGGGGAATCCTTATTTTCAGACTAGTCATTCAAGGGGCGACTCACGCAC
rJMSF014F14+ CCAAGCATCATCGGGGAATCCTTATTTTCAGACTAGTCATTCAAGGGGCGACTCACGCAC
                      ____________________________________________________________
consensus CCAAGCATCATCGGGGAATCCTTATTTTCAGACTAGTCATTCAAGGGGCGACTCACGCAC
 
. : . : . : . : . : . :
rJMSF017M08+ TTCAATTGATGGTAATTTTAGTGAAGATTCAAACGATATGCACAACGGAATAAATTTCTC
rJMSF014F14+ TTCAATTGATGGTAATTTTAGTGAAGATTCAAACGATATGCACAACGGAATAAATTTCTC
                      ____________________________________________________________
consensus TTCAATTGATGGTAATTTTAGTGAAGATTCAAACGATATGCACAACGGAATAAATTTCTC
 
. : . : . : . : . : . :
rJMSF017M08+ CACAAGGCTGCAGCTGTTTGAACACATCCAACATATGCACCGTATGCATTCGAAGTCACA
rJMSF014F14+ CACAAGGCTGCAGCTGTTTGAACACATCCAACATATGCACCGTATGCATTCGAAGTCACA
                      ____________________________________________________________
consensus CACAAGGCTGCAGCTGTTTGAACACATCCAACATATGCACCGTATGCATTCGAAGTCACA
 
. : . : . : . : . : . :
rJMSF017M08+ GGAGTCGTTCTCACGTTGCAGTCCTAATTCATCGTCAAAGAACGCCAATTCTGTTCAGGA
rJMSF014F14+ GGAGTCGTTCTCACGTTGCAGTCCTAATTCATCGTCAAAGAACGCCAATTCTGTTCAGGA
                      ____________________________________________________________
consensus GGAGTCGTTCTCACGTTGCAGTCCTAATTCATCGTCAAAGAACGCCAATTCTGTTCAGGA
 
. : . : . : . : . : . :
rJMSF017M08+ GTTGCAAGGGACTGAAGACTCCAAACGACCTGACCCAAAGCCAGACTTGAATGGGCCGTC
rJMSF014F14+ GTTGCAAGGGACTGAAGACTCCAAACGACCTGACCCAAAGCCAGACTTGAATGGGCCGTC
                      ____________________________________________________________
consensus GTTGCAAGGGACTGAAGACTCCAAACGACCTGACCCAAAGCCAGACTTGAATGGGCCGTC
 
. : . : . : . : . : . :
rJMSF017M08+ ATCAAGATCGTCACGCAAAGGCCCTGGACAGTTGCTGATTTGATTGCTTTGCTTTTGCTT
rJMSF014F14+ ATCAAGATCGTCACGCAAAGGCCCTGGACAGTTGCTGATTTGATTGCTTTGCTTTTGCTT
                      ____________________________________________________________
consensus ATCAAGATCGTCACGCAAAGGCCCTGGACAGTTGCTGATTTGATTGCTTTGCTTTTGCTT
 
. : . : . : . : . : . :
rJMSF017M08+ GCTTGCACTCCTGATGGGAGGAGGGAGGAGGTCCAATTATACAAAAATTTTGGGGTATTC
rJMSF014F14+ GCTTGCACTCCTGATGGGAGGAGGGAGGAGGTCCAATTATACAAAAATTTTGGGGTATTC
                      ____________________________________________________________
consensus GCTTGCACTCCTGATGGGAGGAGGGAGGAGGTCCAATTATACAAAAATTTTGGGGTATTC
 
. : . : . : . : . : . :
rJMSF017M08+ CAATTGAGTTTTGGTATAATTTGTAAATTGTATATCCTGACATTTGTCTTTTTGAACTTA
rJMSF014F14+ CAATTGAGTTTTGGTATAATTTGTAAATTGTATATCCTGACATTTGTCTTTTTGAACTTA
                      ____________________________________________________________
consensus CAATTGAGTTTTGGTATAATTTGTAAATTGTATATCCTGACATTTGTCTTTTTGAACTTA
 
. : . : . : . : . : . :
rJMSF017M08+ TGGAAGGTTGAAATGGTGGGGAAATCATCAGGTATTGGTTATATAGAATTGTTCCCAAGC
rJMSF014F14+ TGGAAGGTTGAAATGGTGGGGAAATCATCAGGTATTGGTTATATAGAATTGTTCCCAAGC
                      ____________________________________________________________
consensus TGGAAGGTTGAAATGGTGGGGAAATCATCAGGTATTGGTTATATAGAATTGTTCCCAAGC
 
. : . : . : . : . : . :
rJMSF017M08+ TATTTTTTTTTAAAATTTATTATTTTTCCCTAGTGAACAAGTAAGCTCATGTGGTTATGT
rJMSF014F14+ TATTTTTTTTTAAAATTTATTATTTTTCCCTAGTGAACAAGTAAGCTCATGTGGTTATGT
                      ____________________________________________________________
consensus TATTTTTTTTTAAAATTTATTATTTTTCCCTAGTGAACAAGTAAGCTCATGTGGTTATGT
 
. : . : . : . : . : . :
rJMSF017M08+ TATTTTTATTGAAAACCATATGGGCAGTAGGTAGTTGTGTAGGACATTACATCCAAGTTT
rJMSF014F14+ TATTTTTATTGAAAACCATATGGGCAGTAGGTAGTTGTGTAGGACATTACATCCAAGTTT
                      ____________________________________________________________
consensus TATTTTTATTGAAAACCATATGGGCAGTAGGTAGTTGTGTAGGACATTACATCCAAGTTT