| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF011B21 | Sequence | 324 | 013566 (3) | ref|XP_009624396.1| | 1e-29 | PREDICTED: uncharacterized protein LOC104115460 isoform X1 [Nicotiana tomentosi | 763 | 001302 (3) | ref|XP_009624399.1| | 2e-62 | PREDICTED: uncharacterized protein LOC104115460 isoform X3 [Nicotiana tomentosi |
| JMSF012A03 | Sequence | 277 | 013566 (3) | ref|XP_009624399.1| | 3e-18 | PREDICTED: uncharacterized protein LOC104115460 isoform X3 [Nicotiana tomentosi | 755 | 001302 (3) | ref|XP_009624399.1| | 3e-60 | PREDICTED: uncharacterized protein LOC104115460 isoform X3 [Nicotiana tomentosi |
| JMSF050B22 | Sequence | 686 | 013566 (3) | ref|XP_009624396.1| | 9e-74 | PREDICTED: uncharacterized protein LOC104115460 isoform X1 [Nicotiana tomentosi | 700 | 001302 (3) | ref|XP_009624399.1| | 4e-48 | PREDICTED: uncharacterized protein LOC104115460 isoform X3 [Nicotiana tomentosi |
This contig is upended
. : . : . : . : . : . :
rJMSF012A03+ AGACTNGGATGTCTTGAAGAATACACAGGGATATCAATT
rJMSF011B21+ CGACAAAGACTTGGATGTCTTGAAGAATACACAGGGATATCAATT
____________________________________________________________
consensus CGACAAAGACTTGGATGTCTTGAAGAATACACAGGGATATCAATT
. : . : . : . : . : . :
rJMSF012A03+ GTTCACTCAGGATGGATTGAGGGATCGAGGCGTGTTTGACTCGCTTTGCCAGGACGGTAT
rJMSF050B22+ GAGGGATCGAGGCGTGTTTGACTCGCTTTGCCAGGACGGTAT
rJMSF011B21+ GTTCACTCAGGATGGATTGAGGGATCGAGGCGTGTTTGACTCGCTTTGCCAGGACGGTAT
____________________________________________________________
consensus GTTCACTCAGGATGGATTGAGGGATCGAGGCGTGTTTGACTCGCTTTGCCAGGACGGTAT
. : . : . : . : . : . :
rJMSF012A03+ AGTGGCGTTTAGCAAGTGGGATTTCGATCCCCTAGAGCTGAGTAACCCACAGCCTCAGAG
rJMSF050B22+ AGTGGCGTTTAGCAAGTGGGATTTCGATCCCCTAGAGCTGAGTAACCCACAGCCTCAGAG
rJMSF011B21+ AGTGGCGTTTAGCAAGTGGGATTTCGATCCCCTAGAGCTGAGTAACCCACAGCCTCAGAG
____________________________________________________________
consensus AGTGGCGTTTAGCAAGTGGGATTTCGATCCCCTAGAGCTGAGTAACCCACAGCCTCAGAG
. : . : . : . : . : . :
rJMSF012A03+ CGAGTGCTCGGTTCATCTCTGGCAAGGTTACAAGGACAAGGTTGTGCCAGTAGAATTACA
rJMSF050B22+ CGAGTGCTCGGTTCATCTCTGGCAAGGTTACAAGGACAAGGTTGTGCCAGTAGAATTACA
rJMSF011B21+ CGAGTGCTCGGTTCATCTCTGGCAAGGTTACAAGGACAAGGTTGTGCCAGTAGAATTACA
____________________________________________________________
consensus CGAGTGCTCGGTTCATCTCTGGCAAGGTTACAAGGACAAGGTTGTGCCAGTAGAATTACA
. : . : . : . : . : . :
rJMSF012A03+ AAGATATGTGTGGAAAAGGCTGCCATGGATTCGGTATCATGAAGTTCCACAGGGAGGGCA
rJMSF050B22+ AAGATATGTGTGGAAAAGGCTGCCATGGATTCGGTATCATGAAGTTCCACAGGGAGGGCA
rJMSF011B21+ AAGATATGTGTGGAAAAGGCTGCCATGGATTCGGTATCATGAAGTTCCACAGGGAGGGCA
____________________________________________________________
consensus AAGATATGTGTGGAAAAGGCTGCCATGGATTCGGTATCATGAAGTTCCACAGGGAGGGCA
. : . : . : . : . : . :
rJMSF012A03+ TTTGCTGGTGTATGATAATGCAGTATGTGAAGCAATCTTGAGATCTCTTTTGCTTGGTGA
rJMSF050B22+ TTTGCTGGTGTATGATAATGCAGTATGTGAAGCAATCTTGAGATCTCTTTTGCTTGGTGA
rJMSF011B21+ TTTGCTGGTGTATGATAATGCAGTATGTGAAGCAATCTTGAGATCTCTTTTGCTTGGTGA
____________________________________________________________
consensus TTTGCTGGTGTATGATAATGCAGTATGTGAAGCAATCTTGAGATCTCTTTTGCTTGGTGA
. : . : . : . : . : . :
rJMSF012A03+ AGATTCTCCATTGTACATGCCAAACTTGGGCAATTAACTCATATTTATTCATTCTTCTTG
rJMSF050B22+ AGATTCTCCATTGTACATGCCAAACTTGGGCAATTAACTCATATTTATTCATTCTTCTTG
rJMSF011B21+ AGATTCTCCATTGTACATGCCAAACTTGGGCAATTAACTCATATTTATTCATTCTTCTTG
____________________________________________________________
consensus AGATTCTCCATTGTACATGCCAAACTTGGGCAATTAACTCATATTTATTCATTCTTCTTG
. : . : . : . : . : . :
rJMSF012A03+ TGTTTAATTTCAAAATTGATTTCTGGGACTTGAACTGATACAAGTGTAGCAGGCAGTGAT
rJMSF050B22+ TGTTTAATTTCAAAATTGATTTCTGGGACTTGAACTGATACAAGTGTAGCAGGCAGTGAT
rJMSF011B21+ TGTTTAATTTCAAAATTGATTTCTGGGACTTGAACTGATACAAGTGTAGCAGGCAGTGAT
____________________________________________________________
consensus TGTTTAATTTCAAAATTGATTTCTGGGACTTGAACTGATACAAGTGTAGCAGGCAGTGAT
. : . : . : . : . : . :
rJMSF012A03+ TCCAACTGTTTCAAGAGCTCAGAATGGAAAGAGAAGAGCTTT--AACATTGGTAACTCAT
rJMSF050B22+ TCCAACTGTTTCAAGAGCTCAGAATGGAAAGAGAAGAGCTTTTGAACATTGGTAACTCAT
rJMSF011B21+ TCCAACTGTTTCAAGAGCTCAGAATGGAAAGAGAAGAGCTTT--AACATTGGTAACTCAT
____________________________________________________________
consensus TCCAACTGTTTCAAGAGCTCAGAATGGAAAGAGAAGAGCTTT--AACATTGGTAACTCAT
. : . : . : . : . : . :
rJMSF012A03+ CCAATTCTGGCATTTGATCCAAAAATTGATTCCAAATGATCTTAGATATTGATATGGGTT
rJMSF050B22+ CCAATTCTGGCATTTGATCCAAAAATTGATTCCAAATGATCTTAGATATTGATATGGGTT
rJMSF011B21+ CCAATTCTGGCATTTGATCCAAAAATTGATTCCAAATGATCTTAGATATTGATATGGGTT
____________________________________________________________
consensus CCAATTCTGGCATTTGATCCAAAAATTGATTCCAAATGATCTTAGATATTGATATGGGTT
. : . : . : . : . : . :
rJMSF012A03+ TCAAAATTTCAAACTCCAAACCTATGCTCTAGAAGTAAACAATTTGTATGTCAACTTGAT
rJMSF050B22+ TCAAAATTTCAAACTCCAAACCTATGCTCTAGAAGTAAACAATTTGTATGTCAACTTGAT
rJMSF011B21+ TCAAAATTTCAAACTCCAAACCTATGCTCTAGAAGTAAACAATTTGTATGTCAACTTGAT
____________________________________________________________
consensus TCAAAATTTCAAACTCCAAACCTATGCTCTAGAAGTAAACAATTTGTATGTCAACTTGAT
. : . : . : . : . : . :
rJMSF012A03+ CACATTATTAAGCATATATGTGGTTGAGACTATTTGTATTTATTTATCTAGTCTAAATAT
rJMSF050B22+ CACATTATTAAGCATATATGTGGTTGAGACTATTTGTATTTATTTATCTAGTCTAAATAT
rJMSF011B21+ CACATTATTAAGCATATATGTGGTTGAGACTATTTGTATTTATTTATCTAGTCTAAATAT
____________________________________________________________
consensus CACATTATTAAGCATATATGTGGTTGAGACTATTTGTATTTATTTATCTAGTCTAAATAT
. : . : . : . : . : . :
rJMSF012A03+ GTTCATGTAGACTCGCCATAGTTGTAACTTACTGCTACTTCTCCTCCCCTGTACACTA
rJMSF050B22+ GTTCATGTAGACTCGCCATAGTTGTAACTTACTGCTACTTCTCCTCCCCTGTACACTA
rJMSF011B21+ GTTCATGTAGACTCGCCATAGTTGTAACTTACTGCTACTTCTCCTCCCCTGTACACTATT
____________________________________________________________
consensus GTTCATGTAGACTCGCCATAGTTGTAACTTACTGCTACTTCTCCTCCCCTGTACACTATT