Contig 001301:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF017M20+                                                        ATGCTGGACTGGTT
                      ____________________________________________________________
consensus                                                           ATGCTGGACTGGTT
 
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rJMSF017M20+          GAAGAAGGGNCAAAAAATGTTTTCATCCATNGTGAATGAATATGGACTGGTGCCAAAACA
rJMSF011A18+                                         GTGAATGAATATGGACTGGTGCCAAAACA
                      ____________________________________________________________
consensus             GAAGAAGGGNCAAAAAATGTTTTCATCCATNGTGAATGAATATGGACTGGTGCCAAAACA
 
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rJMSF017M20+          TGAACACTACGGTTGCATGGTAGACCTCTATGGCCGTGCAAACCTTCTTAAAGAAGCCCT
rJMSF011A18+          TGAACACTACGGTTGCATGGTAGACCTCTATGGCCGTGCAAACCTTCTTAAAGAAGCCCT
                      ____________________________________________________________
consensus             TGAACACTACGGTTGCATGGTAGACCTCTATGGCCGTGCAAACCTTCTTAAAGAAGCCCT
 
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rJMSF017M20+          TAAGGTTATAGAGACTATGCCAATGGCCCCAAATGTAGTCATCTGGGGCTCCTTAATGGC
rJMSF011A18+          TAAGGTTATAGAGACTATGCCAATGGCCCCAAATGTAGTCATCTGGGGCTCCTTAATGGC
                      ____________________________________________________________
consensus             TAAGGTTATAGAGACTATGCCAATGGCCCCAAATGTAGTCATCTGGGGCTCCTTAATGGC
 
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rJMSF017M20+          AGCCTGTCGGATCCATGGTGAGTTTGAGTTAGGAGAATTTGCTGCAAAACAGATTCTTGT
rJMSF011A18+          AGCCTGTCGGATCCATGGTGAGTTTGAGTTAGGAGAATTTGCTGCAAAACAGATTCTTGT
                      ____________________________________________________________
consensus             AGCCTGTCGGATCCATGGTGAGTTTGAGTTAGGAGAATTTGCTGCAAAACAGATTCTTGT
 
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rJMSF017M20+          GTTAGAACCAGACCACAGTGGTGCCCATGTTTTATTATCGAACATTTATGCCAAAGAAAG
rJMSF011A18+          GTTAGAACCAGACCACAGTGGTGCCCATGTTTTATTATCGAACATTTATGCCAAAGAAAG
                      ____________________________________________________________
consensus             GTTAGAACCAGACCACAGTGGTGCCCATGTTTTATTATCGAACATTTATGCCAAAGAAAG
 
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rJMSF017M20+          GAGATGGGGAAATGTTAGAGAGGTGAGAAAATTGATGACACTCAATGACATATCGAAGGA
rJMSF011A18+          GAGATGGGGAAATGTTAGAGAGGTGAGAAAATTGATGACACTCAATGACATATCGAAGGA
                      ____________________________________________________________
consensus             GAGATGGGGAAATGTTAGAGAGGTGAGAAAATTGATGACACTCAATGACATATCGAAGGA
 
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rJMSF017M20+          ACAGGGCTGCAGCAAGATCGAAATCAACCAGGAGATCCATGAATTTTTGACGGCAGACAG
rJMSF011A18+          ACAGGGCTGCAGCAAGATCGAAATCAACCAGGAGATCCATGAATTTTTGACGGCAGACAG
                      ____________________________________________________________
consensus             ACAGGGCTGCAGCAAGATCGAAATCAACCAGGAGATCCATGAATTTTTGACGGCAGACAG
 
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rJMSF017M20+          AAGTCATAAACGAGCAGATGAGATATACGCAAAGCTGGATATAGTGGTTGATAAACTGAA
rJMSF011A18+          AAGTCATAAACGAGCAGATGAGATATACGCAAAGCTGGATATAGTGGTTGATAAACTGAA
                      ____________________________________________________________
consensus             AAGTCATAAACGAGCAGATGAGATATACGCAAAGCTGGATATAGTGGTTGATAAACTGAA
 
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rJMSF017M20+          AGAGGCAGGATATGCCCCAGATACCAGTAGTGTTTTACTCGACTTAGACGAAGATGAGAA
rJMSF011A18+          AGAGGCAGGATATGCCCCAGATACCAGTAGTGTTTTACTCGACTTAGACGAAGATGAGAA
                      ____________________________________________________________
consensus             AGAGGCAGGATATGCCCCAGATACCAGTAGTGTTTTACTCGACTTAGACGAAGATGAGAA
 
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rJMSF017M20+          GAAGGATGCAATTCTTTGGCACAGCGAGAAACTAGCGTTTTGTTATGGACTAATGAACAG
rJMSF011A18+          GAAGGATGCAATTCTTTGGCACAGCGAGAAACTAGCGTTTTGTTATGGACTAATGAACAG
                      ____________________________________________________________
consensus             GAAGGATGCAATTCTTTGGCACAGCGAGAAACTAGCGTTTTGTTATGGACTAATGAACAG
 
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rJMSF017M20+          CGAAAGAGGCTCTAGCATACGCATCATCAAGAACCTAAGGGTCTGCGAGGACTGTCATAA
rJMSF011A18+          CGAAAGAGGCTCTAGCATACGCATCATCAAGAACCTAAGGGTCTGCGAGGACTGTCATAA
                      ____________________________________________________________
consensus             CGAAAGAGGCTCTAGCATACGCATCATCAAGAACCTAAGGGTCTGCGAGGACTGTCATAA
 
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rJMSF017M20+          CTTTATGAAGTTGGCATCGAGGGTGTTTGATAGGAAAATTGTTATGAGAGATAGGACTAG
rJMSF011A18+          CTTTATGAAGTTGGCATCGAGGGTGTTTGATAGGAAAATTGTTATGAGAGATAGGACTAG
                      ____________________________________________________________
consensus             CTTTATGAAGTTGGCATCGAGGGTGTTTGATAGGAAAATTGTTATGAGAGATAGGACTAG
 
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rJMSF017M20+          ATTTCATCAATATGCAGATGGCCTCTGCTCATGTAAAGACTTCTGGTAAGTCTCGAGATT
rJMSF011A18+          ATTTCATCAATATGCAGATGGCCTCTGCTCATGTAAAGACTTCTGGTAAGTCTCGAGATT
                      ____________________________________________________________
consensus             ATTTCATCAATATGCAGATGGCCTCTGCTCATGTAAAGACTTCTGGTAAGTCTCGAGATT