Contig 001297:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF001I20Sequence337007728 (6)ref|XP_009619067.1|3e-26PREDICTED: nucleolar protein 6 isoform X3 [Nicotiana tomentosiformis]762001297 (5)ref|XP_004232410.1|2e-90PREDICTED: nucleolar protein 6 [Solanum lycopersicum]
JMSF002C19Sequence372007728 (6)ref|XP_009619067.1|8e-41PREDICTED: nucleolar protein 6 isoform X3 [Nicotiana tomentosiformis]748001297 (5)ref|XP_004232410.1|6e-87PREDICTED: nucleolar protein 6 [Solanum lycopersicum]
JMSF010B09Sequence209007728 (6)emb|CDP16827.1|2e-14unnamed protein product [Coffea canephora]539001297 (5)ref|XP_011099619.1|2e-35PREDICTED: nucleolar protein 6 isoform X3 [Sesamum indicum]
JMSF019L02Sequence493007728 (6)ref|XP_009619067.1|2e-66PREDICTED: nucleolar protein 6 isoform X3 [Nicotiana tomentosiformis]787001297 (5)ref|XP_009777139.1|1e-97PREDICTED: nucleolar protein 6 isoform X1 [Nicotiana sylvestris] ref|XP_00977714
JMSF024G01Sequence684007728 (6)ref|XP_009619067.1|2e-99PREDICTED: nucleolar protein 6 isoform X3 [Nicotiana tomentosiformis]670001297 (5)ref|XP_009777139.1|7e-75PREDICTED: nucleolar protein 6 isoform X1 [Nicotiana sylvestris] ref|XP_00977714

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF001I20+ AGANGGAAGTGATTTTACAACCAAGGATATGAAGGAAATCAATGTGGCTTTAAAAAAAG
rJMSF019L02+ GGATATGAAGGAAATCAATGTGGCTTTTAAAAAAG
                      ____________________________________________________________
consensus AGANGGAAGTGATTTTACAACCAAGGATATGAAGGAAATCAATGTGGCTTTTAAAAAAG
 
. : . : . : . : . : . :
rJMSF001I20+ CAGAGANGAATCAGAAACAAAGATGCATGATGTAAGTCCAGCAATG-TTTTGGCTACTAA
rJMSF019L02+ CAGAGAAGAATCAGAAACAAAGATGCATGATGTAAGTCCAGCAATGTTTTTGGCTACTAA
                      ____________________________________________________________
consensus CAGAGAAGAATCAGAAACAAAGATGCATGATGTAAGTCCAGCAATGTTTTTGGCTACTAA
 
. : . : . : . : . : . :
rJMSF001I20+ ATATGACCTNGCCTCTGAAGCTTGGACCAGATCAACACCAGCAATGACAGAGCTTAAGAG
rJMSF019L02+ ATATGACCTTGCCTCTGAAGCTTGGACCAGATCAACACCAGCAATGACAGAGCTTAAGAG
rJMSF024G01+ CCAGCAATGACAGAGCTTAAGAG
rJMSF002C19+ ATGACCTTGCCTCTGAAGCTTGGACCAGATCAACACCAGCAATGACAGAGCTTAAGAG
                      ____________________________________________________________
consensus ATATGACCTTGCCTCTGAAGCTTGGACCAGATCAACACCAGCAATGACAGAGCTTAAGAG
 
. : . : . : . : . : . :
rJMSF001I20+ ATTAGTAGCATATGC-AACTAGCAGTGCAAATTTGCTGACCAAACTGATTTCCCAAGATG
rJMSF019L02+ ATTAGTAGCATATGC-AACTAGCAGTGCAAATTTGCTGACCAAACTGATTTCCCAAGATG
rJMSF024G01+ ATTAGTAGCATATGCAAACTAGCAGTGCAAATTTGCTGACCAAACTGATTTCCCAAGATG
rJMSF002C19+ ATTAGTAGCATATGC-AACTAGCAGTGCAAATTTGCTGACCAAACTGATTTCCCAAGATG
                      ____________________________________________________________
consensus ATTAGTAGCATATGC-AACTAGCAGTGCAAATTTGCTGACCAAACTGATTTCCCAAGATG
 
. : . : . : . : . : . :
rJMSF001I20+ AATGTGATTCTGACGGCTGGAAGTGCCTTTTCCGCACACCTTTAAACAATTATGATGCCG
rJMSF019L02+ AATGTGATTCTGACGGCTGGAAGTGCCTTTTCCGCACACCTTTAAACAATTATGATGCCG
rJMSF024G01+ AATGTGATTCTGACGGCTGGAAGTGCCTTTTCCGCACACCTTTAAACAATTATGATGCCG
rJMSF002C19+ AATGTGATTCTGACGGCTGGAAGTGCCTTTTCCGCACACCTTTAAACAATTATGATGCCG
                      ____________________________________________________________
consensus AATGTGATTCTGACGGCTGGAAGTGCCTTTTCCGCACACCTTTAAACAATTATGATGCCG
 
. : . : . : . : . : . :
rJMSF001I20+ TTGTTCTCCTTCACAGAGACAAATTACCCTATCCACACCATCTTCTTTTCCCATCTGAAC
rJMSF019L02+ TTGTTCTCCTTCACAGAGACAAATTACCCTATCCACACCATCTTCTTTTCCCATCTGAAC
rJMSF024G01+ TTGTTCTCCTTCACAGAGACAAATTACCCTATCCACACCATCTTCTTTTCCCATCTGAAC
rJMSF002C19+ TTGTTCTCCTTCACAGAGACAAATTACCCTATCCACACCATCTTCTTTTCCCATCTGAAC
                      ____________________________________________________________
consensus TTGTTCTCCTTCACAGAGACAAATTACCCTATCCACACCATCTTCTTTTCCCATCTGAAC
 
. : . : . : . : . : . :
rJMSF001I20+ TCAAACAAGGACGGTGTGTGTTGCATGGCAAACCAACCAAGATTTTCCATCCTTTCATTG
rJMSF019L02+ TCAAACAAGGACGGTGTGTGTTGCATGGCAAACCAACCAAGATTTTCCATCCTTTCATTG
rJMSF024G01+ TCAAACAAGGACGGTGTGTGTTGCATGGCAAACCAACCAAGATTTTCCATCCTTTCATTG
rJMSF002C19+ TCAAACAAGGACGGTGTGTGTTGCATGGCAAACCAACCAAGATTTTCCATCCTTTCATTG
rJMSF010B09+ CAAACAAGGACGGTGTGTGTTGCANGGCAAACCAACCAAGATTTTCCATCCTCTCATTG
                      ____________________________________________________________
consensus TCAAACAAGGACGGTGTGTGTTGCATGGCAAACCAACCAAGATTTTCCATCCTTTCATTG
 
. : . : . : . : . : . :
rJMSF001I20+ TTCCCGCAGACCTCAGAGGGAGGAGGTCTGAGGAATTGAAATCTAAGCTGATGGTGAACT
rJMSF019L02+ TTCCCGCAGACCTCAGAGGGAGGAGGTCTGAGGAATTGAAATCTAAGCTGATGGTGAACT
rJMSF024G01+ TTCCCGCAGACCTCAGAGGGAGGAGGTCTGAGGAATTGAAATCTAAGCTGATGGTGAACT
rJMSF002C19+ TTCCCGCAGACCTCAGAGGGAGGAGGTCTGAGGAATTGAAATCTAAGCTGATGGTGAACT
rJMSF010B09+ TTCCCGCAGACCTCAGNGGGAGGAGGTNTGAGGANTTGAAATCTAAGCTGNTGGTGAACT
                      ____________________________________________________________
consensus TTCCCGCAGACCTCAGAGGGAGGAGGTCTGAGGAATTGAAATCTAAGCTGATGGTGAACT
 
. : . : . : . : . : . :
rJMSF001I20+ TTGATCCACTGAGGTGCTTTATTAGTGAAATTGAGAGAGAATTTCCAGACACGTTCAAGA
rJMSF019L02+ TTGATCCACTGAGGTGCTTTATTAGTGAAATTGAGAGAGAATTTCCAGACACGTTCAAGA
rJMSF024G01+ TTGATCCACTGAGGTGCTTTATTAGTGAAATTGAGAGAGAATTTCCAGACACGTTCAAGA
rJMSF002C19+ TTGATCCACTGAGGTGCTTTATTAGTGAAATTGAGAGAGAATTTCCAGACACGTTCAAGA
rJMSF010B09+ TTGATCCACTGAGGTGCTTTATTAGTGAAATTGAGAGAGNATTTCCAGACACGTTCAAGA
                      ____________________________________________________________
consensus TTGATCCACTGAGGTGCTTTATTAGTGAAATTGAGAGAGAATTTCCAGACACGTTCAAGA
 
. : . : . : . : . : . :
rJMSF001I20+ TATGGTATGACTCGTTGGGTGGTGATGCCATCGGTCTCACTTGGGGAAAAGCTAGTTCAA
rJMSF019L02+ TATGGTATGACTCGTTGGGTGGTGATGCCATCGGTCTCACTTGGGGAAAAGCTAGTTCAA
rJMSF024G01+ TATGGTATGACTCGTTGGGTGGTGATGCCATCGGTCTCACTTGGGGAAAAGCTAGTTCAA
rJMSF002C19+ TATGGTATGACTCGTTGGGTGGTGATGCCATCGGTCTCACTTGGGGAAAAGCTAGTTCAA
rJMSF010B09+ TATGGTATGNCTCGTTNGGNGNTGATGCCATCGGTCTCACTNGGGGAAAAGCTAGTTCAA
                      ____________________________________________________________
consensus TATGGTATGACTCGTTGGGTGGTGATGCCATCGGTCTCACTTGGGGAAAAGCTAGTTCAA
 
. : . : . : . : . : . :
rJMSF001I20+ AGAAACGAGAAAGGGATTCCATGGCCGAGGGCGAAGATCCACTTGATATACTGAAATCTG
rJMSF019L02+ AGAAACGAGAAAGGGATTCCATGGCCGAGGGCGAAGATCCACTTGATATACTGAAATCTG
rJMSF024G01+ AGAAACGAGAAAGGGATTCCATGGCCGAGGGCGAAGATCCACTTGATATACTGAAATCTG
rJMSF002C19+ AGAAACGAGAAAGGGATTCCATGGCCGAGGGCGAAGATCCACTTGATATACTGAAATCTG
rJMSF010B09+ AGAACCGAGAAAGGGATTCCATGGCCGAGGGCGAAGATCCACTTGATATACTGAAATCTG
                      ____________________________________________________________
consensus AGAAACGAGAAAGGGATTCCATGGCCGAGGGCGAAGATCCACTTGATATACTGAAATCTG
 
. : . : . : . : . : . :
rJMSF001I20+ TTGGTGAAGTCGGGAAAGGCTTCGTGAGAAGTATTCATTTCCTTAAAGCCCGAAAATTAA
rJMSF019L02+ TTGGTGAAGTCGGGAAAGGCTTCGTGAGAAGTATTCATTTCCTTAAAGCCCGAAAATTAA
rJMSF024G01+ TTGGTGAAGTCGGGAAAGGCTTCGTGAGAAGTATTCATTTCCTTAAAGCCCGAAAATTAA
rJMSF002C19+ TTGGTGAAGTCGGGAAAGGCTTCGTGAGAAGTATTCATTTCCTTAAAGCCCGAAAATTAA
rJMSF010B09+ TNGGTGAAGTCGGGAANGGCTTCGTGAGAAGTATTCATTTCCTTAAAGCCCGAAAATNAA
                      ____________________________________________________________
consensus TTGGTGAAGTCGGGAAAGGCTTCGTGAGAAGTATTCATTTCCTTAAAGCCCGAAAATTAA
 
. : . : . : . : . : . :
rJMSF001I20+ GCCAATGAAACAGTTTCACTTTTGTAGAAG-TTGATGATC
rJMSF019L02+ GCCAATGAAACAGTTTCACTTTTGTAGAAG-TTGATGATCATGTTGTAATATCAGTTA-T
rJMSF024G01+ GCCAATGAAACAGTTTCACTTTTGTAGAAG-TTGATGATCATGTTGTAATATCAGTTA-T
rJMSF002C19+ GCCAATGAAACAGTTTCACTTTTGTAGAAG-TTGATGATCATGTTGTAATATCAGTTA-T
rJMSF010B09+ GCCAATGAAACAGTTTCACTTTNGTNGAAGCNTGATAATCACGTTGTAATATCAGTTACT
                      ____________________________________________________________
consensus GCCAATGAAACAGTTTCACTTTTGTAGAAG-TTGATGATCATGTTGTAATATCAGTTA-T
 
. : . : . : . : . : . :
rJMSF019L02+ TTGATGATTAGTAGTTTCACACACTGCAAAAT
rJMSF024G01+ TTGATGATTAGTAGTTTCACACACTGCAAAAT
rJMSF002C19+ TTGATGATTAGTAGTTTCACACACTGCAAAAT-TTTGGCCAACTGACTTTCAAAGGGACA
rJMSF010B09+ TTGATGATTAGTAGTTTCACACACTGCAAAATCTTTGGCCAACTGACTTTCAAAGGGACA
                      ____________________________________________________________
consensus TTGATGATTAGTAGTTTCACACACTGCAAAATCTTTGGCCAACTGACTTTCAAAGGGACA
 
. : . : . : . : . : . :
rJMSF002C19+ ACAGATAGTTGCAGCATTGCATTGCGGCAGAACA
rJMSF010B09+ ACAGATAGTTGCAGCATTGCATTGCGGCAGAACATGTATATAATTTCTTAAGAGGNGTCC
                      ____________________________________________________________
consensus ACAGATAGTTGCAGCATTGCATTGCGGCAGAACATGTATATAATTTCTTAAGAGGNGTCC