| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF008J13 | Sequence | 410 | 002323 (5) | dbj|BAO49700.1| | 2e-67 | nuclear pore complex protein Nup93b [Nicotiana benthamiana] | 766 | 001290 (3) | ref|XP_009796341.1| | 2e-43 | PREDICTED: uncharacterized protein At2g41620 isoform X1 [Nicotiana sylvestris] |
| JMSF019F17 | Sequence | 446 | 002323 (5) | dbj|BAO49700.1| | 3e-78 | nuclear pore complex protein Nup93b [Nicotiana benthamiana] | 733 | 001290 (3) | ref|XP_009796342.1| | 3e-87 | PREDICTED: uncharacterized protein At2g41620 isoform X2 [Nicotiana sylvestris] |
| JMSF032D18 | Sequence | 678 | 002323 (5) | dbj|BAO49699.1| | 6e-118 | nuclear pore complex protein Nup93a [Nicotiana benthamiana] | 818 | 001290 (3) | ref|XP_009796341.1| | 3e-81 | PREDICTED: uncharacterized protein At2g41620 isoform X1 [Nicotiana sylvestris] |
This contig is upended
. : . : . : . : . : . :
rJMSF019F17+ TGATGCAATA
rJMSF032D18+ TTCAGCAGCATTAGATACAACAAATAAGTGCTTATNTGATGCAATA
____________________________________________________________
consensus TTCAGCAGCATTAGATACAACAAATAAGTGCTTATNTGATGCAATA
. : . : . : . : . : . :
rJMSF019F17+ TGTGCCCTATCACGTGGAAGGTTGGATGGGGAGAGCCAGGTTTCTGCACTCATTCATTCT
rJMSF032D18+ TGTGCCCTATCACG-GGAAGGTTGGATGGGGAGAGCCAGGTTTCTGCACTCATTCATTCT
____________________________________________________________
consensus TGTGCCCTATCACGTGGAAGGTTGGATGGGGAGAGCCAGGTTTCTGCACTCATTCATTCT
. : . : . : . : . : . :
rJMSF019F17+ GGAAATGAGATTTTGGAGACATTCAAGTATTATCCTGATATCAGTCCTCAAGAGAGAGAA
rJMSF032D18+ GGAAATGAGATTTTGGAGACATTCAAGTATTATCCTGATATCAGTCCTCAAGAGAGAGAA
____________________________________________________________
consensus GGAAATGAGATTTTGGAGACATTCAAGTATTATCCTGATATCAGTCCTCAAGAGAGAGAA
. : . : . : . : . : . :
rJMSF019F17+ AAGGTTTTGGAACAGCAAACTGTGTTGAGACAGCTTGAGGCAGTCCTGTCCATTCATAAC
rJMSF032D18+ AAGGTTTTGGAACAGCAAACTGTGTTGAGACAGCTTGAGGCAGTCCTGTCCATTCATAAC
____________________________________________________________
consensus AAGGTTTTGGAACAGCAAACTGTGTTGAGACAGCTTGAGGCAGTCCTGTCCATTCATAAC
. : . : . : . : . : . :
rJMSF019F17+ TTAGCAAGAATTGGAAACCATTTGGATGCTTTGAAGGAAGTAGCAAAACTACCATTTCTT
rJMSF032D18+ TTAGCAAGAATTGGAAACCATTTGGATGCTTTGAAGGAAGTAGCAAAACTACCATTTCTT
rJMSF008J13+ TTGAAGGAAGTAGCAAAACTACCATTTCTT
____________________________________________________________
consensus TTAGCAAGAATTGGAAACCATTTGGATGCTTTGAAGGAAGTAGCAAAACTACCATTTCTT
. : . : . : . : . : . :
rJMSF019F17+ CCTTTGGATCCAAGGACACCGGGTTTTGCCACTGATGTCTTCCAAAATTTGTCTCCCCAT
rJMSF032D18+ CCTTTGGATCCAAGGACACCGGGTTTTGCCACTGATGTCTTCCAAAATTTGTCTCCCCAT
rJMSF008J13+ CCTTTGGATCCAAGGACACCGGGTTTTGCCACTGATGTCTTCCAAAATTTGTCTCCCCAT
____________________________________________________________
consensus CCTTTGGATCCAAGGACACCGGGTTTTGCCACTGATGTCTTCCAAAATTTGTCTCCCCAT
. : . : . : . : . : . :
rJMSF019F17+ GTCCAAGCATGTGTTCCAGACCTTCTGAAGGTTGCTCTTCACTGTCTAGACAATGTTAGA
rJMSF032D18+ GTCCAAGCATGTGTTCCAGACCTTCTGAAGGTTGCTCTTCACTGTCTAGACAATGTTAGA
rJMSF008J13+ GTCCAAGCATGTGTTCCAGACCTTCTGAAGGTTGCTCTTCACTGTCTAGACAATGTTAGA
____________________________________________________________
consensus GTCCAAGCATGTGTTCCAGACCTTCTGAAGGTTGCTCTTCACTGTCTAGACAATGTTAGA
. : . : . : . : . : . :
rJMSF019F17+ GATACAGATGGATCATTGCGAGCTTTAAGGGAAAAGATAGCGAACTTTCTTGCCAACAAC
rJMSF032D18+ GATACAGATGGATCATTGCGAGCTTTAAGGGAAAAGATAGCGAACTTTCTTGCCAACAAC
rJMSF008J13+ GATACAGATGGATCATTGCGAGCTTTAAGGGAAAAGATAGCGAACTTTCTTGCCAACAAC
____________________________________________________________
consensus GATACAGATGGATCATTGCGAGCTTTAAGGGAAAAGATAGCGAACTTTCTTGCCAACAAC
. : . : . : . : . : . :
rJMSF019F17+ TTGGGTAGGAACTGGCCTCGTGATCTATATGAAAAGGTTGCTCAACGTATATGAAGTGCA
rJMSF032D18+ TTGGGTAGGAACTGGCCTCGTGATCTATATGAAAAGGTTGCTCAACGTATATGAAGTGCA
rJMSF008J13+ TTGGGTAGGAACTGGCCTCGTGATCTATATGAAAAGGTTGCTCAACGTATATGAAGTGCA
____________________________________________________________
consensus TTGGGTAGGAACTGGCCTCGTGATCTATATGAAAAGGTTGCTCAACGTATATGAAGTGCA
. : . : . : . : . : . :
rJMSF019F17+ TTGCCTCGACCCGTTTTGTGCATTGCCACTGAGGTTTATTATATTATATATTAGTTTCGG
rJMSF032D18+ TTGCCTCGACCCGTTTTGTGCATTGCCACTGAGGTTTATTATATTATATATTAGTTTCGG
rJMSF008J13+ TTGCCTCGACCCGTTTTGTGCATTGCCACTGAGGTTTATTATATTATATATTAGTTTCGG
____________________________________________________________
consensus TTGCCTCGACCCGTTTTGTGCATTGCCACTGAGGTTTATTATATTATATATTAGTTTCGG
. : . : . : . : . : . :
rJMSF019F17+ CGTAGGTGCTAAAGTGTTGAATTTTCCCGTCGTCAGTCAATGTATTTGAATCGCTCTAAA
rJMSF032D18+ CGTAGGTGCTAAAGTGTTGAATTTTCCCGTCGTCAGTCAATGTATTTGAATCGCTCTAAA
rJMSF008J13+ CGTAGGTGCTAAAGTGTTGAATTTTCCCGTCGTCAGTCAATGTATTTGAATCGCTCTAAA
____________________________________________________________
consensus CGTAGGTGCTAAAGTGTTGAATTTTCCCGTCGTCAGTCAATGTATTTGAATCGCTCTAAA
. : . : . : . : . : . :
rJMSF019F17+ TATAATTTCTCTTGCATTGGCCATCAGTTCTGATAAGGTATATGCTGACTTTGTAATAGA
rJMSF032D18+ TATAATTTCTCTTGCATTGGCCATCAGTTCTGATAAGGTATATGCTGACTTTGTAATAGA
rJMSF008J13+ TATGATTTCTCTTGCATTGGCCATCAGTTCTGATAAGGTATATGCTGACTTTGTAATAGA
____________________________________________________________
consensus TATAATTTCTCTTGCATTGGCCATCAGTTCTGATAAGGTATATGCTGACTTTGTAATAGA
. : . : . : . : . : . :
rJMSF019F17+ AAACCCTCCATCCGCCCCCATTGACACCCCTACCGTACCAAACAAAACTCAAAC
rJMSF032D18+ AAACCCTCCATCCGCCCCCATTGACACCCCTACCGTACCAAACAAAACTCAAACTGGAGA
rJMSF008J13+ AAACCCTCCATCCGCCCCCATTGACACCCCTACCGTACCAAACAAAACTCAAACTGGAGA
____________________________________________________________
consensus AAACCCTCCATCCGCCCCCATTGACACCCCTACCGTACCAAACAAAACTCAAACTGGAGA
. : . : . : . : . : . :
rJMSF032D18+ TTTGTATCTGGTGATGCCCGAGGCGTATTGAGATCTCTGGTCAACGGAATC
rJMSF008J13+ TTTGTATCTGGTGATGCCCGAGGCGTATTGAGATCTCTGGTCAACGGAATCTGTAATTGT
____________________________________________________________
consensus TTTGTATCTGGTGATGCCCGAGGCGTATTGAGATCTCTGGTCAACGGAATCTGTAATTGT
. : . : . : . : . : . :
rJMSF008J13+ AATCTGTTGTTTTCATCCTCATTTGATTAATTCTTAGTCTTCAAATTCCACATATACTGA
____________________________________________________________
consensus AATCTGTTGTTTTCATCCTCATTTGATTAATTCTTAGTCTTCAAATTCCACATATACTGA
. : . : . : . : . : . :
rJMSF008J13+ AGCAAACAATGCCAATGTGTTTGATAATATGCATTGTTGCAAGTTCAACAGAAATCTCCA
____________________________________________________________
consensus AGCAAACAATGCCAATGTGTTTGATAATATGCATTGTTGCAAGTTCAACAGAAATCTCCA
. : . : . : . : . : . :
rJMSF008J13+ GGTGAAAAAAATCCTAATTGAATGCCTTGAAAGGGATGACCCAAGTGGATGGAGAATGAT
____________________________________________________________
consensus GGTGAAAAAAATCCTAATTGAATGCCTTGAAAGGGATGACCCAAGTGGATGGAGAATGAT