Contig 001285:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF004G07Sequence383007817 (8)382001285 (9)
JMSF007N06Sequence355007817 (8)712001285 (9)
JMSF014F13Sequence527007817 (8)801001285 (9)
JMSF027O02Sequence624007817 (8)792001285 (9)
JMSF032E02Sequence682007817 (8)gb|ACB28471.1|1e-06polyprotein, partial [Ananas comosus]674001285 (9)
JMSF046H11Sequence747007817 (8)gb|ACB28470.1|2e-06polyprotein, partial [Ananas comosus]807001285 (9)
JMSF046H12Sequence177001285 (9)
JMSF047L13Sequence655007817 (8)gb|ACB28470.1|1e-06polyprotein, partial [Ananas comosus]730001285 (9)
JMSF047P23Sequence671007817 (8)gb|ACB28470.1|1e-06polyprotein, partial [Ananas comosus]688001285 (9)

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF046H11+ AAACAAATGGATGGTCTTAGACCATTTACTACACTTGAGACAACATT
                      ____________________________________________________________
consensus AAACAAATGGATGGTCTTAGACCATTTACTACACTTGAGACAACATT
 
. : . : . : . : . : . :
rJMSF027O02+ AGAAAGACACCATTTGAGACATTTTTGTCTTT
rJMSF014F13+ TTGAAAACCCAAGAAAGACACCATTTGAGACATTTTTGTCTTT
rJMSF046H11+ TGAGACATTTTAGTCTTTGAAAACCCCAAGAAAGACACCATTTGAGACATTTTTGTCTTT
rJMSF047L13+ TTTTGTCTTN
                      ____________________________________________________________
consensus TGAGACATTTTAGTCTTTTGAAACCCCAAGAAAGACACCATTTGAGACATTTTTGTCTTT
 
. : . : . : . : . : . :
rJMSF027O02+ GAAAACCCAATTTAAATTTCTCTTTACCCAGACTTTGAACAAAACATTATAAAATTCCTT
rJMSF014F13+ GAAAACCCAATTTAAATTTCTCTTTACCCAGACTTTGAACAAAACATTATAAAATTCCTT
rJMSF046H11+ GAAAACCCAATTTAAATTTCTCTTTACCCAGACTTTGAACAAAACATTATAAAATTCCTT
rJMSF047P23+ TTACCCAGACTTTGAACAAACCATTATAAAATTCCTT
rJMSF047L13+ GAAAACCCAATTTAAATTTCTCTTTACCCAGACCTTGAACAAACCATTATAAAATTCCTT
rJMSF032E02+ TCTCTTTACCCAGACTTTGAACAAAACATTATAAAATTCCTT
rJMSF007N06+ CCAATTTAAATTTCTCTTTACCCAGACTTTGAACAAAACATTATAAAATTCCTT
                      ____________________________________________________________
consensus GAAAACCCAATTTAAATTTCTCTTTACCCAGACTTTGAACAAAACATTATAAAATTCCTT
 
. : . : . : . : . : . :
rJMSF027O02+ CATTCCATCTGATAGATGCCTCCTTGGAAGGCATAAATGAGGAATATACAGACTTCTCTC
rJMSF014F13+ CATTCCATCTGATAGATGCCTCCTTGGAAGGCATAAATGAGGAATATACAGACTTCTCTC
rJMSF046H11+ CATTCCATCTGATAGATGCCTCCTTGGAAGGCATAAATGAGGAATATACAGACTTCTCTC
rJMSF047P23+ CATTCCATCTGATAGATGCCTCCTTGGAAGGCATAAATGAGGAATATACAGACTTCTCTC
rJMSF047L13+ CATTCCATCTGATAGATGCCTCCTTGGAAGGCATAAATGAGGAATATACAGACTTCTCTC
rJMSF032E02+ CATTCCATCTGATAGATGCCTCCTTGGAAGGCATAAATGAGGAATATACAGACTTCTCTC
rJMSF007N06+ CATTCCATCTGATAGATGCCTCCTTGGAAGGCATAAATGAGGAATATACAGACTTCTCTC
                      ____________________________________________________________
consensus CATTCCATCTGATAGATGCCTCCTTGGAAGGCATAAATGAGGAATATACAGACTTCTCTC
 
. : . : . : . : . : . :
rJMSF027O02+ GGTCCAAAATATTGGACCAAATTAAACACTATTAAATTTGAAGAACCACTAGAGACAATT
rJMSF014F13+ GGTCCAAAATATTGGACCAAATTAAACACTATTAAATTTGAAGAACCACTAGAGACAATT
rJMSF046H11+ GGTCCAAAATATTGGACCAAATTAAACACTATTAAATTTGAAGAACCACTAGAGACAATT
rJMSF047P23+ GGTCCAAAATATTGGACCAAATTAAACACTATTAAATTTGAAGAACCACTAGAGACAATT
rJMSF047L13+ GGTCCAAAATATTGGACCAAATTAAACACTATTAAATTTGAAGAACCACTAGAGACAATT
rJMSF032E02+ GGTCCAAAATATTGGACCAAATTAAACACTATTAAATTTGAAGAACCACTAGAGACAATT
rJMSF007N06+ GGTCCAAAATATTGGGCCAAATTAAACACTATTAAATTTGAAGAACCACTAGAGACAATT
                      ____________________________________________________________
consensus GGTCCAAAATATTGGACCAAATTAAACACTATTAAATTTGAAGAACCACTAGAGACAATT
 
. : . : . : . : . : . :
rJMSF027O02+ GGATCTAGGTTCGAGCTAGTTAACGCAAGCCAGCTCAACATTTGGATCAAGACTGTCTTC
rJMSF014F13+ GGATCTAGGTTCGAGCTAGTTAACGCAAGCCAGCTCAACATTTGGATCAAGACTGTCTTC
rJMSF046H11+ GGATCTAGGTTCGAGCTAGTTAACGCAAGCCAGCTCAACATTTGGATCAAGACTGTCTTC
rJMSF047P23+ GGATCTAGGTTCGAGCTAGTTAACGCAAGCCAGCTCAACATTTGGATCAAGACTGTCTTC
rJMSF047L13+ GGATCTAGGTTCGAGCTAGTTAACGCAAGCCAGCTCAACATTTGGATCAAGACTGTCTTC
rJMSF032E02+ GGATCTAGGTTCGAGCTAGTTAACGCAAGCCAGCTCAACATTTGGATCAAGACTGTCTTC
rJMSF007N06+ GGATCTAGGTTCGAGCTAGTTAACGCAAGCCAGCTCAACATTTGGATCAAGACTGTCTTC
                      ____________________________________________________________
consensus GGATCTAGGTTCGAGCTAGTTAACGCAAGCCAGCTCAACATTTGGATCAAGACTGTCTTC
 
. : . : . : . : . : . :
rJMSF027O02+ TTTTGACTCATCCAAAAAAGGAGATGTGACTGAAAGAAAGAAGATAAGAAAAACCA-ACT
rJMSF014F13+ TTTTGACTCATCCAAAAAAGGAGATGTGACTGAAAGAAAGAAGATAAGAAAAACCA-ACT
rJMSF046H11+ TTTTGACTCATCCAAAAAAGGAGATGTGACTGAAAGAAAGAAGATAAGAAAAACCA-ACT
rJMSF047P23+ TTTTGACTCATCCAAAAAAGGAGATGTGACTGAAAGAAAGAAGATAAGAAAAACCA-ACT
rJMSF047L13+ TTTTGACTCATCCAAAAAAGGAGATGTGACTGAAAGAAAGAAGATAAGAAAAACCA-ACT
rJMSF032E02+ TTTTGACTCATCCAAAAAAGGAGATGTGACTGAAAGAAAGAAGATAAGAAAAACCA-ACT
rJMSF046H12+ CTCATCCAACAANGGAGATGTGANTGAAAGAAAGAAGATAAGAAAAACCACACT
rJMSF007N06+ TTTTGACTCATCCAAAAAAGGAGATGTGACTGAAAGAAAGAAGATAAGAAAAACCA-ACT
                      ____________________________________________________________
consensus TTTTGACTCATCCAAAAAAGGAGATGTGACTGAAAGAAAGAAGATAAGAAAAACCA-ACT
 
. : . : . : . : . : . :
rJMSF027O02+ GGGAATCTAGACTGTCAGCTGTAATTTTACTTTTCAAAAGGTTAAATCTTCAATCTTAAG
rJMSF014F13+ GGGAATCTAGACTGTCAGCTGTAATTTTACTTTTCAAAAGGTTAAATCTTCAATCTTAAG
rJMSF046H11+ GGGAATCTAGACTGTCAGCTGTAATTTTACTTTTCAAAAGGTTAAATCTTCAATCTTAAG
rJMSF047P23+ GGGAATCTAGACTGTCAGCTGTAATTTTACTTTTCAAAAGGTTAAATCTTCAATCTTAAG
rJMSF047L13+ GGGAATCTAGACTGTCAGCTGTAATTTTACTTTTCAAAAGGTTAAATCTTCAATCTTAAG
rJMSF032E02+ GGGAATCTAGACTGTCAGCTGTAATTTTACTTTTCAAAAGGTTAAATCTTCAATCTTAAG
rJMSF004G07+ CAAAAGGGTCAATCTTCAATCTTAAG
rJMSF046H12+ GGGAATCTANACNGTCAGCNGTAATTNTACTTTTCCAAAGGNTAAATCTTCAATCCTAAG
rJMSF007N06+ GGGAATCTAGACTGTCAGCTGTAATTTTACTTTTCAAAAGGTTAAATCTTCAATCTTAAG
                      ____________________________________________________________
consensus GGGAATCTAGACTGTCAGCTGTAATTTTACTTTTCAAAAGGTTAAATCTTCAATCTTAAG
 
. : . : . : . : . : . :
rJMSF027O02+ GGTTTCATCCTGACCAGACAGAACAACTGGGAGAAAAGGGAAGTCCACATCAACCGTAAC
rJMSF014F13+ GGTTTCATCCTGACCAGACAGAACAACTGGGAGAAAAGGGAAGTCCACATCAACCGTAAC
rJMSF046H11+ GGTTTCATCCTGACCAGACAGAACAACTGGGAGAAAAGGGAAGTCCACATCAACCGTAAC
rJMSF047P23+ GGTTTCATCCTGACCAGACAGAACAACTGGGAGAAAAGGGAAGTCCACATCAACCGTAAC
rJMSF047L13+ GGTTTCATCCTGACCAGACAGAACAACTGGGAGAAAAGGGAAGTCCACATCAACCGTAAC
rJMSF032E02+ GGTTTCATCCTGACCAGACAGAACAACTGGGAGAAAAGGGAAGTCCACATCAACCGTAAC
rJMSF004G07+ GGTTTCATCCTGACCAGACAGAACAACTGGGAGAAAAGGGAAGTCCACATCAACCGTAAC
rJMSF046H12+ GGTTTCATCCTGACCAGACAGAACAACTGGGAGAAAAGGGANGTCCACATCAACCGTAAC
rJMSF007N06+ GGTTTCATCCTGACCAGACAGAACAACTGGGAGAAAAGGGAAGTCCACATCAACCGTAAC
                      ____________________________________________________________
consensus GGTTTCATCCTGACCAGACAGAACAACTGGGAGAAAAGGGAAGTCCACATCAACCGTAAC
 
. : . : . : . : . : . :
rJMSF027O02+ TTTTGACATTTGGGCACTGAAGGAGACTAGGGTGATGAAGTGATAACTACTCTTGAAAAA
rJMSF014F13+ TTTTGACATTTGGGCACTGAAGGAGACTAGGGTGATGAAGTGATAACTACTCTTGAAAAA
rJMSF046H11+ TTTTGACATTTGGGCACTGAAGGAGACTAGGGTGATGAAGTGATAACTACTCTTGAAAAA
rJMSF047P23+ TTTTGACATTTGGGCACTGAAGGAGACTAGGGTGATGAAGTGATAACTACTCTTGAAAAA
rJMSF047L13+ TTTTGACATTTGGGCACTGAAGGAGACTAGGGTGATGAAGTGATAACTACTCTTGAAAAA
rJMSF032E02+ TTTTGACATTTGGGCACTGAAGGAGACTAGGGTGATGAAGTGATAACTACTCTTGAAAAA
rJMSF004G07+ TTTTGACATTTGGGCACTGAAGGAGACTAGGGTGATGAAGTGATAACTACTCTTGAAAAA
rJMSF046H12+ TTT
rJMSF007N06+ TTTTGACATTTGGGCACTGAAGGAGACTAGGGTGATGAAGTGATAACTACTCTTGAAAAA
                      ____________________________________________________________
consensus TTTTGACATTTGGGCACTGAAGGAGACTAGGGTGATGAAGTGATAACTACTCTTGAAAAA
 
. : . : . : . : . : . :
rJMSF027O02+ TAAGACTAAGGAAGGGGCATGTCCCTTTCAACTTTATTATATACGGAGTATGTATGTATG
rJMSF014F13+ TAAGACTAAGGAAGGGGCATGTCCCTTTCAACTTTATTATATACGGAGTATGTATGTATG
rJMSF046H11+ TAAGACTAAGGAAGGGGCATGTCCCTTTCAACTTTATTATATACGGAGTATGTATGTATG
rJMSF047P23+ TAAGACTAAGGAAGGGGCATGTCCCTTTCAACTTTATTATATACGGAGTATGTATGTATG
rJMSF047L13+ TAAGACTAAGGAAGGGGCATGTCCCTTTCAACTTTATTATATACGGAGTATGTATGTATG
rJMSF032E02+ TAAGACTAAGGAAGGGGCATGTCCCTTTCAACTTTATTATATACGGAGTATGTATGTATG
rJMSF004G07+ TAAGACTAAGGAAGGGGCATGTCCCTTTCAACTTTATTATATACGGAGTATGTATGTATG
rJMSF007N06+ TAAGACTAAGGAAGGGGCATGTCCCTTTCAACTTTATTATATACGGAGTATGTATGTATG
                      ____________________________________________________________
consensus TAAGACTAAGGAAGGGGCATGTCCCTTTCAACTTTATTATATACGGAGTATGTATGTATG
 
. : . : . : . : . : . :
rJMSF027O02+ TATGTATATATATGTAATGTATGTGTGTATGGATGGATGTATGTTTGTGTGTTTGTTTTG
rJMSF014F13+ TATGTATATATATGTAATGTATGTGTGTATGGATGGATGTATGTTTGTGTGTTTGTTTTG
rJMSF046H11+ TATGTATATATATGTAATGTATGTGTGTATGGATGGATGTATGTTTGTGTGTTTGTTTTG
rJMSF047P23+ TATGTATATATATGTAATGTATGTGTGTATGGATGGATGTATGTTTGTGTGTTTGTTTTG
rJMSF047L13+ TATGTATATATATGTAATGTATGTGTGTATGGATGGATGTATGTTTGTGTGTTTGTTTTG
rJMSF032E02+ TATGTATATATATGTAATGTATGTGTGTATGGATGGATGTATGTTTGTGTGTTTGTTTTG
rJMSF004G07+ TATGTGTATATATGTAATGTATGTGTGTATGGATGGATGTATGTTTGTGTGTTTGTTTTG
rJMSF007N06+ TATGTATATATATGTAATGTATGTGTGTATGGATGGATGTATGTTTGTGTGTTTGTTTTG
                      ____________________________________________________________
consensus TATGTATATATATGTAATGTATGTGTGTATGGATGGATGTATGTTTGTGTGTTTGTTTTG
 
. : . : . : . : . : . :
rJMSF027O02+ GAGAATGTATGTGTGTGTTAAGGAATAGATCTTTTAAAAATAAGGCTAAGAAAGGAGGCA
rJMSF014F13+ GAGAATGTATGTGTGTGTTAAGGAATAGATCTTTTAAAAATAAGGCTAAGAAAGGAGGCA
rJMSF046H11+ GAGAATGTATGTGTGTGTTAAGGAATAGATCTTTTAAAAATAAGGCTAAGAAAGGAGGCA
rJMSF047P23+ GAGAATGTATGTGTGTGTTAAGGAATAGATCTTTTAAAAATAAGGCTAAGAAAGGAGGCA
rJMSF047L13+ GAGAATGTATGTGTGTGTTAAGGAATAGATCTTTTAAAAATAAGGCTAAGAAAGGAGGCA
rJMSF032E02+ GAGAATGTATGTGTGTGTTAAGGAATAGATCTTTTAAAAATAAGGCTAAGAAAGGAGGCA
rJMSF004G07+ GAGAATGTANGTGNGTGTTAAGGAATAGATCTTTTAAAAATAAGGCTAAGAAAGGAGGCA
rJMSF007N06+ GAGAATGTATGTGTGTGTTAAGGAATAGATCTTTTAAAAATAAGGCTAAGAAAGGAGGCA
                      ____________________________________________________________
consensus GAGAATGTATGTGTGTGTTAAGGAATAGATCTTTTAAAAATAAGGCTAAGAAAGGAGGCA
 
. : . : . : . : . : . :
rJMSF027O02+ TGTTCCT-TTCAATATGTTC
rJMSF014F13+ TGTTCCT-TTCAATATGTTC
rJMSF046H11+ TGTTCCT-TTCAATATGTTCTTGTGC
rJMSF047P23+ TGTTCCT-TTCAATATGTTCTTGTGCATGTGTCTGAATGTGTGTTT
rJMSF047L13+ TGTTCCT-TTCAATATGTTCTTGTGCATGTGTCTGAATGTGTGTTT
rJMSF032E02+ TGTTCCT-TTCAATATGTTCTTGTGCATGTGTCT
rJMSF004G07+ TGTTCCTCTTCAGTATGTTCTTGTGCATGTGTCTGAATGTGTGTTT
rJMSF007N06+ TGTTCCT-TTCAATATGTTCTTGTGCATGTGTCTGAATGTGTGTTTTAAGAAATAAACTT
                      ____________________________________________________________
consensus TGTTCCT-TTCAATATGTTCTTGTGCATGTGTCTGAATGTGTGTTTTAAGAAATAAACTT