Contig 001281:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF001D13Sequence669001281 (3)ref|XP_007051458.1|1e-41Rho GTPase activating protein with PAK-box/P21-Rho-binding domain [Theobroma ca
JMFF007H09Sequence559005901 (2)753001281 (3)ref|XP_007051458.1|5e-49Rho GTPase activating protein with PAK-box/P21-Rho-binding domain [Theobroma ca
JMSF007E08Sequence260005901 (2)753001281 (3)ref|XP_007051458.1|5e-49Rho GTPase activating protein with PAK-box/P21-Rho-binding domain [Theobroma ca

Alignment

This contig is upended


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rJMFF007H09+                                                                   GAA
rJMFF001D13+                                                                   GAA
rJMSF007E08+                                    CACCCCAGAGCAAGTCATGCATTGCAACACCGAA
                      ____________________________________________________________
consensus                                       CACCCCAGAGCAAGTCATGCATTGCAACACCGAA
 
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rJMFF007H09+          GAAGAGTGTACACATATCGTTAAGCTGCTTCCTCCAACTGATGCTGCGCTGTTCGACTGG
rJMFF001D13+          GAAGAGTGTACACATATCGTTAAGCTGCTTCCTCCAACTGATGCTGCGCTGTTCGACTGG
rJMSF007E08+          GAAGAGTGTACACATATCGTTAAGCTGCTTCCTCCAACTGATGCTGCGCTGTTCGACTGG
                      ____________________________________________________________
consensus             GAAGAGTGTACACATATCGTTAAGCTGCTTCCTCCAACTGATGCTGCGCTGTTCGACTGG
 
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rJMFF007H09+          GCGGTGAATTTGATGGCAGATGTTGTGGAGCACGAGTGTTACAACAAGATGAATGCGAGG
rJMFF001D13+          GCGGTGAATTTGATGGCAGATGTTGTGGAGCACGAGTGTTACAACAAGATGAATGCGAGG
rJMSF007E08+          GCGGTGAATTTGATGGCAGATGTTGTGGAGCACGAGTGTTACAACAAGATGAATGCGAGG
                      ____________________________________________________________
consensus             GCGGTGAATTTGATGGCAGATGTTGTGGAGCACGAGTGTTACAACAAGATGAATGCGAGG
 
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rJMFF007H09+          AATATTGCCATGATTTTTGCCCCTAACATGACCAAGATGGCTGATCCTTTGACAGCTCTG
rJMFF001D13+          AATATTGCCATGATTTTTGCCCCTAACATGACCAAGATGGCTGATCCTTTGACAGCTCTG
rJMSF007E08+          AATATTGCCATGATTTTTGCCCCTAACATGACCAAGATGGCTGATCCTTTGACAGCTCTG
                      ____________________________________________________________
consensus             AATATTGCCATGATTTTTGCCCCTAACATGACCAAGATGGCTGATCCTTTGACAGCTCTG
 
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rJMFF007H09+          ATTCATGCAGTTCAAGTCATGAATTTCCTAAAGACACTTATAACAAAGACCCTTGTGGAA
rJMFF001D13+          ATTCATGCAGTTCAAGTCATGAATTTCCTAAAGACACTTATAACAAAGACCCTTGTGGAA
rJMSF007E08+          ATTCATGCAGTTCAAGTCATGAATTTCCTAAAGACACTTATAACAAAGACCCTTGTGGAA
                      ____________________________________________________________
consensus             ATTCATGCAGTTCAAGTCATGAATTTCCTAAAGACACTTATAACAAAGACCCTTGTGGAA
 
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rJMFF007H09+          CGAGAACGAGAAAACTTAGCTGAAATGGACCAAACACTCCCGATATCATCTGCTGATGAT
rJMFF001D13+          CGAGAACGAGAAAACTTAGCTGAAATGGACCAAACACTCCCGATATCATCTGCTGATGAT
rJMSF007E08+          CGAGAACGAGAAAACTTAGCTGAAATGGACCAAACACTCCCGATATCATCTGCTGATGAT
                      ____________________________________________________________
consensus             CGAGAACGAGAAAACTTAGCTGAAATGGACCAAACACTCCCGATATCATCTGCTGATGAT
 
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rJMFF007H09+          TTTCCCTGCCATTCCCCCGAAGTACTCGCCACCAATAATCTCAAGCTCTCAAGAAGCGTG
rJMFF001D13+          TTTCCCTGCCATTCCCCCGAAGTACTCGCCACCAATAATCTCAAGCTCTCAAGAAGCGTG
rJMSF007E08+          TTTCCCTGCCATTCCCCCGAAGTACTCGCCACCAATAATCTCAAGCTCTCAAGAAGCGTG
                      ____________________________________________________________
consensus             TTTCCCTGCCATTCCCCCGAAGTACTCGCCACCAATAATCTCAAGCTCTCAAGAAGCGTG
 
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rJMFF007H09+          ACGTTGGACAGATGGGAATCGGAATGCTATCATTCCCGCGAAGTACTTCCCGCCAATAAG
rJMFF001D13+          ACGTTGGACAGATGGGAATCGGAATGCTATCATTCCCGCGAAGTACTTCCCGCCAATAAG
rJMSF007E08+          ACGTTGGACAGATGGGAATCGGAATGCTATCATTCCCGCGAAGTACTTCCCGCCAATAAG
                      ____________________________________________________________
consensus             ACGTTGGACAGATGGGAATCGGAATGCTATCATTCCCGCGAAGTACTTCCCGCCAATAAG
 
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rJMFF007H09+          CTCTCGAGAAGCGTGACGTTAGACAGATGGGAATCAGAGCGTTATCATTCCCGCGAAGGA
rJMFF001D13+          CTCTCGAGAAGCGTGACGTTAGACAGATGGGAATCAGAGCGTTATCATTCCCGCGAAGGA
rJMSF007E08+          CTCTCGAGAAGCGTGACGTTAGACAGATGGGAATCAGAGCGTTATCATTCCCGCGAAGGA
                      ____________________________________________________________
consensus             CTCTCGAGAAGCGTGACGTTAGACAGATGGGAATCAGAGCGTTATCATTCCCGCGAAGGA
 
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rJMFF007H09+          CTTGCCACCAATAAGCACAAGCTCTCAAGGAGCTTCACTTTGGACAGATGGGAATCAGAA
rJMFF001D13+          CTTGCCACCAATAAGCACAAGCTCTCAAGGAGCTTCACTTTGGACAGATGGGAATCAGAA
rJMSF007E08+          CTTGCCACCAATAAGCACAAGCTCTCAAGGAGCTTCACTTTGGACAGATGGGAATCAGAA
                      ____________________________________________________________
consensus             CTTGCCACCAATAAGCACAAGCTCTCAAGGAGCTTCACTTTGGACAGATGGGAATCAGAA
 
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rJMFF007H09+          AAGAATGAAGTGAATGGATTGTAAATAATTGAGGAGTTAGGCATC-AGATATTTAATGAA
rJMFF001D13+          AAGAATGAAGTGAATGGATTGTAAATAATTGAGGAGTTAGGCATCGAGATATTTAATGAA
rJMSF007E08+          AAGAATGAAGTGAATGGATTGTAAATAATTGAGGAGTTAGGCATC-AGATATTTAATGAA
                      ____________________________________________________________
consensus             AAGAATGAAGTGAATGGATTGTAAATAATTGAGGAGTTAGGCATC-AGATATTTAATGAA
 
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rJMFF007H09+          GTTTAGATATTCCTGACATTGTGTGTAAGTTGATATACTAGTTAGTTAGAGAAGCTTAAT
rJMFF001D13+          GTTTAGATATTCCTNACATTGTGTGTAAGTTGATATA                       
rJMSF007E08+          GTTTAGATATTCCTGACATTGTGTGTAAGTTGATATACTAGTTAGTTAGAGAAGCTTAAT
                      ____________________________________________________________
consensus             GTTTAGATATTCCTGACATTGTGTGTAAGTTGATATACTAGTTAGTTAGAGAAGCTTAAT
 
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rJMFF007H09+          GTTCATCTACTAATTTAAAATCTAGTTTGATCAACATGTCCGACGGTTATTATGCCCTAA
rJMSF007E08+          GTTCATCTACTAATTTAAAATCTAGTTTGATCAACATGTCCGACGGTTATTATGCCCTAA
                      ____________________________________________________________
consensus             GTTCATCTACTAATTTAAAATCTAGTTTGATCAACATGTCCGACGGTTATTATGCCCTAA