Contig 001277:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF005I19Sequence374010573 (3)ref|XP_010254545.1|8e-40PREDICTED: protein EXECUTER 1, chloroplastic [Nelumbo nucifera] ref|XP_010254546269001277 (2)
JMSF006G22Sequence305010573 (3)272001277 (2)

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF005I19+                                                             AGNGNCAGA
                      ____________________________________________________________
consensus                                                                AGNGNCAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF005I19+          TACAGAAAGCTCGGTTTCTGCTAAATGGCGATGTNTGGNTNACAGCAGGNTTTGACATAA
rJMSF006G22+                                                   ACAGCAGGTTTTGACATAA
                      ____________________________________________________________
consensus             TACAGAAAGCTCGGTTTCTGCTAAATGGCGATGTNTGGNTNACAGCAGGTTTTGACATAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF005I19+          TNTTAGTATTTGGATGATCACAAACACAGCATTTCTCTATTGTACCGTTTNTGAAATTCT
rJMSF006G22+          TCTTAGTATTTGGATGATCACAAACACTGCATTTCTNTATTCTACCGTNTCTGAAATTNT
                      ____________________________________________________________
consensus             TCTTAGTATTTGGATGATCACAAACACTGCATTTCTCTATTGTACCGTTTCTGAAATTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF005I19+          CAGCCTTCCCCGTATNTNTTANNTGGCGGCTCTGTCTCGNCACTNNAAATATACTGCTNT
rJMSF006G22+          CAGCCTTCCCCGTATCTCTTATTTGGCGGCTCTTTCTCGACACTGTAAATATACTGCTTT
                      ____________________________________________________________
consensus             CAGCCTTCCCCGTATCTCTTATTTGGCGGCTCTTTCTCGACACTGTAAATATACTGCTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF005I19+          GTGTATTCAANTCATAAATAGTACTACAGAATTNGATNTTCA-CTGGTGCTTNTGGTGGG
rJMSF006G22+          GTGTATTCAATTCATAAATAGTACTACAGAATTTGATTTTCAGCTGGTGCTTTTGGTGGG
                      ____________________________________________________________
consensus             GTGTATTCAATTCATAAATAGTACTACAGAATTTGATTTTCAGCTGGTGCTTTTGGTGGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF005I19+          AATCGGAC                                                    
rJMSF006G22+          AATCGGACTTATNATAATCTCTGGGCTCTGTAGNGTATATATATATATATATGCATTAAG
                      ____________________________________________________________
consensus             AATCGGACTTATNATAATCTCTGGGCTCTGTAGNGTATATATATATATATATGCATTAAG