clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMSF003F02 | Sequence | 393 | 004935 (3) | ref|XP_006338678.1| | 1e-27 | PREDICTED: sister chromatid cohesion 1 protein 2-like [Solanum tuberosum] | 767 | 001271 (3) | ref|XP_009804306.1| | 9e-45 | PREDICTED: sister chromatid cohesion 1 protein 2 isoform X2 [Nicotiana sylvestr |
JMSF004P14 | Sequence | 218 | 010830 (7) | ref|XP_009775727.1| | 1e-17 | PREDICTED: delta(24)-sterol reductase-like [Nicotiana sylvestris] | 195 | 001271 (3) | ref|XP_009804305.1| | 7e-11 | PREDICTED: sister chromatid cohesion 1 protein 2 isoform X1 [Nicotiana sylvestr |
JMSF042D15 | Sequence | 796 | 004935 (3) | ref|XP_009804305.1| | 4e-71 | PREDICTED: sister chromatid cohesion 1 protein 2 isoform X1 [Nicotiana sylvestr | 760 | 001271 (3) | ref|XP_009804306.1| | 6e-44 | PREDICTED: sister chromatid cohesion 1 protein 2 isoform X2 [Nicotiana sylvestr |
This contig is upended
. : . : . : . : . : . :
rJMSF042D15+ CTGGAAAGTTCAGAAGTTCTCCTNTC
____________________________________________________________
consensus CTGGAAAGTTCAGAAGTTCTCCTNTC
. : . : . : . : . : . :
rJMSF042D15+ TTCCCGAAAGTCTTTTTGGAGCCTTTGATTCCCTGTAGTGCTTTGGTAGACACTAGATTG
rJMSF003F02+ TTTTGGAGCCTTTGATTCCCTGTAGTGCTTTGGTAGACACTAGATTG
____________________________________________________________
consensus TTCCCGAAAGTCTTTTTGGAGCCTTTGATTCCCTGTAGTGCTTTGGTAGACACTAGATTG
. : . : . : . : . : . :
rJMSF042D15+ TTGGTTCACAAGATAGGGAATAGGGCTGAGCCAGTTGATTGTGTGGAAGTTCCTCAGAAT
rJMSF003F02+ NTGGTTCACAAGATAGGGAATAGGGCTGAGCCAGTTGATTGTGTGGAAGTTCCTCAGAAT
____________________________________________________________
consensus TTGGTTCACAAGATAGGGAATAGGGCTGAGCCAGTTGATTGTGTGGAAGTTCCTCAGAAT
. : . : . : . : . : . :
rJMSF042D15+ AAGGGCATACCAGAATCTCCTGCCAAACATGGATCCCAAGAACATACTCCATTTGCTCCT
rJMSF003F02+ AAGGGCATACCAGAATCTCCTGCCAAACATGGATCCCAAGAACATACTCCAATTGCTCCT
____________________________________________________________
consensus AAGGGCATACCAGAATCTCCTGCCAAACATGGATCCCAAGAACATACTCCATTTGCTCCT
. : . : . : . : . : . :
rJMSF042D15+ GGCACACCTGTGACCTTCTCAAACGCATGGAGATTGCATGAAGCGCGAAGATGTGTTGAC
rJMSF003F02+ GGCACACCTGTGACCTTCTCAAACGCATGGAGATTGCATGAAGCGCGAAGATGTGTTGAC
____________________________________________________________
consensus GGCACACCTGTGACCTTCTCAAACGCATGGAGATTGCATGAAGCGCGAAGATGTGTTGAC
. : . : . : . : . : . :
rJMSF042D15+ ATATTGGAGCCTGCAAGCTCTATAGATAAAAGCGCACAACAAGCAGAGGTTCATGAGTTG
rJMSF003F02+ ATATTGGAGCCTGCAAGCTCTATAGATAAAAGCGCACAACAAGCAGAGGTTCATGAGTTG
____________________________________________________________
consensus ATATTGGAGCCTGCAAGCTCTATAGATAAAAGCGCACAACAAGCAGAGGTTCATGAGTTG
. : . : . : . : . : . :
rJMSF042D15+ GATATTAGTTTGATGGATGAGGAGATAAATTCATTTGATGAGGACATCCAGGAGAAATAC
rJMSF003F02+ GATATTAGTTTGATGGATGAGGAGATAAATTCATTTGATGAGGACATCCAGGAGAAATAC
____________________________________________________________
consensus GATATTAGTTTGATGGATGAGGAGATAAATTCATTTGATGAGGACATCCAGGAGAAATAC
. : . : . : . : . : . :
rJMSF042D15+ AAATGTTCTGTGAGAACAAGAAAGGTTGCAAGGTATCTGCATAGAAATTTCTTAGCTCAA
rJMSF003F02+ AAATGTTCTGTGAGAACAAGAAAGGTTGCAAGGTATCTGCATAGAAATTTCTTAGCTCAA
____________________________________________________________
consensus AAATGTTCTGTGAGAACAAGAAAGGTTGCAAGGTATCTGCATAGAAATTTCTTAGCTCAA
. : . : . : . : . : . :
rJMSF042D15+ AATGGTGAAGCTGTGAACTTATCTCAGGCCCTGAAAGTAAAAACCAAAAAAGCAAGTGCA
rJMSF004P14+ CTGAAAGTNAAAACCAAAAAAGCAAGTGCA
rJMSF003F02+ AATGGTGAAGCTGTGAACTTATCTCAGGCCCTGAAAGTAAAAACCAAAAAAGCAAGTGCA
____________________________________________________________
consensus AATGGTGAAGCTGTGAACTTATCTCAGGCCCTGAAAGTAAAAACCAAAAAAGCAAGTGCA
. : . : . : . : . : . :
rJMSF042D15+ AGGCTGTTCTATGAGATACTGGTCTTGAAAACAGGAGGTTGGATAGATGTGCAGCAGGAT
rJMSF004P14+ AGGCTGTTCTATGAGATACTGGTCTTGAAAACAGGAGGTGGGATAGATGTGCAGCAGGAT
rJMSF003F02+ AGGCTGTTCTATGAGATACTGGTCTTGAAAACAGGAGGTTGGATAGATGTGCAGCAGGAT
____________________________________________________________
consensus AGGCTGTTCTATGAGATACTGGTCTTGAAAACAGGAGGTTGGATAGATGTGCAGCAGGAT
. : . : . : . : . : . :
rJMSF042D15+ AACGCGTATGGTGATATTTGTGTGCTCGAGTCTCCTAACCTGAAGCAGACTTTTGCAGCT
rJMSF004P14+ AACGCGTATGGTGATATTTGTGTGCTCGAGTCTCCTAACCTGAAGCAGACTTNTGCAGCT
rJMSF003F02+ AACGCGTATGGTGATATTTGTGTGCTCGAGTCTCCTAACCTGAAGCAGACTTTTGCAGCT
____________________________________________________________
consensus AACGCGTATGGTGATATTTGTGTGCTCGAGTCTCCTAACCTGAAGCAGACTTTTGCAGCT
. : . : . : . : . : . :
rJMSF042D15+ GAGGTCGCAAACTAGGGCAATTGAATCGGTCTCATTAGGGAAGCAGATGTAGCATACGGC
rJMSF004P14+ GAGGTCGCAAACTNGGGCAATTGAATCGGTCTCATTAGGGAAGC
rJMSF003F02+ GAGGTCGCAAACTAGGGCAATTGAATCGGTCTCATTAGGGAAGCAGATGTAGCATATGGC
____________________________________________________________
consensus GAGGTCGCAAACTAGGGCAATTGAATCGGTCTCATTAGGGAAGCAGATGTAGCATATGGC
. : . : . : . : . : . :
rJMSF042D15+ ACAGAAGTAGAANCAGGGTTACTTCCTTTAAACCATGAATACACATGTACATGTATATGT
rJMSF003F02+ ACAGAAGTAGAA-CAGGGTTACTTCCTTTAAACCATGAATACACATGTACATGTATATGT
____________________________________________________________
consensus ACAGAAGTAGAANCAGGGTTACTTCCTTTAAACCATGAATACACATGTACATGTATATGT
. : . : . : . : . : . :
rJMSF042D15+ AGTAGAGAGCTCAG
rJMSF003F02+ AGTAGAGAGCTCAGATAATTTACTTTGGATAAGTAATTAGTGTTTTAATAAACAACCCAA
____________________________________________________________
consensus AGTAGAGAGCTCAGATAATTTACTTTGGATAAGTAATTAGTGTTTTAATAAACAACCCAA