Contig 001271:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF003F02Sequence393004935 (3)ref|XP_006338678.1|1e-27PREDICTED: sister chromatid cohesion 1 protein 2-like [Solanum tuberosum]767001271 (3)ref|XP_009804306.1|9e-45PREDICTED: sister chromatid cohesion 1 protein 2 isoform X2 [Nicotiana sylvestr
JMSF004P14Sequence218010830 (7)ref|XP_009775727.1|1e-17PREDICTED: delta(24)-sterol reductase-like [Nicotiana sylvestris]195001271 (3)ref|XP_009804305.1|7e-11PREDICTED: sister chromatid cohesion 1 protein 2 isoform X1 [Nicotiana sylvestr
JMSF042D15Sequence796004935 (3)ref|XP_009804305.1|4e-71PREDICTED: sister chromatid cohesion 1 protein 2 isoform X1 [Nicotiana sylvestr760001271 (3)ref|XP_009804306.1|6e-44PREDICTED: sister chromatid cohesion 1 protein 2 isoform X2 [Nicotiana sylvestr

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF042D15+ CTGGAAAGTTCAGAAGTTCTCCTNTC
                      ____________________________________________________________
consensus CTGGAAAGTTCAGAAGTTCTCCTNTC
 
. : . : . : . : . : . :
rJMSF042D15+ TTCCCGAAAGTCTTTTTGGAGCCTTTGATTCCCTGTAGTGCTTTGGTAGACACTAGATTG
rJMSF003F02+ TTTTGGAGCCTTTGATTCCCTGTAGTGCTTTGGTAGACACTAGATTG
                      ____________________________________________________________
consensus TTCCCGAAAGTCTTTTTGGAGCCTTTGATTCCCTGTAGTGCTTTGGTAGACACTAGATTG
 
. : . : . : . : . : . :
rJMSF042D15+ TTGGTTCACAAGATAGGGAATAGGGCTGAGCCAGTTGATTGTGTGGAAGTTCCTCAGAAT
rJMSF003F02+ NTGGTTCACAAGATAGGGAATAGGGCTGAGCCAGTTGATTGTGTGGAAGTTCCTCAGAAT
                      ____________________________________________________________
consensus TTGGTTCACAAGATAGGGAATAGGGCTGAGCCAGTTGATTGTGTGGAAGTTCCTCAGAAT
 
. : . : . : . : . : . :
rJMSF042D15+ AAGGGCATACCAGAATCTCCTGCCAAACATGGATCCCAAGAACATACTCCATTTGCTCCT
rJMSF003F02+ AAGGGCATACCAGAATCTCCTGCCAAACATGGATCCCAAGAACATACTCCAATTGCTCCT
                      ____________________________________________________________
consensus AAGGGCATACCAGAATCTCCTGCCAAACATGGATCCCAAGAACATACTCCATTTGCTCCT
 
. : . : . : . : . : . :
rJMSF042D15+ GGCACACCTGTGACCTTCTCAAACGCATGGAGATTGCATGAAGCGCGAAGATGTGTTGAC
rJMSF003F02+ GGCACACCTGTGACCTTCTCAAACGCATGGAGATTGCATGAAGCGCGAAGATGTGTTGAC
                      ____________________________________________________________
consensus GGCACACCTGTGACCTTCTCAAACGCATGGAGATTGCATGAAGCGCGAAGATGTGTTGAC
 
. : . : . : . : . : . :
rJMSF042D15+ ATATTGGAGCCTGCAAGCTCTATAGATAAAAGCGCACAACAAGCAGAGGTTCATGAGTTG
rJMSF003F02+ ATATTGGAGCCTGCAAGCTCTATAGATAAAAGCGCACAACAAGCAGAGGTTCATGAGTTG
                      ____________________________________________________________
consensus ATATTGGAGCCTGCAAGCTCTATAGATAAAAGCGCACAACAAGCAGAGGTTCATGAGTTG
 
. : . : . : . : . : . :
rJMSF042D15+ GATATTAGTTTGATGGATGAGGAGATAAATTCATTTGATGAGGACATCCAGGAGAAATAC
rJMSF003F02+ GATATTAGTTTGATGGATGAGGAGATAAATTCATTTGATGAGGACATCCAGGAGAAATAC
                      ____________________________________________________________
consensus GATATTAGTTTGATGGATGAGGAGATAAATTCATTTGATGAGGACATCCAGGAGAAATAC
 
. : . : . : . : . : . :
rJMSF042D15+ AAATGTTCTGTGAGAACAAGAAAGGTTGCAAGGTATCTGCATAGAAATTTCTTAGCTCAA
rJMSF003F02+ AAATGTTCTGTGAGAACAAGAAAGGTTGCAAGGTATCTGCATAGAAATTTCTTAGCTCAA
                      ____________________________________________________________
consensus AAATGTTCTGTGAGAACAAGAAAGGTTGCAAGGTATCTGCATAGAAATTTCTTAGCTCAA
 
. : . : . : . : . : . :
rJMSF042D15+ AATGGTGAAGCTGTGAACTTATCTCAGGCCCTGAAAGTAAAAACCAAAAAAGCAAGTGCA
rJMSF004P14+ CTGAAAGTNAAAACCAAAAAAGCAAGTGCA
rJMSF003F02+ AATGGTGAAGCTGTGAACTTATCTCAGGCCCTGAAAGTAAAAACCAAAAAAGCAAGTGCA
                      ____________________________________________________________
consensus AATGGTGAAGCTGTGAACTTATCTCAGGCCCTGAAAGTAAAAACCAAAAAAGCAAGTGCA
 
. : . : . : . : . : . :
rJMSF042D15+ AGGCTGTTCTATGAGATACTGGTCTTGAAAACAGGAGGTTGGATAGATGTGCAGCAGGAT
rJMSF004P14+ AGGCTGTTCTATGAGATACTGGTCTTGAAAACAGGAGGTGGGATAGATGTGCAGCAGGAT
rJMSF003F02+ AGGCTGTTCTATGAGATACTGGTCTTGAAAACAGGAGGTTGGATAGATGTGCAGCAGGAT
                      ____________________________________________________________
consensus AGGCTGTTCTATGAGATACTGGTCTTGAAAACAGGAGGTTGGATAGATGTGCAGCAGGAT
 
. : . : . : . : . : . :
rJMSF042D15+ AACGCGTATGGTGATATTTGTGTGCTCGAGTCTCCTAACCTGAAGCAGACTTTTGCAGCT
rJMSF004P14+ AACGCGTATGGTGATATTTGTGTGCTCGAGTCTCCTAACCTGAAGCAGACTTNTGCAGCT
rJMSF003F02+ AACGCGTATGGTGATATTTGTGTGCTCGAGTCTCCTAACCTGAAGCAGACTTTTGCAGCT
                      ____________________________________________________________
consensus AACGCGTATGGTGATATTTGTGTGCTCGAGTCTCCTAACCTGAAGCAGACTTTTGCAGCT
 
. : . : . : . : . : . :
rJMSF042D15+ GAGGTCGCAAACTAGGGCAATTGAATCGGTCTCATTAGGGAAGCAGATGTAGCATACGGC
rJMSF004P14+ GAGGTCGCAAACTNGGGCAATTGAATCGGTCTCATTAGGGAAGC
rJMSF003F02+ GAGGTCGCAAACTAGGGCAATTGAATCGGTCTCATTAGGGAAGCAGATGTAGCATATGGC
                      ____________________________________________________________
consensus GAGGTCGCAAACTAGGGCAATTGAATCGGTCTCATTAGGGAAGCAGATGTAGCATATGGC
 
. : . : . : . : . : . :
rJMSF042D15+ ACAGAAGTAGAANCAGGGTTACTTCCTTTAAACCATGAATACACATGTACATGTATATGT
rJMSF003F02+ ACAGAAGTAGAA-CAGGGTTACTTCCTTTAAACCATGAATACACATGTACATGTATATGT
                      ____________________________________________________________
consensus ACAGAAGTAGAANCAGGGTTACTTCCTTTAAACCATGAATACACATGTACATGTATATGT
 
. : . : . : . : . : . :
rJMSF042D15+ AGTAGAGAGCTCAG
rJMSF003F02+ AGTAGAGAGCTCAGATAATTTACTTTGGATAAGTAATTAGTGTTTTAATAAACAACCCAA
                      ____________________________________________________________
consensus AGTAGAGAGCTCAGATAATTTACTTTGGATAAGTAATTAGTGTTTTAATAAACAACCCAA