Contig 001270:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF003A14Sequence238022008729001270 (3)
JMSF014C16Sequence468005284 (3)ref|XP_006342757.1|2e-88PREDICTED: zinc finger CCCH domain-containing protein 58-like [Solanum tuberosu761001270 (3)
JMSF046L24Sequence679005284 (3)gb|EYU43920.1|2e-55hypothetical protein MIMGU_mgv1a0053871mg, partial [Erythranthe guttata]698001270 (3)

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF014C16+ G
                      ____________________________________________________________
consensus G
 
. : . : . : . : . : . :
rJMSF046L24+ CTCAGCAGT
rJMSF014C16+ GATCCAACACCCGGACATATTCGAAGACTGGTCCCCCCGCCCATTCTGGTACTCAGCAGT
rJMSF003A14+ CTCAGCAGT
                      ____________________________________________________________
consensus GATCCAACACCCGGACATATTCGAAGACTGGTCCCCCCGCCCATTCTGGTACTCAGCAGT
 
. : . : . : . : . : . :
rJMSF046L24+ CTGGACAACAGAGTTTTTCATCGAGTGGAGGCAGTAGTACGGGTCATGGACATGGAGGTG
rJMSF014C16+ CTGGACAACAGAGTTTTTCATCGAGTGGAGGCAGTAGTACGGGTCATGGACATGGAGGTG
rJMSF003A14+ CNGGACAACAGAGTTTTTCATCGAGTGGAGGCAGTAGTACGGGTCATGGACATGGAGGTG
                      ____________________________________________________________
consensus CTGGACAACAGAGTTTTTCATCGAGTGGAGGCAGTAGTACGGGTCATGGACATGGAGGTG
 
. : . : . : . : . : . :
rJMSF046L24+ AGGTTTCCACATCAAGCTAAAAAGATTAAGTGGTCATGTTTTTTCATCGCTCAACGACCA
rJMSF014C16+ AGGTTTCCACATCAAGCTAAAAAGATTAAGTGGTCATGTTTTTTCATCGCTCAACGACCA
rJMSF003A14+ AGGTTTCCACATCAAGCTAAAAAGATTAAGTGGTCATGTTTTTTCATCGCTCAACGACCA
                      ____________________________________________________________
consensus AGGTTTCCACATCAAGCTAAAAAGATTAAGTGGTCATGTTTTTTCATCGCTCAACGACCA
 
. : . : . : . : . : . :
rJMSF046L24+ TGACCATGGAGTAGCGTTATTATATTTTTGGTGCTAGTCGTCTACCTTTAGGAACCTTGT
rJMSF014C16+ TGACCATGGAGTAGCGTTATTATATTTTTGGTGCTAGTCGTCTACCTTTAGGAACCTTGT
rJMSF003A14+ TGACCATGGAGTAGCGTTATTATATTTTTGGTGCTAGTCGTCTACCTTTAGGAACCTTGT
                      ____________________________________________________________
consensus TGACCATGGAGTAGCGTTATTATATTTTTGGTGCTAGTCGTCTACCTTTAGGAACCTTGT
 
. : . : . : . : . : . :
rJMSF046L24+ CTTGGTCATCCACAGTTTTCATCCCCTCAGACGTAGCACACCCCGTAGCTCTGTTCATCA
rJMSF014C16+ CTTGGTCATCCACAGTTTTCATCCCCTCAGACGTAGCACACCCCGTAGCTCTGTTCATCA
rJMSF003A14+ CTTGGTCATCCACAGTTTTCATCCCCTCAGACGTAGCACACCCCGTAGCTCTGTTCATCA
                      ____________________________________________________________
consensus CTTGGTCATCCACAGTTTTCATCCCCTCAGACGTAGCACACCCCGTAGCTCTGTTCATCA
 
. : . : . : . : . : . :
rJMSF046L24+ TCTCTATGTTCATAGAACCTCATTACATGGCAACCCCGTTTTCCATTTTGAATAAGTAAA
rJMSF014C16+ TCTCTATGTTCATAGAACCTCATTACATGGCAACCCCGTTTTCCATTTTGAATAAGTAAA
rJMSF003A14+ TCTCTATGTTCATAGAACCTCATTACATGGCAACCCCGTTTTCCATTTTGAATAAGTAAA
                      ____________________________________________________________
consensus TCTCTATGTTCATAGAACCTCATTACATGGCAACCCCGTTTTCCATTTTGAATAAGTAAA
 
. : . : . : . : . : . :
rJMSF046L24+ ATATCCATTCTTCAAAGATCCCACAATCCTCGGTATAGACGTGTAGCTAGCTTCTGAATA
rJMSF014C16+ ATATCCATTCTTCAAAGATCCCACAATCCTCGGTATAGACGTGTAGCTAGCTTCTGAATA
rJMSF003A14+ ATATCCATTCTTCAAAGATCCCACAATCCTCGGTATAGACGTGTAGCTAGCTTCTGAATA
                      ____________________________________________________________
consensus ATATCCATTCTTCAAAGATCCCACAATCCTCGGTATAGACGTGTAGCTAGCTTCTGAATA
 
. : . : . : . : . : . :
rJMSF046L24+ ACAAGAAACAAACCCGCCTTCTGAACTAGGAGAATTTGCACCCATGCTCAATTTTTGGAG
rJMSF014C16+ ACAAGAAACAAACCCGCCTTCTGAACTAGGAGAATTTGCACCCATGCTCAATTTTTGGAG
rJMSF003A14+ ACAAGAAACAAACCCGCCTTCTGAACTAGGAGAATTTGCACCCATGCTCAATTTTTGGAG
                      ____________________________________________________________
consensus ACAAGAAACAAACCCGCCTTCTGAACTAGGAGAATTTGCACCCATGCTCAATTTTTGGAG
 
. : . : . : . : . : . :
rJMSF046L24+ CTTCTTGTTTATTTATGTTGTAGTCTTCTTTTTGGAACAAAAACCTTGTGGTCTCAACTC
rJMSF014C16+ CTTCTTGTTTATTTATGTTGTAGTCTTCTTTTTGGAACAAAAACCTTGTGGTCTCAACTC
rJMSF003A14+ CTTCTTGTTTATTTATGTTGTAGTCTTCTTTTTGGAACAAAAACCTTGTGGTCTCAACTC
                      ____________________________________________________________
consensus CTTCTTGTTTATTTATGTTGTAGTCTTCTTTTTGGAACAAAAACCTTGTGGTCTCAACTC
 
. : . : . : . : . : . :
rJMSF046L24+ AAGACAAGATTCAAGATTCAAGATTCATGCCTCCGGTTTAATCCATCTCGCCATTCAGAA
rJMSF014C16+ AAGACAAGATTCAAGATTCAAGATTCATGCCTCCGGTTTAATCCATCTCGCCATTCAGAA
rJMSF003A14+ AAGACAAGATTCAAGATTCAAGATTCATGCCTCCGGTTTAATCCATCTCGCCATTCAGAA
                      ____________________________________________________________
consensus AAGACAAGATTCAAGATTCAAGATTCATGCCTCCGGTTTAATCCATCTCGCCATTCAGAA
 
. : . : . : . : . : . :
rJMSF046L24+ CGGGCTTCCAATTTGACTGAGTGAGTTTCAAGTTCTCCTTGTTCTTCCACCCTTTTTGTC
rJMSF014C16+ CGGGCTTCCAATTTGACTGAGTGAGTTTCAAGTTCTCCTTGTTCTTCCACCCTTTTTGTC
rJMSF003A14+ CGGGCTTCCAATTTGACTGAGTGAGTTTCAAGTTCTCCTTGTTCTTCCACCCTTTTTGTC
                      ____________________________________________________________
consensus CGGGCTTCCAATTTGACTGAGTGAGTTTCAAGTTCTCCTTGTTCTTCCACCCTTTTTGTC
 
. : . : . : . : . : . :
rJMSF046L24+ TGGGGCTTTGTTGTGCAAAAAAACAAAAAGAATGATTCTGAGAACTACAAGCAAGGCAAT
rJMSF014C16+ TGGGGCTTTGTTGTGCAAAAAAACAAAAAGAATGATTCTGAGAACTACAAGCAAGGCAAT
rJMSF003A14+ TGGGGCTTTGTTGTGCAAAAAAACAAAAAGAATGATTCTGAGAACTACAAGCAAGGCAAT
                      ____________________________________________________________
consensus TGGGGCTTTGTTGTGCAAAAAAACAAAAAGAATGATTCTGAGAACTACAAGCAAGGCAAT
 
. : . : . : . : . : . :
rJMSF046L24+ GTAATGCTGCCTTCTTTAT
rJMSF014C16+ GTAATGCTGCCTTCTTTA-TGGACAAGATCTATACTTGTGT
rJMSF003A14+ GTAATGCTGCCTTCTTTATTGGACAAGATCTATACTTGTGTTGTGTTGTGATATATAATT
                      ____________________________________________________________
consensus GTAATGCTGCCTTCTTTATTGGACAAGATCTATACTTGTGTTGTGTTGTGATATATAATT