Contig 001268:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF030O19Sequence437000176 (2)ref|XP_009792953.1|5e-07PREDICTED: transcription factor bHLH49-like isoform X1 [Nicotiana sylvestris]657001268 (3)gb|EYU19938.1|2e-98hypothetical protein MIMGU_mgv1a012090mg [Erythranthe guttata]
JMSF002E18Sequence448001268 (3)ref|XP_011076794.1|3e-57PREDICTED: tropinone reductase homolog [Sesamum indicum]
JMSF002O20Sequence255017730654001268 (3)gb|KJB76107.1|9e-23hypothetical protein B456_012G072100 [Gossypium raimondii]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF002E18-                                             GGGCAACAATTATCCACTTCTCAGCT
                      ____________________________________________________________
consensus                                               GGGCAACAATTATCCACTTCTCAGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF002E18-           CTCACTGCGAGAGAATCAGTATTTCAATGGCGAAGACCGGAGAGGGCAGCAGATCAAGAT
                      ____________________________________________________________
consensus             CTCACTGCGAGAGAATCAGTATTTCAATGGCGAAGACCGGAGAGGGCAGCAGATCAAGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF002E18-           GGTCTCTTACAGGGATGACCGCTCTGGTCACCGGAGGAACTCGTGGAATCGGGCGTGCGA
                      ____________________________________________________________
consensus             GGTCTCTTACAGGGATGACCGCTCTGGTCACCGGAGGAACTCGTGGAATCGGGCGTGCGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF002E18-           TCGTGGAGGAACTAGCTGAACTGGGCGCCAGTGTGTACACATGTTCGAGAAAGGAAGAAG
                      ____________________________________________________________
consensus             TCGTGGAGGAACTAGCTGAACTGGGCGCCAGTGTGTACACATGTTCGAGAAAGGAAGAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF002E18-           AACTGAACCAACGCTTGCAAGAATGGGCTGCGAAAGGCCTCAAAGTCTCCGGTTCCGTCT
                      ____________________________________________________________
consensus             AACTGAACCAACGCTTGCAAGAATGGGCTGCGAAAGGCCTCAAAGTCTCCGGTTCCGTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF002E18-           GCGATGCTTCGTCTGCAGACCAGCGGGTGCTGCTCTCGCAGAAGGTTTCCTCCGCCTTTG
rJMFF030O19+                                                                CCTTTG
                      ____________________________________________________________
consensus             GCGATGCTTCGTCTGCAGACCAGCGGGTGCTGCTCTCGCAGAAGGTTTCCTCCGCCTTTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF002E18-           ATGGCAAGCTCAACATTCTTGTTAACAATGTTGGGACAAACATCAGGAAGCCTACAACTG
rJMFF030O19+          ATGGCAAGCTCAACATTCTTATCAACAATGTTGGGACAAACATCAAGAAGTCCACAGCTG
                      ____________________________________________________________
consensus             ATGGCAAGCTCAACATTCTTGTTAACAATGTTGGGACAAACATCAGGAAGTCTACAGCTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF002E18-           AGTATACTACTGAAGAATATTCTTATCTCATGGCTACCAACTTAGAGTCCTCTTACCAT 
rJMFF030O19+          AGTACACTATGGAAGAATACTCTTTAATCATGGCTACCAACTTAGAGTCTTCTTACCATT
                      ____________________________________________________________
consensus             AGTATACTATTGAAGAATATTCTTTTCTCATGGCTACCAACTTAGAGTCTTCTTACCATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF030O19+          TGTCTCAGCTTGCGTACCCTCTCTTGAAAGCATCTGGAGCTGGATGCATTGTCTTTGTCT
                      ____________________________________________________________
consensus             TGTCTCAGCTTGCGTACCCTCTCTTGAAAGCATCTGGAGCTGGATGCATTGTCTTTGTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF030O19+          CCTCTGTTGCTGGCTTGGTACACATATATACGGGATCAATCTATGGAGCAACCAAAGGGG
                      ____________________________________________________________
consensus             CCTCTGTTGCTGGCTTGGTACACATATATACGGGATCAATCTATGGAGCAACCAAAGGGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF030O19+          CTATGAATCAGCTTACCAAGAATTTGGCTTGCGAATGGGCAAAAGATAACATTAGGGTCA
                      ____________________________________________________________
consensus             CTATGAATCAGCTTACCAAGAATTTGGCTTGCGAATGGGCAAAAGATAACATTAGGGTCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF030O19+          ATTCCGTTGCCCCTTGGTATATCAGAACCTCGCTTGTGCAACATGTTCTTGAGAAGGAGG
rJMSF002O20+                                                      GTTCTTGAGAAGGAGG
                      ____________________________________________________________
consensus             ATTCCGTTGCCCCTTGGTATATCAGAACCTCGCTTGTGCAACATGTTCTTGAGAAGGAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF030O19+          AGTTTATGGATAGGGTGATATCCAGGACTCCTTTCAGGCGGATCGGGGAACCAGAAGAGG
rJMSF002O20+          AGTTTATGGATAGGGTGATATCCAGGACTCCTTTCAGGCGGATCGGGGAACCAGAAGAGG
                      ____________________________________________________________
consensus             AGTTTATGGATAGGGTGATATCCAGGACTCCTTTCAGGCGGATCGGGGAACCAGAAGAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF030O19+          TTTCATCAGTGGTTGCTTTCCTGTGTCTTCCTTCAGCTTCTTATGTGACTGGGCAGATTA
rJMSF002O20+          TTTCATCAGTGGTTGCTTTCCTGTGTCTTCCTTCAGCTTCTTATGTGACTGGGCAGATTA
                      ____________________________________________________________
consensus             TTTCATCAGTGGTTGCTTTCCTGTGTCTTCCTTCAGCTTCTTATGTGACTGGGCAGATTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF030O19+          TAGCTGTTGATGGTGGTTTTACAGTGAATGGGTTTGAATGAGAATCAAAAACTGGTTTCA
rJMSF002O20+          TAGCTGTTGATGGTGGTTTTACAGTGAATGGGTTTGAATGAGAATCAAAAACTGGTTTCA
                      ____________________________________________________________
consensus             TAGCTGTTGATGGTGGTTTTACAGTGAATGGGTTTGAATGAGAATCAAAAACTGGTTTCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF030O19+          ATTCCTTCCATGTTCATCATGTGTGTTTAGTTAGTGTCTTTGATCTGCCATTTGCAGTTC
rJMSF002O20+          ATTCCTTCCATGTTCATCATGTGTGTTTAGTTAGTGTCTTTGATCTGCCATTTGCAGTTC
                      ____________________________________________________________
consensus             ATTCCTTCCATGTTCATCATGTGTGTTTAGTTAGTGTCTTTGATCTGCCATTTGCAGTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF030O19+          TGTGGTTTCTTTGTGAACCAGTTCTAGCTGAATCAAGTTGACAGTAT             
rJMSF002O20+          TGTGGTTTCTTTGTGAACCAGTTCTAGCTGAATCAAGTTGACAGTATTAATAATGCATAT
                      ____________________________________________________________
consensus             TGTGGTTTCTTTGTGAACCAGTTCTAGCTGAATCAAGTTGACAGTATTAATAATGCATAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF002O20+          ATATGCACAATACTATCTTCTCATATATATGTTTCTCTTCATCCTTTATACTTAAACTAG
                      ____________________________________________________________
consensus             ATATGCACAATACTATCTTCTCATATATATGTTTCTCTTCATCCTTTATACTTAAACTAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF002O20+          GTGGTCCAAACAAGGACCATTTTTCCCCAGCTAGATTTCATGTCAAGAGGGATTGCAACC
                      ____________________________________________________________
consensus             GTGGTCCAAACAAGGACCATTTTTCCCCAGCTAGATTTCATGTCAAGAGGGATTGCAACC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF002O20+          AGGTTGGGCCCTTTGGGTTTTGGTCACAATAACCCACCATCCATTGGTATGTATATTGAT
                      ____________________________________________________________
consensus             AGGTTGGGCCCTTTGGGTTTTGGTCACAATAACCCACCATCCATTGGTATGTATATTGAT