Contig 001264:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF029F17+                                              TCATAGCCCGAGCCCATCAGCTAG
                      ____________________________________________________________
consensus                                                 TCATAGCCCGAGCCCATCAGCTAG
 
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rJMSF029F17+          TTATGGAAGGATATAACGGGAGCCATGAACAAAAAGTTGTCNCCATTTTTAGCGCACCAA
                      ____________________________________________________________
consensus             TTATGGAAGGATATAACGGGAGCCATGAACAAAAAGTTGTCNCCATTTTTAGCGCACCAA
 
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rJMSF029F17+          ACTACTGTTATCGTTGTGGGAACATGGCCTCGATTTTGGAAGTTGATGNCAACAAAGAAC
rJMSF002B12+                           GGGAACATGGCCTCGATTTTGGAAGTTGATGCCAACAAAGAAC
                      ____________________________________________________________
consensus             ACTACTGTTATCGTTGTGGGAACATGGCCTCGATTTTGGAAGTTGATGCCAACAAAGAAC
 
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rJMSF029F17+          ATACNTTTNTTCAGTTTGAGCCTGCTCCAAGAAGGGGNGAACCCGATGTTACCCGGNGAA
rJMSF002B12+          ATACATTTNTTCAGTTTGAGCCTGCTCCAAGAAGGGGNGAACCCGATGTTACCCGGNGAA
                      ____________________________________________________________
consensus             ATACATTTNTTCAGTTTGAGCCTGCTCCAAGAAGGGGNGAACCCGATGTTACCCGGNGAA
 
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rJMSF029F17+          CTCCCGACTACTTCCTGTAAAGCATNTGACAGTTGNTGATTTGTATTGTCTTACNCTATA
rJMSF007J03+                     TTCCTGTAAAGCNTTTGACAGTTGNNGATTTGTANTGTTTTACNCTATA
rJMSF002B12+          CTCCCGACTACTTCCTGTAAAGCATNTGACAGTTGCTGATTTGTATTGTCTTACNCTATA
                      ____________________________________________________________
consensus             CTCCCGACTACTTCCTGTAAAGCATTTGACAGTTGCTGATTTGTATTGTCTTACNCTATA
 
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rJMSF029F17+          GCTGGNGTTGTGCTACATATTTCCATATGTTGAAGACTCGGTCATCGTCTTGCGAANTAA
rJMSF007J03+          GCNGGGGTTGTGNTACATATTTCCATATGTTGAAGACTCGGTCATNGTCTTGNGAAATAA
rJMSF002B12+          GCNGGNGNTGTGCTACATATTTCCATATGTTGAAGACTCGGTCATCGTCTTGCGAANTAA
                      ____________________________________________________________
consensus             GCTGGGGTTGTGCTACATATTTCCATATGTTGAAGACTCGGTCATCGTCTTGCGAAATAA
 
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rJMSF029F17+          GCTTTTGGGGGCCAAAGCCCGAGAGGGCNAGAGGCATGTAAAATGGTACAACNTGATGTC
rJMSF007J03+          GCTTTTGGGGGCCAAAGCCCGNGAGGGCNAGAGGCNNGTAAAATGGTACAACNTGATGTC
rJMSF002B12+          GCTTTTGGGGGCCAAAGCCCGAGAGGGCNAGAGGCATGTAAAATGGTACAACNTGATGTC
                      ____________________________________________________________
consensus             GCTTTTGGGGGCCAAAGCCCGAGAGGGCNAGAGGCATGTAAAATGGTACAACNTGATGTC
 
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rJMSF029F17+          CCCCTCGATTCAAGTTACNTTNTAACCTATCTTTAGGNGTAATAGAAGNGGGGAAATCCN
rJMSF007J03+          CCCCNCGATTCAAGTTACNTTNTAACCTATNTTTAGGNGTAATAGAAGNGGGGAAATCCN
rJMSF002B12+          CCCCNCGATTCAAGTTACNTTNTAACCTATCTTTAGGNGTAATAGAAGNGGGGAAATCCA
                      ____________________________________________________________
consensus             CCCCTCGATTCAAGTTACNTTNTAACCTATCTTTAGGNGTAATAGAAGNGGGGAAATCCA
 
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rJMSF029F17+          GCAGCTGCAGACTGCAGNGCTACTGNGTATTGNGTCNTTTCANGGATCCTCTTTTTTTTC
rJMSF007J03+          NCNGNTGCNGNCTGCAGNGCTACTGNGTATTGNGTCNTTTTATGGNTCCTCTTTTTTTTC
rJMSF002B12+          GCAGCTGCAGACTGCAGNGCTACTGNGTATTGNGTCATTTCANGGATCCTCTTTTTTTTC
                      ____________________________________________________________
consensus             GCAGCTGCAGACTGCAGNGCTACTGNGTATTGNGTCATTTCATGGATCCTCTTTTTTTTC
 
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rJMSF029F17+          CC-TTTTTTTTTTTATTTTTGAAAAATATATTTTTCCATTTCTTGTTAATTATTAATTTT
rJMSF007J03+          CCNTTTTTTTTTTTATTTTTGAAAAATATATTTTTCCATTTCTTGTTAATTANTAATTTT
rJMSF002B12+          CC-TTTTTTTTTTTATTTTTGAAAAATATATTTTTCCATTTCTTGTTAATTATTAATTTT
                      ____________________________________________________________
consensus             CC-TTTTTTTTTTTATTTTTGAAAAATATATTTTTCCATTTCTTGTTAATTATTAATTTT
 
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rJMSF029F17+          CATTTCTTTGTTTCATTGCAAATGGTGGA-CATGTAGTGTATAAGTATGTATAAGGTTAA
rJMSF007J03+          CATTTCTNTGTTTCATTGCAAATGGTGGAGCATGTAGTGTATAAGTATGTATNAGGTTAA
rJMSF002B12+          CATTTCTTTGTTTCATTGCAAATGGTGGA-CATGTAGTGTATAAGTATGTATAAGGTTAA
                      ____________________________________________________________
consensus             CATTTCTTTGTTTCATTGCAAATGGTGGA-CATGTAGTGTATAAGTATGTATAAGGTTAA
 
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rJMSF029F17+          GAATTCAGTTTATGCTGTTT                                        
rJMSF007J03+          GAATNCAGTTTATGCTGTTTACTGNTACNGCTTNCCCTTGTTAATGTAACTGCAATA   
rJMSF002B12+          GAATTCAGTTTATGCTGTTT-CTGTTACTGCTTGCCCTTGTTAATGTAACTGCAATACTT
                      ____________________________________________________________
consensus             GAATTCAGTTTATGCTGTTTACTGTTACTGCTTGCCCTTGTTAATGTAACTGCAATACTT
 
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rJMSF002B12+          TGGCCTGTTGTTAATGGGGTTCAAGCCTTTCATTTCAAGCTAGTTCTTGGATGATTTCTG
                      ____________________________________________________________
consensus             TGGCCTGTTGTTAATGGGGTTCAAGCCTTTCATTTCAAGCTAGTTCTTGGATGATTTCTG