Contig 001260:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF051N06Sequence592002035 (3)ref|XP_011081763.1|178PREDICTED: uncharacterized protein LOC105164726 [Sesamum indicum] ref|XP_0110817546001260 (2)gb|ADE77861.1|2e-71unknown [Picea sitchensis]
JMSF001D02Sequence338002035 (3)764001260 (2)gb|KDO79864.1|1e-104hypothetical protein CISIN_1g005420mg [Citrus sinensis]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001D02+                          AGTGGGAGAAGAATTTTTACATTAGTGCCATAGCAGGAGCTAAC
                      ____________________________________________________________
consensus                             AGTGGGAGAAGAATTTTTACATTAGTGCCATAGCAGGAGCTAAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001D02+          AATGGGAGCTCTGTAGTAGTCATGTCTAAAGGTACCCAGTATTTGCAGCAGTCATATAAA
                      ____________________________________________________________
consensus             AATGGGAGCTCTGTAGTAGTCATGTCTAAAGGTACCCAGTATTTGCAGCAGTCATATAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF051N06+                                          CAAAAAATGGAGGGAGGGGTTTTATGTT
rJMSF001D02+          GTTAGCGAATCATTTCCATTTAAATGGATAAACAAAAAATGGAGGGAGGGGTTTTATGTT
                      ____________________________________________________________
consensus             GTTAGCGAATCATTTCCATTTAAATGGATAAACAAAAAATGGAGGGAGGGGTTTTATGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF051N06+          ACTGCCATGGCCACAGCAGGAAGTAGATGGGCAATTGTAATGTCTCGTGGGGCTGGGTTC
rJMSF001D02+          ACTGCCATGGCCACAGCAGGAAGTAGATGGGCAATTGTAATGTCTCGTGGGGCTGGGTTC
                      ____________________________________________________________
consensus             ACTGCCATGGCCACAGCAGGAAGTAGATGGGCAATTGTAATGTCTCGTGGGGCTGGGTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF051N06+          TCTGATCAGGTTGTAGAATTGGATTTCCTTTATCCCAGTGAAGGAATTCATAGGAGGTGG
rJMSF001D02+          TCTGATCAGGTTGTAGAATTGGATTTCCTTTATCCCAGTGAAGGAATTCATAGGAGGTGG
                      ____________________________________________________________
consensus             TCTGATCAGGTTGTAGAATTGGATTTCCTTTATCCCAGTGAAGGAATTCATAGGAGGTGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF051N06+          GATGCTGGTTATCGCATAACATCAACTGCAGCAACATGGGATCAAGCTGCTTTTGTTCTT
rJMSF001D02+          GATGCTGGTTATCGCATAACATCAACTGCAGCAACATGGGATCAAGCTGCTTTTGTTCTT
                      ____________________________________________________________
consensus             GATGCTGGTTATCGCATAACATCAACTGCAGCAACATGGGATCAAGCTGCTTTTGTTCTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF051N06+          AGTGTTCCAAGACGGAAACCTTCTGATGAAACACAAGAGACACTTCGAACATCTGCATTC
rJMSF001D02+          AGTGTTCCAAGACGGAAACCTTCTGATGAAACACAAGAGACACTTCGAACATCTGCATTC
                      ____________________________________________________________
consensus             AGTGTTCCAAGACGGAAACCTTCTGATGAAACACAAGAGACACTTCGAACATCTGCATTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF051N06+          CCTAGCACACATGTTAAGGAGAAATGGGCGAAGAATCTTTACATTGCATCTGTCTGTTAT
rJMSF001D02+          CCTAGCACACATGTTAAGGAGAAATGGGCGAAGAATCTTTACATTGCATCTGTCTGTTAT
                      ____________________________________________________________
consensus             CCTAGCACACATGTTAAGGAGAAATGGGCGAAGAATCTTTACATTGCATCTGTCTGTTAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF051N06+          GGGAGAACTGTTTCCTGAGACAACATAATTTTGCAACAAGTAATTTCATGGACAGACATA
rJMSF001D02+          GGGAGAACTGTTTCCTGAGACAACATAATTTTGCAACAAGTAATTTCATGGACAGACATA
                      ____________________________________________________________
consensus             GGGAGAACTGTTTCCTGAGACAACATAATTTTGCAACAAGTAATTTCATGGACAGACATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF051N06+          AGCTATAGTTGTACGGGCCATTCACATGTATTAGCTAATATATAATCCTCTATCAGAGAA
rJMSF001D02+          AGCTATAGTTGTACGGGCCATTCACATGTATTAGCTAATATATAATCCTCTATCAGAGAA
                      ____________________________________________________________
consensus             AGCTATAGTTGTACGGGCCATTCACATGTATTAGCTAATATATAATCCTCTATCAGAGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF051N06+          AATGCTCACATTTTAACCTGGTTGGGCTAACTCATCAATCTTTTGAGATGTACAACAATT
rJMSF001D02+          AATGCTCACATTTTAACCTGGTTGGGCTAACTCATCAATCTTTTGAGATGTACAACAATT
                      ____________________________________________________________
consensus             AATGCTCACATTTTAACCTGGTTGGGCTAACTCATCAATCTTTTGAGATGTACAACAATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF051N06+          TTCTTATTGACAAA                                              
rJMSF001D02+          TTCTTATTGACAAATGTGATTACTGCAGCTGTCTGGTTGTATCAAGCTCTTTATGCAGTA
                      ____________________________________________________________
consensus             TTCTTATTGACAAATGTGATTACTGCAGCTGTCTGGTTGTATCAAGCTCTTTATGCAGTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001D02+          AGTGATACTAGATGGGGGGTAATTTACTTATTCGTCAATGTCTGTATAGTTGAACAATAA
                      ____________________________________________________________
consensus             AGTGATACTAGATGGGGGGTAATTTACTTATTCGTCAATGTCTGTATAGTTGAACAATAA