Contig 001236:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF022K19Sequence462012878 (4)ref|XP_009757573.1|3e-27PREDICTED: protein NRT1/ PTR FAMILY 4.5-like isoform X2 [Nicotiana sylvestris]603001236 (3)ref|XP_006359595.1|1e-18PREDICTED: probable peptide/nitrate transporter At1g27040-like [Solanum tuberos
JMFF049M13Sequence493012829 (27)emb|CDP11417.1|8e-61unnamed protein product [Coffea canephora]467001236 (3)
JMFF050A17Sequence636012829 (27)emb|CDP11417.1|1e-76unnamed protein product [Coffea canephora]614001236 (3)ref|XP_006359595.1|2e-11PREDICTED: probable peptide/nitrate transporter At1g27040-like [Solanum tuberos

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF022K19+ CCAAAGCCTTGGCACCTAGCAAGAAAGGGTG
rJMFF050A17+ GGTG
                      ____________________________________________________________
consensus CCAAAGCCTTGGCACCTAGCAAGAAAGGGTG
 
. : . : . : . : . : . :
rJMFF022K19+ GNTAGAGGGCCAAGATTTGGACAAGAACAATTTGGCACTTTTNTANTGGTTTTTGGCCAT
rJMFF050A17+ GCTAGAGGGCCAAGATTTGGACAAGAACAATTTGGCACTTTTCTACTGGTTCTTGGCCAT
                      ____________________________________________________________
consensus GCTAGAGGGCCAAGATTTGGACAAGAACAATTTGGCACTTTTCTACTGGTTTTTGGCCAT
 
. : . : . : . : . : . :
rJMFF022K19+ TNTTAGCTGTTTCAACTTTGCAAACTATCTTTATTGGGCATTGTGGTACAAGTACAAACC
rJMFF050A17+ TCTTAGCTGTTTCAACTTTGCAAACTATCTTTATTGGGCATTGTGGTACAAGTACAAACC
                      ____________________________________________________________
consensus TCTTAGCTGTTTCAACTTTGCAAACTATCTTTATTGGGCATTGTGGTACAAGTACAAACC
 
. : . : . : . : . : . :
rJMFF022K19+ CCAAAACAACCCAAACCCCAACCCAAACCCCAAACCCAAACCATCATCAGATCCAGATAC
rJMFF050A17+ CCAAAACAACCCAAACCCCAACCCAAACCCCAAACCCAAACCATCATCAGATCCAGATAC
rJMFF049M13+ AACCCCAACCCAAACCCCAAACCCAAACCATCATCAGATCCAGATAC
                      ____________________________________________________________
consensus CCAAAACAACCCAAACCCCAACCCAAACCCCAAACCCAAACCATCATCAGATCCAGATAC
 
. : . : . : . : . : . :
rJMFF022K19+ TTTGCCCAAATCACTNTNTTTAAGTAGGGTGCCATTCCTCAAGGCCTNTGGAGATAATGA
rJMFF050A17+ TTTGCCCAAATCACTCTCTCTAAGTAGGGTGCCATTCCTCAAGGCCTCTGGAGATAATGA
rJMFF049M13+ TTTGCCCAAATCACTCTCTCTAAGTAGGGTGCCATTCCTCAAGGCCTCTGGAGATAATGA
                      ____________________________________________________________
consensus TTTGCCCAAATCACTCTCTCTAAGTAGGGTGCCATTCCTCAAGGCCTCTGGAGATAATGA
 
. : . : . : . : . : . :
rJMFF022K19+ TAATCCATNTCAAACTACGGTTAAATCGCTATNTACTCCCCAGTAATGGGAAAAGTTCAA
rJMFF050A17+ TAATCCATCTCAAACTACGGTTAAATCGCTATCTACTCCCCAGTAATGGGAAAAGTTCAA
rJMFF049M13+ TAATCCATCTCAAACTACGGTTAAATCGCTATCTACTCCCCAGTAATGGGAAAAGTTCAA
                      ____________________________________________________________
consensus TAATCCATCTCAAACTACGGTTAAATCGCTATCTACTCCCCAGTAATGGGAAAAGTTCAA
 
. : . : . : . : . : . :
rJMFF022K19+ GAAAGCCCAACCAGCTTCAATTCGTTGTGCCAATAAAAGCCCATGNTATTTCGTGGGCCT
rJMFF050A17+ GAAAGCCCAACCAGCTTCAATTCGTTGTGCCAATAAAAGCCCATGCTATTTCGTGGGCCT
rJMFF049M13+ GAAAGCCCAACCAGCTTCAATTCGTTGTGCCAATAAAAGCCCATGCTATTTCGTGGGCCT
                      ____________________________________________________________
consensus GAAAGCCCAACCAGCTTCAATTCGTTGTGCCAATAAAAGCCCATGCTATTTCGTGGGCCT
 
. : . : . : . : . : . :
rJMFF022K19+ AGTAATATATATATATATTAACATTTTTTTTTTGTTTTGCTTTTTGTTGAGTTCTTCTGG
rJMFF050A17+ AGTAATATATATATATATTAACATTTTTTTTTTGTTTTGCTTTTTGTTGAGTTCTTCTGG
rJMFF049M13+ AGTAATATATATATATATTAACATTTTTTTTTTGTTTTGCTTTTTGTTGAGTTCTTCTGG
                      ____________________________________________________________
consensus AGTAATATATATATATATTAACATTTTTTTTTTGTTTTGCTTTTTGTTGAGTTCTTCTGG
 
. : . : . : . : . : . :
rJMFF022K19+ GGTTTGTGTGTTTGATCTGAAATTTTTTGAGGGAAGGTTTAATTTGATTATGTGTACTTA
rJMFF050A17+ GGTTTGTGTGTTTGATCTGAAATTTTTTGAGGGAAGGTTTAATTTGATTATTTGTACTTA
rJMFF049M13+ GGTTTGTGTGTTTGATCTGAAATTTTTTGAGGGAAGGTTTAATTTGATTATTTGTACTTA
                      ____________________________________________________________
consensus GGTTTGTGTGTTTGATCTGAAATTTTTTGAGGGAAGGTTTAATTTGATTATTTGTACTTA
 
. : . : . : . : . : . :
rJMFF022K19+ GATGCATGCAATGTCTACTAGTATAAAATACGAAACAGATGTTTGTTTCATAAGTTGTAT
rJMFF050A17+ GATGCATGCAATGTCTACTAGTATAAAATACGAAACAGATGTTTGTTTCATAAGTTGTAT
rJMFF049M13+ GATGCATGCAATGTCTACTAGTATAAAATACGAAACAGATGTTTGTTTCATAAGTTGTAT
                      ____________________________________________________________
consensus GATGCATGCAATGTCTACTAGTATAAAATACGAAACAGATGTTTGTTTCATAAGTTGTAT
 
. : . : . : . : . : . :
rJMFF022K19+ GTATAAGGTCGTTACATGTAAAATAT
rJMFF050A17+ GTATAAGGTCGTTACATGTAAAATATTGAAGAATGTTTTCTAATGATACTAATTTCTTAC
rJMFF049M13+ GTATAAGGTCGTTACATGTAAAATATTGAAGAATGTTTTCTAATGATACTAATTTCTTAC
                      ____________________________________________________________
consensus GTATAAGGTCGTTACATGTAAAATATTGAAGAATGTTTTCTAATGATACTAATTTCTTAC