Contig 001229:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF030H12Sequence449013177 (4)ref|XP_004250900.1|1e-07PREDICTED: F-box protein At2g32560 isoform X2 [Solanum lycopersicum]722001229 (3)ref|XP_009590639.1|2e-80PREDICTED: F-box protein At2g32560 [Nicotiana tomentosiformis]
JMFF041L22Sequence650013177 (4)ref|XP_010313246.1|6e-30PREDICTED: F-box protein At2g32560 isoform X1 [Solanum lycopersicum]605001229 (3)ref|XP_009590639.1|2e-49PREDICTED: F-box protein At2g32560 [Nicotiana tomentosiformis]
JMFF048N15Sequence355013177 (4)283001229 (3)

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF030H12+ TCCGCCCCATGGAAGAAGGGCGGCTGCAATA
                      ____________________________________________________________
consensus TCCGCCCCATGGAAGAAGGGCGGCTGCAATA
 
. : . : . : . : . : . :
rJMFF030H12+ GAGAAAGGCGTGACTTGGGATAGATTAAGAGCTCCCCCTATCGACACCTCTCCGCATTAT
                      ____________________________________________________________
consensus GAGAAAGGCGTGACTTGGGATAGATTAAGAGCTCCCCCTATCGACACCTCTCCGCATTAT
 
. : . : . : . : . : . :
rJMFF030H12+ CTTCATATCTCTCTTTGCTTGAATGAATTGCGACCCGGAGATCACATCGAGATCCAATGG
rJMFF041L22+ CCAATGG
                      ____________________________________________________________
consensus CTTCATATCTCTCTTTGCTTGAATGAATTGCGACCCGGAGATCACATCGAGATCCAATGG
 
. : . : . : . : . : . :
rJMFF030H12+ AGGAGAAACAAAGAATTCCCTTATGGCTGGTGGTATGGCGTGGTTGGCCACTTGGAAACG
rJMFF041L22+ AGGAGAAACAAAGAATTCCCTTATGGCTGGTGGTATGGCGTGGTTGGCCACTTGGAAACG
                      ____________________________________________________________
consensus AGGAGAAACAAAGAATTCCCTTATGGCTGGTGGTATGGCGTGGTTGGCCACTTGGAAACG
 
. : . : . : . : . : . :
rJMFF030H12+ TGCGATAGGAACCAGATTTACTGCCGTTGTCATGAAAGTGACACTGTGGTGCTGGAGTTT
rJMFF041L22+ TGCGATAGGAACCAGATTTACTGCCGTTGTCATGAAAGTGACACTGTGGTGCTGGAGTTT
                      ____________________________________________________________
consensus TGCGATAGGAACCAGATTTACTGCCGTTGTCATGAAAGTGACACTGTGGTGCTGGAGTTT
 
. : . : . : . : . : . :
rJMFF030H12+ AACCAGTACAGTCCTGGTTCGCGGTGGAGGACAAAGATGATTAGCAGAGGAGAACATCGG
rJMFF041L22+ AACCAGTACAGTCCTGGTTCGCGGTGGAGGACAAAGATGATTAGCAGAGGAGAACATCGG
                      ____________________________________________________________
consensus AACCAGTACAGTCCTGGTTCGCGGTGGAGGACAAAGATGATTAGCAGAGGAGAACATCGG
 
. : . : . : . : . : . :
rJMFF030H12+ GAGGAAGGAAACGAGGGCGATGGGTTCTATGGAGGAATACGCAAACTTGACAGCAACGCC
rJMFF041L22+ GAGGAAGGAAACGAGGGCGATGGGTTCTATGGAGGAATACGCAAACTTGACAGCAACGCC
                      ____________________________________________________________
consensus GAGGAAGGAAACGAGGGCGATGGGTTCTATGGAGGAATACGCAAACTTGACAGCAACGCC
 
. : . : . : . : . : . :
rJMFF030H12+ GAAATTTCTATGTGGAGGCAGCACTGGCCTGCTGATATGTTGGAATAGATGATTTTGCAG
rJMFF041L22+ GAAATTTCTATGTGGAGGCAGCACTGGCCTGCTGATATGTTGGAATAGATGATTTTGCAG
                      ____________________________________________________________
consensus GAAATTTCTATGTGGAGGCAGCACTGGCCTGCTGATATGTTGGAATAGATGATTTTGCAG
 
. : . : . : . : . : . :
rJMFF030H12+ AAAGAATGAGTTTATGCAGTTTGGCAGATCAGAACAGTTTTGAATGGTCTAAAACAGAAG
rJMFF041L22+ AAAGAATGAGTTTATGCAGTTTGGCAGATCAGAACAGTTTTGAATGGTCTAAAACAGAAG
rJMFF048N15+ AGTTTGGCAGATCAGAACAGTTTTGAATGGTCTAAAACAGAAG
                      ____________________________________________________________
consensus AAAGAATGAGTTTATGCAGTTTGGCAGATCAGAACAGTTTTGAATGGTCTAAAACAGAAG
 
. : . : . : . : . : . :
rJMFF030H12+ GAAGTATGAAGAAGAAGAAGGCCAGAAGGGTGTTTTGGCAATGCCACAAGTTGCCTTTCT
rJMFF041L22+ GAAGTATGAAGAAGAAGAAGGCCAGAAGGGTGTTTTGGCAATGCCACAAGTTGCCTTTCT
rJMFF048N15+ GAAGTATGAAGAAGAAGAAGGCCAGAAGGGTGTTTTGGCAATGCCACAAGTTGCCTTTCT
                      ____________________________________________________________
consensus GAAGTATGAAGAAGAAGAAGGCCAGAAGGGTGTTTTGGCAATGCCACAAGTTGCCTTTCT
 
. : . : . : . : . : . :
rJMFF030H12+ CCACAGATCTTAGTGGTTATTGAACAATTTATTACTCATTAATTGTTTCC-ACTTTATAC
rJMFF041L22+ CCACAGATCTTAGTGGTTATTGAACAATTTATTACTCATTAATTGTTTCC-ACTTTATAC
rJMFF048N15+ CCACAGATCTTAGTGGTTATTGAACAATGTATTACTCATTATTTGTTTCCTACTTTATAC
                      ____________________________________________________________
consensus CCACAGATCTTAGTGGTTATTGAACAATTTATTACTCATTAATTGTTTCC-ACTTTATAC
 
. : . : . : . : . : . :
rJMFF030H12+ ATAATTTGTTCAGTAGATGTTCTTAGCTCCCTTCAGTTCCTCTTGTAGAGACTTTGAAGC
rJMFF041L22+ ATAATTTGTTCAGTAGATGTTCTTAGCTCCCTTCAGTTCCTCTTGTAGAGACTTTGAAGC
rJMFF048N15+ ATAATTTGTTCAGTAGATGTTCTTAGCTCCCTTCAGTTCCTCTTGTAGAGACTTTGAAGC
                      ____________________________________________________________
consensus ATAATTTGTTCAGTAGATGTTCTTAGCTCCCTTCAGTTCCTCTTGTAGAGACTTTGAAGC
 
. : . : . : . : . : . :
rJMFF030H12+ AATAGATTTTTGAACCTTTCCTCTTACC
rJMFF041L22+ AATAGATTTTTGAACCTTTCCTCTTACC
rJMFF048N15+ AATAGATTTTTGAACCTTTCCTCTTACCNAGTTTAGGTATTCTTTTAATAATCTTTACAC
                      ____________________________________________________________
consensus AATAGATTTTTGAACCTTTCCTCTTACCNAGTTTAGGTATTCTTTTAATAATCTTTACAC