Contig 001228:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF031G13Sequence397004580 (2)ref|XP_009595359.1|2e-31PREDICTED: ATP-dependent zinc metalloprotease FTSH 2, chloroplastic [Nicotiana 563001228 (2)emb|CBI22027.3|5e-85unnamed protein product [Vitis vinifera]
JMFF048L24Sequence395004666 (4)ref|XP_009595431.1|92.0PREDICTED: uncharacterized protein LOC104091733 [Nicotiana tomentosiformis]408001228 (2)emb|CBI22027.3|4e-32unnamed protein product [Vitis vinifera]

Alignment

This contig is upended


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rJMFF031G13+                                       TGCGAGAATTGTTGGAGGGCTCGGTGNAAGG
                      ____________________________________________________________
consensus                                          TGCGAGAATTGTTGGAGGGCTCGGTGNAAGG
 
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rJMFF031G13+          GCTGCAGAGGAAGTTATCTTTGGAGAGCCCGAGGTGACCACTGGTGCAGCTGGTGATTTG
                      ____________________________________________________________
consensus             GCTGCAGAGGAAGTTATCTTTGGAGAGCCCGAGGTGACCACTGGTGCAGCTGGTGATTTG
 
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rJMFF031G13+          CAACAGATCACCGGTATGGCGAAACAGATGGTTGTTACTTTTGGGATGTCTGAGATTGGG
                      ____________________________________________________________
consensus             CAACAGATCACCGGTATGGCGAAACAGATGGTTGTTACTTTTGGGATGTCTGAGATTGGG
 
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rJMFF031G13+          CCTTGGTCACTCATGGACTCGGGGGCTCAAAGCGCGGATGTTATCATGAGAATGATGGCC
                      ____________________________________________________________
consensus             CCTTGGTCACTCATGGACTCGGGGGCTCAAAGCGCGGATGTTATCATGAGAATGATGGCC
 
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rJMFF031G13+          CGCAACTCCATGTCAGAAAGGCTTGCAGAAGACATAGACGCGGCTGTGAAGAAGATCTCG
rJMFF048L24+                      TCAGAAAGGCTTGCAGAAGACATAGACGCGGCTGTGAAGAAGATCTCG
                      ____________________________________________________________
consensus             CGCAACTCCATGTCAGAAAGGCTTGCAGAAGACATAGACGCGGCTGTGAAGAAGATCTCG
 
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rJMFF031G13+          GACAGTGCATACGAGATTGCATTGACCCACATCCGGAACAACCGGGAAGCCATTGATAAG
rJMFF048L24+          GACAGTGCATACGAGATTGCATTGACCCACATCCGGAACAACCGGGAAGCCATTGATAAG
                      ____________________________________________________________
consensus             GACAGTGCATACGAGATTGCATTGACCCACATCCGGAACAACCGGGAAGCCATTGATAAG
 
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rJMFF031G13+          ATAGTGGAAGTCCTTCTCGAGAAGGAGACAATGAGTGGAGATGAATTCCGCGCAATTCTA
rJMFF048L24+          ATAGTGGAAGTCCTTCTCGAGAAGGAGACAATGAGTGGAGATGAATTCCGCGCAATTCTA
                      ____________________________________________________________
consensus             ATAGTGGAAGTCCTTCTCGAGAAGGAGACAATGAGTGGAGATGAATTCCGCGCAATTCTA
 
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rJMFF031G13+          TCAGAGTTTGTCGAAATCCCTGCTGAAAACCGCGTTCCTCCAGCAGTACCAGCCCCAGCA
rJMFF048L24+          TCAGAGTTTGTCGAAATCCCTGCTGAAAACCGCGTTCCTCCAGCAGTACCAGCCCCAGCA
                      ____________________________________________________________
consensus             TCAGAGTTTGTCGAAATCCCTGCTGAAAACCGCGTTCCTCCAGCAGTACCAGCCCCAGCA
 
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rJMFF031G13+          ACTGTATGATAGCATCATATGTATACTTGGATTTGTGATTTCAGGTGACTTTTATATGTC
rJMFF048L24+          ACTGTATGATAGCATCATATGTATACTTGGATTTGTGATTTCAGGTGACTTTTATATGTC
                      ____________________________________________________________
consensus             ACTGTATGATAGCATCATATGTATACTTGGATTTGTGATTTCAGGTGACTTTTATATGTC
 
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rJMFF031G13+          CCTAATCGCCCCTTTTTTTTGTATAAAAATCGCTACTTTTCTTGTAATCCAT        
rJMFF048L24+          CCTAATCGCCCCTTTTTTTTGTATAAAAATCGCTACTTTTCTTGTAATCCATGTAACTAA
                      ____________________________________________________________
consensus             CCTAATCGCCCCTTTTTTTTGTATAAAAATCGCTACTTTTCTTGTAATCCATGTAACTAA
 
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rJMFF048L24+          GATCATCAATTAGAAATAGAATGTAAGAATGCCAGAAAACTATATACATTTTCTTCACCC
                      ____________________________________________________________
consensus             GATCATCAATTAGAAATAGAATGTAAGAATGCCAGAAAACTATATACATTTTCTTCACCC