Contig 001210:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF045O11Sequence627005086 (4)emb|CDP07472.1|9e-39unnamed protein product [Coffea canephora]655001210 (3)gb|KDO84665.1|8e-69hypothetical protein CISIN_1g0093712mg, partial [Citrus sinensis]
JMSF022P24Sequence676005086 (4)ref|XP_006341977.1|1e-56PREDICTED: putative GTP-binding protein 6-like [Solanum tuberosum]721001210 (3)gb|KDO84665.1|3e-121hypothetical protein CISIN_1g0093712mg, partial [Citrus sinensis]
JMSF052K05Sequence678005086 (4)ref|XP_006341977.1|2e-62PREDICTED: putative GTP-binding protein 6-like [Solanum tuberosum]956001210 (3)ref|XP_011074988.1|5e-167PREDICTED: putative GTP-binding protein 6 [Sesamum indicum]

Alignment

This contig is upended


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rJMSF052K05+                                                     GAGCGTCAATTCTGGAG
                      ____________________________________________________________
consensus                                                        GAGCGTCAATTCTGGAG
 
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rJMSF052K05+          GGCAGGTCAAAGGTATGGGAGAGAANCAAATTGAAGTCGACAAGCGTATTCTACGTACTC
                      ____________________________________________________________
consensus             GGCAGGTCAAAGGTATGGGAGAGAANCAAATTGAAGTCGACAAGCGTATTCTACGTACTC
 
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rJMSF052K05+          AAATTGGTGTTCTCAAGAAAGAGCTAGAATCTGTTCGAAAGCATCGAAAACAGTACAGAA
                      ____________________________________________________________
consensus             AAATTGGTGTTCTCAAGAAAGAGCTAGAATCTGTTCGAAAGCATCGAAAACAGTACAGAA
 
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rJMSF052K05+          ACCGACGCACCTCCGTTCCTGTCCCTGTAGTGTCTTTGGTTGGATACACAAATGCTGGCA
                      ____________________________________________________________
consensus             ACCGACGCACCTCCGTTCCTGTCCCTGTAGTGTCTTTGGTTGGATACACAAATGCTGGCA
 
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rJMSF052K05+          AGAGTACACTACTGAATAGATTGACAGGGGCCGATGTTCTTGCTGAGGATAAATTATTTG
rJMSF022P24+                                              TTCTTGCTGAGGATAAATTATTTG
                      ____________________________________________________________
consensus             AGAGTACACTACTGAATAGATTGACAGGGGCCGATGTTCTTGCTGAGGATAAATTATTTG
 
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rJMSF052K05+          CCACACTTGATCCTACAACAAGAAGGGTGCAGATGAAGAATGGAAAAGAGTTCCTCCTGA
rJMSF022P24+          CCACACTTGATCCTACAACAAGAAGGGTGCAGATGAAGAATGGAAAAGAGTTCCTCCTGA
                      ____________________________________________________________
consensus             CCACACTTGATCCTACAACAAGAAGGGTGCAGATGAAGAATGGAAAAGAGTTCCTCCTGA
 
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rJMSF052K05+          CAGATACAGTAGGGTTCATTCAAAAGTTACCGACAACACTGGTTGCAGCCTTCAGGGCAA
rJMSF022P24+          CAGATACAGTAGGGTTCATTCAAAAGTTACCGACAACACTGGTTGCAGCCTTCAGGGTAA
                      ____________________________________________________________
consensus             CAGATACAGTAGGGTTCATTCAAAAGTTACCGACAACACTGGTTGCAGCCTTCAGGGTAA
 
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rJMSF052K05+          CATTGGAAGAAATCTCTGAATCATCGCTTATGGTGCATTTGGTGGACATCAGTCATCCTC
rJMSF022P24+          CATTGGAAGAAATCTCTGAATCATCGCTTATGGTGCATTTGGTGGACATCAGTCATCCTC
                      ____________________________________________________________
consensus             CATTGGAAGAAATCTCTGAATCATCGCTTATGGTGCATTTGGTGGACATCAGTCATCCTC
 
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rJMSF052K05+          TGGCAGAGCAACATATTGAAGCTGTGGATAAAGTTCTTTCAGAACTTGATGCATCTTCAA
rJMSF022P24+          TGGCAGAGCAACATATTGAAGCTGTGGATAAAGTTCTTTCAGAACTTGATGCATCTTCAA
rJMFF045O11+            GCAGAGCAACATATTGAAGCTGTGGATAAAGTTCTTTCAGAACNTGATGCATCTTCAA
                      ____________________________________________________________
consensus             TGGCAGAGCAACATATTGAAGCTGTGGATAAAGTTCTTTCAGAACTTGATGCATCTTCAA
 
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rJMSF052K05+          TCCCAAAGTTGATGGTATGGAATAAGGTTGATAAAGCTGCAGATCCTGAAAAGATCAAGT
rJMSF022P24+          TCCCAAAGTTGATGGTATGGAATAAGGTTGATAAAGCTGCAGATCCTGAAAAGATCAAGT
rJMFF045O11+          TCCCAAAGTTGATGGTATGGAATAAGGTTGATAAAGCTGCAGATCCTGAAAAGATCAAGT
                      ____________________________________________________________
consensus             TCCCAAAGTTGATGGTATGGAATAAGGTTGATAAAGCTGCAGATCCTGAAAAGATCAAGT
 
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rJMSF052K05+          TGGAAGCTAAGCAAAAAGATGTCATTTGTATATCCGCTTTGACTGGTGAAGGGTTAAACG
rJMSF022P24+          TGGAAGCTAAGCAAAAAGATGTCATTTGTATATCCGCTTTGACTGGTGAAGGGTTAAACG
rJMFF045O11+          TGGAAGCTAAGCAAAAAGATGTCATTNGTATATCCGCTTTGACTGGTGAAGGGTTAAACG
                      ____________________________________________________________
consensus             TGGAAGCTAAGCAAAAAGATGTCATTTGTATATCCGCTTTGACTGGTGAAGGGTTAAACG
 
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rJMSF052K05+          ACTTTTGTGATGCTGTTCAGAATAAGCTGAAGCAGGATACTATGGTTTGGGTAGAAGCGT
rJMSF022P24+          ACTTTTGTGATGCTGTTCAGAATAAGCTGA---AGGATACTATGGTTTGGGTAGAAGCGT
rJMFF045O11+          ACTTTTGTGATGCTGTTCAGAATAAGCTGA---AGGATACTATGGTTTGGGTAGAAGCGT
                      ____________________________________________________________
consensus             ACTTTTGTGATGCTGTTCAGAATAAGCTGA---AGGATACTATGGTTTGGGTAGAAGCGT
 
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rJMSF052K05+          TGATACCCTTTGATAAGGGGGGACTCCTCAGCACCATACACCAAGTTGGAATGGTTGACA
rJMSF022P24+          TGATACCCTTTGATAAGGGGGAACTCCTCAGCACCATACACCAAGTTGGAATGGTTGACA
rJMFF045O11+          TGATACCCTTTGATAAGGGGGAACTCCTCAGCACCATACACCAAGTTGGAATGGTTGACA
                      ____________________________________________________________
consensus             TGATACCCTTTGATAAGGGGGAACTCCTCAGCACCATACACCAAGTTGGAATGGTTGACA
 
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rJMSF052K05+          GAACGGAATACACGGCAAATGGAACCTTGGTGAGAGCATACGTGCCCCTCCGTTTTGCCA
rJMSF022P24+          GAACGGAATACACGGCAAATGGAACCTTGGTGAGAGCATACGTGCCCCTCCGTTTTGCCA
rJMFF045O11+          GAACGGAATACACGGCAAATGGAACCTTGGTGAGAGCATACGTGCCCCTCCGTTTTGCCA
                      ____________________________________________________________
consensus             GAACGGAATACACGGCAAATGGAACCTTGGTGAGAGCATACGTGCCCCTCCGTTTTGCCA
 
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rJMSF052K05+          GGATTCTCACCCCGATGAGGCAAATGTGTGTGTCGTAACATCTTCCTCCCATCAGAATCC
rJMSF022P24+          GGATTCTCACCCCGATGAGGCAAATGTGTGTGTCGTAACATCTTCCTCCCATCAGAATCC
rJMFF045O11+          GGATTCTCACCCCGATGAGGCAAATGTGTGTGTCGTAACATCTTCCTCCCATCAGAATCC
                      ____________________________________________________________
consensus             GGATTCTCACCCCGATGAGGCAAATGTGTGTGTCGTAACATCTTCCTCCCATCAGAATCC
 
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rJMSF052K05+          AGATTTCGTGACAATGCCTCATTATCAAGATTAGTTCAAAGCTCGTGTACGGTGTACATA
rJMSF022P24+          AGATTTCGTGACAATGCCTCATTATCAAGATTAGTTCAAAGCTCGTGTACGGTGTACATA
rJMFF045O11+          AGATTTCGTGACAATGCCTCATTATCAAGATTAGTTCAAAGCTCGTGTACGGTGTACATA
                      ____________________________________________________________
consensus             AGATTTCGTGACAATGCCTCATTATCAAGATTAGTTCAAAGCTCGTGTACGGTGTACATA
 
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rJMSF052K05+          ATTGGATTACTGTTGCGTGTGTAAATATATTGACACATT                     
rJMSF022P24+          ATTGGATTACTGTTGCGTGTGTAAATATATTGACACATT                     
rJMFF045O11+          ATTGGATTACTGTTGCGTGTGTAAATATATTGACACATTTGTATTTAGGTATATGTATTC
                      ____________________________________________________________
consensus             ATTGGATTACTGTTGCGTGTGTAAATATATTGACACATTTGTATTTAGGTATATGTATTC
 
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rJMFF045O11+          TCTCTCAGATCCTTTCTAAGGTGATATTCTCTGTATGTTGAAGAGTGCAGACATCAATAT
                      ____________________________________________________________
consensus             TCTCTCAGATCCTTTCTAAGGTGATATTCTCTGTATGTTGAAGAGTGCAGACATCAATAT
 
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rJMFF045O11+          AAGCTTTCCTCTATGATTCAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG
                      ____________________________________________________________
consensus             AAGCTTTCCTCTATGATTCAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG