clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF011B04 | Sequence | 538 | 004650 (4) | ref|XP_009782512.1| | 6e-54 | PREDICTED: uncharacterized protein At1g51745 [Nicotiana sylvestris] ref|XP_00978 | 757 | 001208 (4) | ref|XP_009614718.1| | 6e-41 | PREDICTED: uncharacterized protein At1g51745-like isoform X2 [Nicotiana tomento |
JMFF028M06 | Sequence | 264 | 004650 (4) | ref|XP_009782512.1| | 2e-16 | PREDICTED: uncharacterized protein At1g51745 [Nicotiana sylvestris] ref|XP_00978 | 715 | 001208 (4) | ref|XP_009614718.1| | 2e-32 | PREDICTED: uncharacterized protein At1g51745-like isoform X2 [Nicotiana tomento |
JMFF040L12 | Sequence | 586 | 004650 (4) | ref|XP_009782512.1| | 2e-54 | PREDICTED: uncharacterized protein At1g51745 [Nicotiana sylvestris] ref|XP_00978 | 788 | 001208 (4) | ref|XP_009614718.1| | 4e-42 | PREDICTED: uncharacterized protein At1g51745-like isoform X2 [Nicotiana tomento |
JMFF045L23 | Sequence | 623 | 004650 (4) | ref|XP_009782512.1| | 8e-58 | PREDICTED: uncharacterized protein At1g51745 [Nicotiana sylvestris] ref|XP_00978 | 421 | 001208 (4) |
This contig is upended
. : . : . : . : . : . :
rJMFF040L12+ TACCGCACACGCCATATCCCNTTACA
____________________________________________________________
consensus TACCGCACACGCCATATCCCNTTACA
. : . : . : . : . : . :
rJMFF011B04+ ATTAATGAGCAAATTAAACGGCCAGCCTATCACGGGTCACCGGCTTGCTGTTGAAG
rJMFF028M06+ GGCTTGCTGTTGAAG
rJMFF040L12+ TTTCATTAATGAGCAAATTAAACGGCCAGCNTATCACGGGTCACCGGCTTGCTGTTGAAG
____________________________________________________________
consensus TTTCATTAATGAGCAAATTAAACGGCCAGCCTATCACGGGTCACCGGCTTGCTGTTGAAG
. : . : . : . : . : . :
rJMFF011B04+ TTTTAGACGATGGCTTCTGTGATCAACTGCTCGTGAGCGCTAGCAACTGTCACGACTTGG
rJMFF028M06+ TTTTAGACGATGGCTTCTGTGATCAACTGCTCGTGAGCGCTAGCAACTGTCACGACTTGG
rJMFF040L12+ TTTTAGACGATGGCTTCTGTGATCAACTGCTCGTGAGCGCTAGCAACTGTCACGACTTGG
____________________________________________________________
consensus TTTTAGACGATGGCTTCTGTGATCAACTGCTCGTGAGCGCTAGCAACTGTCACGACTTGG
. : . : . : . : . : . :
rJMFF011B04+ ATGATGATTCTGCTCCAAAAGGTGTCGATATGGTCAACAAAACGAAACTAAGTTTTGGTG
rJMFF028M06+ ATGATGATTCTGCTCCAAAAGGTGTCGATATGGTCAACAAAACGAAACTAAGTTTTGGTG
rJMFF040L12+ ATGATGATTCTGCTCCAAAAGGTGTCGATATGGTCAACAAAACGAAACTAAGTTTTGGTG
____________________________________________________________
consensus ATGATGATTCTGCTCCAAAAGGTGTCGATATGGTCAACAAAACGAAACTAAGTTTTGGTG
. : . : . : . : . : . :
rJMFF011B04+ GTAGGCTTCAACCTCGCGCCTCATCAACTAAGTCATCAAAATCAAAGAAAGAAAGCATGC
rJMFF028M06+ GTAGGCTTCAACCTCGCGCCTCATCAACTAAGTCATCAAAATCAAAGAAAGAAAGCATGC
rJMFF040L12+ GTAGGCTTCAACCTCGCGCCTCATCAACTAAGTCATCAAAATCAAAGAAAGAAAGCATGC
____________________________________________________________
consensus GTAGGCTTCAACCTCGCGCCTCATCAACTAAGTCATCAAAATCAAAGAAAGAAAGCATGC
. : . : . : . : . : . :
rJMFF011B04+ TCTCGAAGAAGGTTCGTAGGTTGTCTTCATTGACTGGTCCTCGCAAGCAAAATCGAGAGA
rJMFF028M06+ TCTCGAAGAAGGTTCGTAGGTTGTCTTCATTGACTGGTCCTCGCAAGCAAAATCGAGAGA
rJMFF040L12+ TCTCGAAGAAGGTTCGTAGGTTGTCTTCATTGACTGGTCCTCGCAAGCAAAATCGAGAGA
____________________________________________________________
consensus TCTCGAAGAAGGTTCGTAGGTTGTCTTCATTGACTGGTCCTCGCAAGCAAAATCGAGAGA
. : . : . : . : . : . :
rJMFF011B04+ AGAACCCCACAGTACAACAGCTTAGAGGCCCCACAATAGCATGCGTTCCTTTGAAAGTGG
rJMFF028M06+ AGAACCCCACAGTACAACAGCTTAGAGGCCCCACAATAGCATGCGTTCCTTTGAAAGTGG
rJMFF040L12+ AGAACCCCACAGTACAACAGCTTAGAGGCCCCACAATAGCATGCGTTCCTTTGAAAGTGG
rJMFF045L23+ G
____________________________________________________________
consensus AGAACCCCACAGTACAACAGCTTAGAGGCCCCACAATAGCATGCGTTCCTTTGAAAGTGG
. : . : . : . : . : . :
rJMFF011B04+ TGTTCAGTAGAATTAAAGCTGCGCTTAACAGTTCAATACGACCAGCCCACCGCCTTATCG
rJMFF028M06+ TGTTCAGTAGAATTAAAGCTGCGCTTAACAGTTCAATACGACCAGCCCACCGCCTTATCG
rJMFF040L12+ TGTTCAGTAGAATTAAAGCTGCGCTTAACAGTTCAATACGACCAGCCCACCGCCTTATCG
rJMFF045L23+ TGTTCAGTAGAATTAAAGCTGCGCTTAACAGTTCAATACGACCAGCCCACCGCCTTATCG
____________________________________________________________
consensus TGTTCAGTAGAATTAAAGCTGCGCTTAACAGTTCAATACGACCAGCCCACCGCCTTATCG
. : . : . : . : . : . :
rJMFF011B04+ CACCCAGCATTGGTTGAATCTTCTTTCTTGGATTGAGCTTAGGTTTTGTGTGAAAGTTTG
rJMFF028M06+ CACCCAGCATTGGTTGAATCTTCTTTCTTGGATTGAGCTTAGGTTTTGTGTGAAAGTTTG
rJMFF040L12+ CACCCAGCATTGGTTGAATCTTCTTTCTTGGATTGAGCTTAGGTTTTGTGTGAAAGTTTG
rJMFF045L23+ CACCCAGCATTGGTTGAATCTTCTTTCTTGGATTGAGCTTAGGTTTTGTGTGAAAGTTTG
____________________________________________________________
consensus CACCCAGCATTGGTTGAATCTTCTTTCTTGGATTGAGCTTAGGTTTTGTGTGAAAGTTTG
. : . : . : . : . : . :
rJMFF011B04+ GTTTGTAGGTGGCTTAGTATAGTATACCTGTTTCAAATGAAACATGGAGCTCTGTCCAGG
rJMFF028M06+ GTTTGTAGGTGGCTTAGTATAGTATACCTGTTTCAAATGAAACATGGAGCTCTGTCCAGG
rJMFF040L12+ GTTTGTAGGTGGCTTAGTATAGTATACCTGTTTCAAATGAAACATGGAGCTCTGTCCAGG
rJMFF045L23+ GTTTGTAGGTGGCTTAGTATAGTATACCTGTTTCAAATGAAACATGGAGCTCTGTCCAGG
____________________________________________________________
consensus GTTTGTAGGTGGCTTAGTATAGTATACCTGTTTCAAATGAAACATGGAGCTCTGTCCAGG
. : . : . : . : . : . :
rJMFF011B04+ TTGGGCTGCTTTTGCGGTGTACATAAAATTTAAGGTTAGGTACTTAGCTGAAGGTGTAAA
rJMFF028M06+ TTGGGCTGCTTTTGCGGTGTACATAAAATTTAAGGTTAGGTACTTAGCTGAAGGTGTAAA
rJMFF040L12+ TTGGGCTGCTTTTGCGGTGTACATAAAATTTAAGGTTAGGTACTTAGCTGAAGGTGTAAA
rJMFF045L23+ TTGGGCTGCTTTTGCGGTGTACATAAAATTTAAGGTTAGGTACTTAGCTGAAGGTGTAAA
____________________________________________________________
consensus TTGGGCTGCTTTTGCGGTGTACATAAAATTTAAGGTTAGGTACTTAGCTGAAGGTGTAAA
. : . : . : . : . : . :
rJMFF011B04+ GAACAGTGGATTTGATGTTGGGTTTTGGTGATGTTTTAACAACTCTGATGTTCTTTAGTT
rJMFF028M06+ GAACAGTGGATTTGATGTTGGGTTTTGGTGATGTTTTAACAACTCTGATGTTCTTTAGTT
rJMFF040L12+ GAACAGTGGATTTGATGTTGGGTTTTGGTGATGTTTTAACAACTCTGATGTTCTTTAGTT
rJMFF045L23+ GAACAGTGGATTTGATGTTGGGTTTTGGTGATGTTTTAACAACTCTGATGTTCTTTAGTT
____________________________________________________________
consensus GAACAGTGGATTTGATGTTGGGTTTTGGTGATGTTTTAACAACTCTGATGTTCTTTAGTT
. : . : . : . : . : . :
rJMFF011B04+ TTTGGAACTGAGTTTATATTTGCTTTCCCCTTCTCCATTATGTGGCCCTTTAGAACTATT
rJMFF028M06+ TTTGGAACTGAGTTTATATTTGCTTTCCCCTTCTCCATTATGTGGCCCTTTAGAACTATT
rJMFF040L12+ TTTGGAACTGAGTTTATATTTGCTTTCCCCTTCTCCATTATGTGGCCCTTTAGAACTATT
rJMFF045L23+ TTTGGAACTGAGTTTATATTTGCTTTCCCCTTCTCCATTATGTGGCCCTTTAGAACTATT
____________________________________________________________
consensus TTTGGAACTGAGTTTATATTTGCTTTCCCCTTCTCCATTATGTGGCCCTTTAGAACTATT
. : . : . : . : . : . :
rJMFF011B04+ GCAAATGGTTTTGAGTTCTATTCTTATCATAGTCCTCACC
rJMFF028M06+ GCAAATGGTTTTGAGTTCTATTCTTATCATAGTCCTCACC
rJMFF040L12+ GCAAATGGTTTTGAGTTCTATTCTTATCATAGTCCTCACC
rJMFF045L23+ GCAAATGGTTTTGAGTTCTATTCTTATCATAGTCCTCACCACTGGTGAAATTTGAATTTT
____________________________________________________________
consensus GCAAATGGTTTTGAGTTCTATTCTTATCATAGTCCTCACCACTGGTGAAATTTGAATTTT