Contig 001206:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF003O01Sequence522003078 (6)ref|XP_009769444.1|3e-11PREDICTED: DEAD-box ATP-dependent RNA helicase 20 [Nicotiana sylvestris]785001206 (5)ref|XP_011071940.1|2e-63PREDICTED: DEAD-box ATP-dependent RNA helicase 20 isoform X2 [Sesamum indicum]
JMFF006L18Sequence561003078 (6)ref|XP_009769444.1|5e-11PREDICTED: DEAD-box ATP-dependent RNA helicase 20 [Nicotiana sylvestris]781001206 (5)ref|XP_004236255.1|3e-72PREDICTED: DEAD-box ATP-dependent RNA helicase 20 [Solanum lycopersicum]
JMFF045I24Sequence618003078 (6)gb|KJB40104.1|9e-13hypothetical protein B456_007G047000 [Gossypium raimondii] gb|KJB40105.1| hypoth653001206 (5)emb|CBI14966.3|9e-19unnamed protein product [Vitis vinifera]
JMSF015M06Sequence485003078 (6)ref|XP_009769444.1|2e-10PREDICTED: DEAD-box ATP-dependent RNA helicase 20 [Nicotiana sylvestris]798001206 (5)ref|XP_004236255.1|1e-66PREDICTED: DEAD-box ATP-dependent RNA helicase 20 [Solanum lycopersicum]
JMSF019C11Sequence544003078 (6)emb|CDP12744.1|3e-28unnamed protein product [Coffea canephora]792001206 (5)emb|CBI14966.3|3e-17unnamed protein product [Vitis vinifera]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF019C11+                                                                     T
                      ____________________________________________________________
consensus                                                                        T
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF019C11+          CGTGACAGCCCGGTTGACTCACAAGATTATTTAATGATTCATTATTTCATTTTTGGAGTT
                      ____________________________________________________________
consensus             CGTGACAGCCCGGTTGACTCACAAGATTATTTAATGATTCATTATTTCATTTTTGGAGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF019C11+          GTGGTGGTGGAGCTGCTCCTTATCCCTGCAAAGTTAAGGTGGGCACAATATATTAGGACT
                      ____________________________________________________________
consensus             GTGGTGGTGGAGCTGCTCCTTATCCCTGCAAAGTTAAGGTGGGCACAATATATTAGGACT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF019C11+          GTATTATCTTACACACAATCACTAAGATCTTATTAGTGCAGGGATAAGGTAGCAAGTTGC
                      ____________________________________________________________
consensus             GTATTATCTTACACACAATCACTAAGATCTTATTAGTGCAGGGATAAGGTAGCAAGTTGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF019C11+          GAGTGTATGTGTGATCATTTTATTTTTTTTCAGTGTGTTCTTGATCTGATGATTGTTATT
                      ____________________________________________________________
consensus             GAGTGTATGTGTGATCATTTTATTTTTTTTCAGTGTGTTCTTGATCTGATGATTGTTATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF006L18+                  GATGTGAAGGACATAAAATGTGTAATCAATTATGATTTTCCTACTTGTCTTG
rJMSF019C11+          CTTTTGTAGATGTGAAGGACATAAAATGTGTAATCAATTATGATTTTCCTACTTGTCTTG
rJMFF003O01+                  GATGTGAAGGACATAAAATGTGTAATCAATTATGATTTTCCTACTTGTCTTG
rJMSF015M06+                  GATGTGAAGGACATAAAATGTGTAATCAATTATGATTTTCCTACTTGTCTTG
rJMFF045I24+                 TGATGTGAAGGACATAAAATGTGTAATCAATTATGATTTTCCTACTNGTCTTG
                      ____________________________________________________________
consensus             CTTTTGTTGATGTGAAGGACATAAAATGTGTAATCAATTATGATTTTCCTACTTGTCTTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF006L18+          AGGATTATGTTCATAGGATAGGAAGAACTGGTCGGGCGGGTGCCAAGGGAACTGCATTTA
rJMSF019C11+          AGGATTATGTTCATAGGATAGGAAGAACTGGTCGGGCGGGTGCCAAGGGAACTGCATTTA
rJMFF003O01+          AGGATTATGTTCATAGGATAGGAAGAACTGGTCGGGCGGGTGCCAAGGGAACTGCATTTA
rJMSF015M06+          AGGATTATGTTCATAGGATAGGAAGAACTGGTCGGGCGGGTGCCAAGGGAACTGCATTTA
rJMFF045I24+          AGGATTATGTTCATAGGATAGGAAGAACTGGTCGGGCGGGTGCCAAGGGAACTGCATTTA
                      ____________________________________________________________
consensus             AGGATTATGTTCATAGGATAGGAAGAACTGGTCGGGCGGGTGCCAAGGGAACTGCATTTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF006L18+          CATTTTTTACCCATGGAAATGCAAAGTTTGCCAGAGAACTTGTTAAGATCCTTCAGCAAG
rJMSF019C11+          CATTTTTTACCCATGGAAATGCAAAGTTTGCCAGAGAACTTGTTAAGATCCTTCAGCAAG
rJMFF003O01+          CATTTTTTACCCATGGAAATGCAAAGTTTGCCAGAGAACTTGTTAAGATCCTTCAGCAAG
rJMSF015M06+          CATTTTTTACCCATGGAAATGCAAAGTTTGCCAGAGAACTTGTTAAGATCCTTCAGCAAG
rJMFF045I24+          CATTTTTTACCCATGGAAATGCAAAGTTTGCCAGAGAACTTGTTAAGATCCTTCAGCAAG
                      ____________________________________________________________
consensus             CATTTTTTACCCATGGAAATGCAAAGTTTGCCAGAGAACTTGTTAAGATCCTTCAGCAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF006L18+          CAGGTCAAATTGTTCCCCCTCAGTTGTCAGCATTGGCATGCCCCGGTGGTTTCAGCTCTG
rJMSF019C11+          CAGGTCAAATTGTTCCCCCTCAGTTGTCAGCATTGGCATGCCCCGGTGGTTTCAGCTCTG
rJMFF003O01+          CAGGTCAAATTGTTCCCCCTCAGTTGTCAGCATTGGCATGCCCCGGTGGTTTCAGCTCTG
rJMSF015M06+          CAGGTCAAATTGTTCCCCCTCAGTTGTCAGCATTGGCATGCCCCGGTGGTTTCAGCTCTG
rJMFF045I24+          CAGGTCAAATTGTTCCCCCTCAGTTGTCAGCATTGGCATGCCCCGGTGGTTTCAGCTCTG
                      ____________________________________________________________
consensus             CAGGTCAAATTGTTCCCCCTCAGTTGTCAGCATTGGCATGCCCCGGTGGTTTCAGCTCTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF006L18+          GAGGAAACAACTTCCGCTCTAGAGGGCGGGGAGGCTTTGGAAACCGTGGGTCGATTTCGG
rJMSF019C11+          GAGGAAACAACTTCCGCTCTAGAGGGCGGGGAGGCTTTGGAAACCGTGGGTCGATTTCGG
rJMFF003O01+          GAGGAAACAACTTCCGCTCTAGAGGGCGGGGAGGCTTTGGAAACCGTGGGTCGATTTCGG
rJMSF015M06+          GAGGAAACAACTTCCGCTCTAGAGGGCGGGGAGGCTTTGGAAACCGTGGGTCGATTTCGG
rJMFF045I24+          GAGGAAACAACTTCCGCTCTAGAGGGCGGGGAGGCTTTGGAAACCGTGGGTCGATTTCGG
                      ____________________________________________________________
consensus             GAGGAAACAACTTCCGCTCTAGAGGGCGGGGAGGCTTTGGAAACCGTGGGTCGATTTCGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF006L18+          GATCTAATACAGTTCCACTTGGAGCGAAAAGACATTGGTAGTATTATACTGATCCTCCAT
rJMSF019C11+          GATCTAATACAGTTCCACTTGGAGCGAAAAGACATTGGTAGTATTATACTGATCCTCCAT
rJMFF003O01+          GATCTAATACAGTTCCACTTGGAGCGAAAAGACATTGGTAGTATTATACTGATCCTCCAT
rJMSF015M06+          GATCTAATACAGTTCCACTTGGAGCGAAAAGACATTGGTAGTATTATACTGATCCTCCGT
rJMFF045I24+          GATCTAATACAGTTCCACTTGGAGCGAAAAGACATTGGTAGTATTATACTGATCCTCCAT
                      ____________________________________________________________
consensus             GATCTAATACAGTTCCACTTGGAGCGAAAAGACATTGGTAGTATTATACTGATCCTCCAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF006L18+          AGATGTGTTGTTCACACTAGAAATAGCACATTCATGATAGTTCAGAGATCCCCTAGTCTT
rJMSF019C11+          AGATGTGTTGTTCACACTAGAAATAGCACATTCATGATAGTTCAGAGATCCCCTAGTCTT
rJMFF003O01+          AGATGTGTTGTTCACACTAGAAATAGCACATTCATGATAGTTCAGAGATCCCCTAGTCTT
rJMSF015M06+          AGATGTGTTGTTCACACTAGAAATAGCACATTCATGATAGTTCAGAGATCACCTAGTCTT
rJMFF045I24+          AGATGTGTTGTTCACACTAGAAATAGCACATTCATGATAGTTCAGAGATCCCCTAGTCTT
                      ____________________________________________________________
consensus             AGATGTGTTGTTCACACTAGAAATAGCACATTCATGATAGTTCAGAGATCCCCTAGTCTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF006L18+          GTGCAGTACTAGAAATAGCTTACCCAGAAACTGAATTACTCCTCCTGAAAGCTTATATAT
rJMSF019C11+          GTGCAGTACTAGAAATAGCTTACCCAGAAACTGAATTACTCCTCCTGAAAGCTTATATAT
rJMFF003O01+          GTGCAGTACTAGAAATAGCTTACCCAGAAACTGAATTACTCCTCCTGAAAGCTTATATAT
rJMSF015M06+          GTGCAGTACTAGAAATAGCTTACCCAGAAACTGAATTACTCCTCCTGAAAGCTTATATAT
rJMFF045I24+          GTGCAGTACTAGAAATAGCTTACCCAGAAACTGAATTACTCCTCCTGAAAGCTTATATAT
                      ____________________________________________________________
consensus             GTGCAGTACTAGAAATAGCTTACCCAGAAACTGAATTACTCCTCCTGAAAGCTTATATAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF006L18+          TTGTTTTCTAAACTGTATTTCTAGTAGAATGCAATCCAATTGCTGTTTATTAACCT    
rJMSF019C11+          TTGTTTTCTAAACTGTATTTCTAGTAGAATGCAATCCAATTGCTGTTTATTAACCT    
rJMFF003O01+          TTGTTTTCTAAACTGTATTTCTAGTAGAATGCAATCCAATTGCTGTTTATTAACCTTGAA
rJMSF015M06+          TTGTTTTCTAAACTGTATTTCTAGTAGAATGCAATCCAATTGCTGTTTATTAACCTTGAA
rJMFF045I24+          TTGTTTTCTAAACTGTATTTCTAGTAGAATGCAATCCAATTGCTGTTTATTAACCTTGAA
                      ____________________________________________________________
consensus             TTGTTTTCTAAACTGTATTTCTAGTAGAATGCAATCCAATTGCTGTTTATTAACCTTGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF003O01+          AAAGGTAGAGTTTGGTTTGCTGAAAGGATTTAGCGAACTAATGAATGA            
rJMSF015M06+          AAAGGTAGAGTTTGGTTTGCTGAAAGGATTTAGCGAAC                      
rJMFF045I24+          AAAGGTAGAGTTTGGTTTGCTGAAAGGATTTAGCGAACTAATGAATGATATTTCATCTAT
                      ____________________________________________________________
consensus             AAAGGTAGAGTTTGGTTTGCTGAAAGGATTTAGCGAACTAATGAATGATATTTCATCTAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF045I24+          TCTAATTTACATTGTTCTAAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG
                      ____________________________________________________________
consensus             TCTAATTTACATTGTTCTAAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG