clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF040L20 | Sequence | 522 | 010334 (3) | ref|XP_010096873.1| | 4e-42 | Aspartic proteinase [Morus notabilis] gb|EXB66327.1| Aspartic proteinase [Morus | 717 | 001201 (3) | ref|XP_011100273.1| | 2e-85 | PREDICTED: cyprosin-like [Sesamum indicum] |
JMFF044P08 | Sequence | 645 | 010334 (3) | ref|XP_009764301.1| | 1e-61 | PREDICTED: aspartic proteinase A1-like [Nicotiana sylvestris] | 627 | 001201 (3) | ref|XP_011100273.1| | 9e-68 | PREDICTED: cyprosin-like [Sesamum indicum] |
JMFF050E15 | Sequence | 621 | 010334 (3) | ref|XP_010096873.1| | 2e-48 | Aspartic proteinase [Morus notabilis] gb|EXB66327.1| Aspartic proteinase [Morus | 632 | 001201 (3) | ref|XP_011100273.1| | 3e-69 | PREDICTED: cyprosin-like [Sesamum indicum] |
This contig is upended
. : . : . : . : . : . :
rJMFF040L20+ CTATGCTAGATATGCTGTTAACTCAGGTGGCACCCAAACTGATATGCTC
____________________________________________________________
consensus CTATGCTAGATATGCTGTTAACTCAGGTGGCACCCAAACTGATATGCTC
. : . : . : . : . : . :
rJMFF040L20+ TGAAATTGGTTTGTGTGCACCTGATAGTACTTGGGATGCGAGTATGATGATTGAGAGTGT
____________________________________________________________
consensus TGAAATTGGTTTGTGTGCACCTGATAGTACTTGGGATGCGAGTATGATGATTGAGAGTGT
. : . : . : . : . : . :
rJMFF040L20+ GGTGGATAAAAACAATGAAGCTTCTAGCGGTTTGCATGGTGATATGTGTCATCTCTGTCG
rJMFF050E15+ AGCGGTTTGCATGGTGATATGTGTCATCTCTGTCG
rJMFF044P08+ GCATGGTGATATGTGTCATCTCTGTCG
____________________________________________________________
consensus GGTGGATAAAAACAATGAAGCTTCTAGCGGTTTGCATGGTGATATGTGTCATCTCTGTCG
. : . : . : . : . : . :
rJMFF040L20+ AATGGCAGTTGTATGGATGGAAAGCAAACTCAAACAAAACCAGACTGAAGAGAAAATATT
rJMFF050E15+ AATGGCAGTNGTATGGATGGAAAGCAAACTCAAACAAAACCAGACTGAAGAGAAAATATT
rJMFF044P08+ AATGGCAGTTGTATGGATGGAAAGCAAACTCAAACAAAACCAGACTGAAGAGAAAATATT
____________________________________________________________
consensus AATGGCAGTTGTATGGATGGAAAGCAAACTCAAACAAAACCAGACTGAAGAGAAAATATT
. : . : . : . : . : . :
rJMFF040L20+ GGACTACATTGATGAGCTCTGTGATCGCCTACCCACTCCAATGGGAGAATCTTCTATCGA
rJMFF050E15+ GGACTACATTGATGAGCTCTGTGATCGCCTACCCACTCCAATGGGAGAATCTTCTATCGA
rJMFF044P08+ GGACTACATTGATGAGCTCTGTGATCGCCTACCCACTCCAATGGGAGAATCTTCTATCGA
____________________________________________________________
consensus GGACTACATTGATGAGCTCTGTGATCGCCTACCCACTCCAATGGGAGAATCTTCTATCGA
. : . : . : . : . : . :
rJMFF040L20+ CTGCAGCAACCTTGCTTCCATGCCTAGTATTTCATTTACCATCGCTGGTAAATCGTTTGA
rJMFF050E15+ CTGCAGCAACCTTGCTTCCATGCCTAGTATTTCATTTACCATCGCTGGTAAATCGTTTGA
rJMFF044P08+ CTGCAGCAACCTTGCTTCCATGCCTAGTATTTCATTTACCATCGCTGGTAAATCGTTTGA
____________________________________________________________
consensus CTGCAGCAACCTTGCTTCCATGCCTAGTATTTCATTTACCATCGCTGGTAAATCGTTTGA
. : . : . : . : . : . :
rJMFF040L20+ ACTAACACCGGATGAGTATGTCCTTCAAGTTGGCAAGGGAGCTGTAACACAATGCATTAG
rJMFF050E15+ ACTAACACCGGATGAGTATGTCCTTCAAGTTGGCAAGGGAGCTGTAACACAATGCATTAG
rJMFF044P08+ ACTAACACCGGATGAGTATGTCCTTCAAGTTGGCAAGGGAGCTGTAACACAATGCATTAG
____________________________________________________________
consensus ACTAACACCGGATGAGTATGTCCTTCAAGTTGGCAAGGGAGCTGTAACACAATGCATTAG
. : . : . : . : . : . :
rJMFF040L20+ CGGGTTTATAGCGCTAGATGTGCCACCACCCCGTGGACCCCTGTGGATCTTGGGAGACGT
rJMFF050E15+ CGGGTTTATAGCGCTAGATGTGCCACCACCCCGTGGACCCCTGTGGATCTTGGGAGACGT
rJMFF044P08+ CGGGTTTATAGCGCTAGATGTGCCACCACCCCGTGGACCCCTGTGGATCTTGGGAGACGT
____________________________________________________________
consensus CGGGTTTATAGCGCTAGATGTGCCACCACCCCGTGGACCCCTGTGGATCTTGGGAGACGT
. : . : . : . : . : . :
rJMFF040L20+ TTTCATGGGTAGGTACCACACTGTGTTTGACTATGGAAATATGAGGGTTGGATTTGCTGA
rJMFF050E15+ TTTCATGGGTAGGTACCACACTGTGTTTGACTATGGAAATATGAGGGTTGGATTTGCTGA
rJMFF044P08+ TTTCATGGGTAGGTACCACACTGTGTTTGACTATGGAAATATGAGGGTTGGATTTGCTGA
____________________________________________________________
consensus TTTCATGGGTAGGTACCACACTGTGTTTGACTATGGAAATATGAGGGTTGGATTTGCTGA
. : . : . : . : . : . :
rJMFF040L20+ AGCAG
rJMFF050E15+ AGCAGTGTAAATCAATGTCTGCAAATTTACTGCCATTGCGAAACCTTTGATGCTTGATTT
rJMFF044P08+ AGCAGTGTAAATCAATGTCTGCAAATTTACTGCCATTGCGAAACCTTTGATGCTTGATTT
____________________________________________________________
consensus AGCAGTGTAAATCAATGTCTGCAAATTTACTGCCATTGCGAAACCTTTGATGCTTGATTT
. : . : . : . : . : . :
rJMFF050E15+ CTATGGTACCATGCCGATGGTGAAACTCTGCTGTGTCTTTCAGTGACTTGAAATGGACTA
rJMFF044P08+ CTATGGTACCATGCCGATGGTGAAACTCTGCTGTGTCTTTCAGTGACTTGAAATGGACTA
____________________________________________________________
consensus CTATGGTACCATGCCGATGGTGAAACTCTGCTGTGTCTTTCAGTGACTTGAAATGGACTA
. : . : . : . : . : . :
rJMFF050E15+ CTGTGCATAATAAAAACTGATACTCCATACTATGTAAGATATAAACAATGTCTTATTTAT
rJMFF044P08+ CTGTGCATAATAAAAACTGATACTCCATACTATGTAAGATATAAACAATGTCTTATTTAT
____________________________________________________________
consensus CTGTGCATAATAAAAACTGATACTCCATACTATGTAAGATATAAACAATGTCTTATTTAT
. : . : . : . : . : . :
rJMFF050E15+ ATTTAAATTAAAGGGCTAAAGTTTTTATAGTAAAAAAAAAAAAAAA
rJMFF044P08+ ATTTAAATTAAAGGGCTAAAGTTTTTATAGTGTAAAAAAAAAAAAAAAACTCACCAGGGT
____________________________________________________________
consensus ATTTAAATTAAAGGGCTAAAGTTTTTATAGTGTAAAAAAAAAAAAAAAACTCACCAGGGT