Contig 001200:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF008P13Sequence606002466 (4)emb|CDP11719.1|7e-40unnamed protein product [Coffea canephora]683001200 (4)ref|XP_011074767.1|3e-88PREDICTED: DEAD-box ATP-dependent RNA helicase 5 [Sesamum indicum]
JMFF012H10Sequence579002466 (4)emb|CDP11719.1|1e-33unnamed protein product [Coffea canephora]733001200 (4)ref|XP_011074767.1|3e-87PREDICTED: DEAD-box ATP-dependent RNA helicase 5 [Sesamum indicum]
JMFF044N19Sequence638002466 (4)gb|EYU29070.1|9e-45hypothetical protein MIMGU_mgv1a006477mg [Erythranthe guttata]412001200 (4)
JMSF050D20Sequence655002466 (4)gb|EYU29070.1|3e-46hypothetical protein MIMGU_mgv1a006477mg [Erythranthe guttata]798001200 (4)ref|XP_011074767.1|1e-119PREDICTED: DEAD-box ATP-dependent RNA helicase 5 [Sesamum indicum]

Alignment

This contig is upended


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rJMSF050D20+                                   TTTAGCTGCCAACCATGATGTCATGCCAATAGTGG
                      ____________________________________________________________
consensus                                      TTTAGCTGCCAACCATGATGTCATGCCAATAGTGG
 
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rJMSF050D20+          AGGTCTGGAGGACAGAGCACGAGATGAACGCCTACAAAATTTGTTAGAAAAGTACCACAA
                      ____________________________________________________________
consensus             AGGTCTGGAGGACAGAGCACGAGATGAACGCCTACAAAATTTGTTAGAAAAGTACCACAA
 
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rJMSF050D20+          GTCTAGAAGGAATAGGGTACTGGTTTTTGTCTTATACAAGAAGGAAGCATCTCGAGTTGA
rJMFF012H10+                        GGGTACTGGTTTTNGTCTTATACAAGAAGGAAGCATCTCGAGTTGA
                      ____________________________________________________________
consensus             GTCTAGAAGGAATAGGGTACTGGTTTTTGTCTTATACAAGAAGGAAGCATCTCGAGTTGA
 
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rJMSF050D20+          AAATATGCTACAGAGG-AGGGGTTGGAAAGTAGTTTCAATAAGCGGTGACAAGGCACAAA
rJMFF012H10+          AAATATGCTACAGAGGAGGGGGTTGGAAAGTAGTTTCAATAAGCGGTGACAAGGCACAAA
rJMFF008P13+                         GGAGGGGTTGGAAAGTAGTTTCAATAAGCGGTGACAAGGCACAAA
                      ____________________________________________________________
consensus             AAATATGCTACAGAGGGAGGGGTTGGAAAGTAGTTTCAATAAGCGGTGACAAGGCACAAA
 
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rJMSF050D20+          ATGCACGCACACAGGCATTATCACTGTTTAAGGAGGGAAGTTGTCCCCTATTGATAGCCA
rJMFF012H10+          ATGCACGCACACAGGCATTATCACTGTTTAAGGAGGGAAGTTGTCCCCTATTGATAGCCA
rJMFF008P13+          ATGCACGCACACAGGCATTATCACTGTTTAAGGAGGGAAGTTGTCCCCTATTGATAGCCA
                      ____________________________________________________________
consensus             ATGCACGCACACAGGCATTATCACTGTTTAAGGAGGGAAGTTGTCCCCTATTGATAGCCA
 
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rJMSF050D20+          CAGATGTGGCTGCCCGAGGACTGGATATTCCTGATGTTGAAGTTGTAATTAATTATAGTT
rJMFF012H10+          CAGATGTGGCTGCACGAGGACTGGATATTCCTGATGTTGAAGTTGTAATTAATTATAGTT
rJMFF008P13+          CAGATGTGGCTGCACGAGGACTGGATATTCCTGATGTTGAAGTTGTAATTAATTATAGTT
                      ____________________________________________________________
consensus             CAGATGTGGCTGCACGAGGACTGGATATTCCTGATGTTGAAGTTGTAATTAATTATAGTT
 
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rJMSF050D20+          TTCCTCTCACAACGGAAGACTATGTTCACAGAATTGGAAGGACCGGACGGGCTGGTAAGA
rJMFF012H10+          TTCCTCTCACAACGGAAGACTATGTTCACAGAATTGGAAGGACCGGACGGGCTGGTAAGA
rJMFF008P13+          TTCCTCTCACAACGGAAGACTATGTTCACAGAATTGGAAGGACCGGACGGGCTGGTAAGA
                      ____________________________________________________________
consensus             TTCCTCTCACAACGGAAGACTATGTTCACAGAATTGGAAGGACCGGACGGGCTGGTAAGA
 
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rJMSF050D20+          AAGGAGTAGCTCATACATTCTTCACGAAAGAAAACAAGGGACTCGCAGGGGAATTGGTAA
rJMFF012H10+          AAGGAGTAGCTCATACATTCTTCACGAAAGAAAACAAGGGACTCGCAGGGGAATTGGTAA
rJMFF008P13+          AAGGAGTAGCTCATACATTCTTCACGAAAGAAAACAAGGGACTCGCAGGGGAATTGGTAA
                      ____________________________________________________________
consensus             AAGGAGTAGCTCATACATTCTTCACGAAAGAAAACAAGGGACTCGCAGGGGAATTGGTAA
 
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rJMSF050D20+          ATGTTCTTAAAGAAGCAGGACAAATCGTACCAGCTGACCTCCTGAAATTCGGTACTCATG
rJMFF012H10+          ATGTTCTTAAAGAAGCAGGACAAATCGTACCAGCTGACCTCCTGAAATTCGGTACTCATG
rJMFF008P13+          ATGTTCTTAAAGAAGCAGGACAAATCGTACCAGCTGACCTCCTGAAATTCGGTACTCATG
                      ____________________________________________________________
consensus             ATGTTCTTAAAGAAGCAGGACAAATCGTACCAGCTGACCTCCTGAAATTCGGTACTCATG
 
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rJMSF050D20+          TAAAGAAAAAGGAGTCGAAGCTTTATGGCGCCCATTTCAGAGAAATCACTCCTAATGCTG
rJMFF012H10+          TAAAGAAAAAGGAGTCGAAGCTTTATGGCGCCCATTTCAGAGAAATCACTCCTAATGCTG
rJMFF008P13+          TAAAGAAAAAGGAGTCGAAGCTTTATGGCGCCCATTTCAGAGAAATCACTCCTAATGCTG
rJMFF044N19+                  AAGGAGTGGAAGCTTTATGGCGCCCATTTCAGAGAAATCACTCCTAATGTTG
                      ____________________________________________________________
consensus             TAAAGAAAAAGGAGTCGAAGCTTTATGGCGCCCATTTCAGAGAAATCACTCCTAATGCTG
 
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rJMSF050D20+          CAAAAGCAACAAAGATAAAATTTGATAATTCTGACGATGAAGATTGATTTTGGGATGCAA
rJMFF012H10+          CAAAAGCAACAAAGATAAAATTTGATAATTCTGACGATGAAGATTGATTTTGGGATGCAA
rJMFF008P13+          CAAAAGCAACAAAGATAAAATTTGATAATTCTGACGATGAAGATTGATTTTGGGATGCAA
rJMFF044N19+          CAAAAGCAACAAAGATAAAATTTGATAATTTTGACGATGAAGATTGATTTTGGGATGCAA
                      ____________________________________________________________
consensus             CAAAAGCAACAAAGATAAAATTTGATAATTCTGACGATGAAGATTGATTTTGGGATGCAA
 
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rJMSF050D20+          AGCGTCTTATTTAAACGACGATTTTCTAGTACCAGTAGCAGCCAGCAGGGCAGTAAGAGG
rJMFF012H10+          AGCGTCTTATTTAAACGACGATTTTCTAGTACCAGTAGCAGCCAGCAGGGCAGTAAGAGG
rJMFF008P13+          AGCGTCTTATTTAAACGACGATTTTCTAGTACCAGTAGCAGCCAGCAGGGCAGTAAGAGG
rJMFF044N19+          AGCGTTTTATTTAAACGACGATTTTTTAGTTCCAGTAGCAGCCAGCAGGGCAGTAAGAGG
                      ____________________________________________________________
consensus             AGCGTCTTATTTAAACGACGATTTTCTAGTACCAGTAGCAGCCAGCAGGGCAGTAAGAGG
 
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rJMSF050D20+          AAATTCAATTATAATGCTTGTACCATTTACTTATTCTTTCATCTGGATATCTTGTTTGCA
rJMFF012H10+          AAATTCAATTATAATGCTTGTACCATTTACTTATTCTTTCATCTGGATATCTTGTTTGCA
rJMFF008P13+          AAATTCAATTATAATGCTTGTACCATTTACTTATTCTTTCATCTGGATATCTTGTTTGCT
rJMFF044N19+          AAATTCAATTATAATGCTTGTACCATTTACTTATTCTTTCATCTGGATATTTTGTTTGCA
                      ____________________________________________________________
consensus             AAATTCAATTATAATGCTTGTACCATTTACTTATTCTTTCATCTGGATATCTTGTTTGCA
 
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rJMSF050D20+          CACAAGATATGCCGACATGTTTTTGATGATATGGAAAGTAC                   
rJMFF012H10+          CACAAGATATGCCGACATGTTTTTGATGATATGGAAAGTACACTTGTTCATGTAGTTCCA
rJMFF008P13+          CACAAGATATGCCGACATGTTTTTGATGATATGGAAAGTACACTTGTTCATGTAGTTCCA
rJMFF044N19+          CCCAAGATATGCCGACATGTTTTTGATGATATGGAAAGTACCCTTGTTCATGTAGTTCCA
                      ____________________________________________________________
consensus             CACAAGATATGCCGACATGTTTTTGATGATATGGAAAGTACACTTGTTCATGTAGTTCCA
 
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rJMFF012H10+          ATCCTATATTTATT                                              
rJMFF008P13+          ATCCTATATTTATT                                              
rJMFF044N19+          ATCCTATATTTATTTGCAAACTTTAATTATAGAAAATGTTTTTTTGTTTTTATACAGGGG
                      ____________________________________________________________
consensus             ATCCTATATTTATTTGCAAACTTTAATTATAGAAAATGTTTTTTTGTTTTTATACAGGGG
 
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rJMFF044N19+          GCATTTCCCATTTGATGTGTTTGTTTGGTTAGTCTTGGAATGCAATTATTTTATAAACTC
                      ____________________________________________________________
consensus             GCATTTCCCATTTGATGTGTTTGTTTGGTTAGTCTTGGAATGCAATTATTTTATAAACTC