Contig 001183:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF041M01Sequence639010835 (3)ref|XP_004234663.1|4e-76PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like [Solanum lycope535001183 (3)ref|XP_009783411.1|3e-30PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like [Nicotiana sylv
JMSF001N19Sequence297010835 (3)764001183 (3)ref|XP_009783411.1|6e-81PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like [Nicotiana sylv
JMSF039F20Sequence714010835 (3)ref|XP_004234663.1|6e-92PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like [Solanum lycope876001183 (3)ref|XP_009783411.1|4e-101PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like [Nicotiana sylv

Alignment

This contig is upended


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rJMSF039F20+ TTTGCNAGATACAATCAATTA
                      ____________________________________________________________
consensus TTTGCNAGATACAATCAATTA
 
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rJMSF039F20+ TGCCCAGATGTTGGAGGAGGNCTGGTTTGTGCTNTTCTAGCCGTGCATGGACGAACAAGG
                      ____________________________________________________________
consensus TGCCCAGATGTTGGAGGAGGNCTGGTTTGTGCTNTTCTAGCCGTGCATGGACGAACAAGG
 
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rJMSF039F20+ GATGAAAAAGATGGGAAGAAATTTCGAGCAAACTGGGATATCATCAAGGCTGTTAAAAAT
rJMSF001N19+ AAAAT
                      ____________________________________________________________
consensus GATGAAAAAGATGGGAAGAAATTTCGAGCAAACTGGGATATCATCAAGGCTGTTAAAAAT
 
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rJMSF039F20+ TCAGTGAGAATCCCTGTACTTGCTAATGGAAATATTCGACACATGGATGACGTACAAAGT
rJMSF001N19+ TCAGTGAGAATCCCTGTACTTGCTAATGGAAATATTCGACACATGGATGACGTACAAAGT
                      ____________________________________________________________
consensus TCAGTGAGAATCCCTGTACTTGCTAATGGAAATATTCGACACATGGATGACGTACAAAGT
 
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rJMSF039F20+ TGTTTAGAAGAGACCGGTGTAGAGGGTGTTCTTTCAGCCGAGTCTCTTCTCGAGAACCCT
rJMSF001N19+ TGTTTAGAAGAGACCGGTGTAGAGGGTGTTCTTTCAGCCGAGTCTCTTCTCGAGAACCCT
                      ____________________________________________________________
consensus TGTTTAGAAGAGACCGGTGTAGAGGGTGTTCTTTCAGCCGAGTCTCTTCTCGAGAACCCT
 
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rJMSF039F20+ GCCCTCTTTGCTGGATATATGACAACCGAGTGGACGAATGGAAGTATAGGAATTAAGGAA
rJMSF001N19+ GCCCTCTTTGCTGGATATATGACAACCGAGTGGACGAATGGAAGTATAGGAATTAAGGAA
                      ____________________________________________________________
consensus GCCCTCTTTGCTGGATATATGACAACCGAGTGGACGAATGGAAGTATAGGAATTAAGGAA
 
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rJMSF039F20+ GATGGCACAGTTGACCAGGCTGAGTTAGTGGTGGAGTATTTGAAGTTTTGTGAGAAATAC
rJMSF001N19+ GATGGCACAGTTGACCAGGCTGAGTTAGTGGTGGAGTATTTGAAGTTTTGTGAGAAATAC
                      ____________________________________________________________
consensus GATGGCACAGTTGACCAGGCTGAGTTAGTGGTGGAGTATTTGAAGTTTTGTGAGAAATAC
 
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rJMSF039F20+ CCGGTGCCATGGAGAATGATCCGTTCTCATGTGCACAAGATGTTGGGAGAATGGTTCAAG
rJMSF001N19+ CCGGTGCCATGGAGAATGATCCGTTCTCATGTGCACAAGATGTTGGGAGAATGGTTCAAG
rJMFF041M01+ GCCATGGAGAATGATCCGTTCTCATGTGCACAAGATGTTGGGAGAATGGTTCAAG
                      ____________________________________________________________
consensus CCGGTGCCATGGAGAATGATCCGTTCTCATGTGCACAAGATGTTGGGAGAATGGTTCAAG
 
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rJMSF039F20+ ATCCAGCCAGACGTAAGGGAGGATTTTAATAAACAATCCATTCTTACATTTGAATTTCTT
rJMSF001N19+ ATCCAGCCAGACGTAAGGGAGGATTTTAATAAACAATCCATTCTTACATTTGAATTTCTT
rJMFF041M01+ ATCCAGCCAGACGTAAGGGAGGATTTTAATAAACAATCCATTCTTACATTTGAATTTCTT
                      ____________________________________________________________
consensus ATCCAGCCAGACGTAAGGGAGGATTTTAATAAACAATCCATTCTTACATTTGAATTTCTT
 
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rJMSF039F20+ TATGGTTTGGTAAATCAGCTAAGGGAACGTGGTGTGCAGATACCTTTATACGTGAAGGAC
rJMSF001N19+ TATGGTTTGGTAAATCAGCTAAGGGAACGTGGTGTGCAGATACCTTTATACGTGAAGGAC
rJMFF041M01+ TATGGTTTGGTAAATCAGCTAAGGGAACGTGGTGTGCAGATACCTTTATACGTGAAGGAC
                      ____________________________________________________________
consensus TATGGTTTGGTAAATCAGCTAAGGGAACGTGGTGTGCAGATACCTTTATACGTGAAGGAC
 
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rJMSF039F20+ CCTAACAATGAAGGAATGTCTACAAATGGAATAGTTGCATGAGATCTGTTTTCTCATAAC
rJMSF001N19+ CCTAACAATGAAGGAATGTCTACAAATGGAATAGTTGCATGAGATCTGTTTTCTCATAAC
rJMFF041M01+ CCTAACAATGAAGGAATGTCTACAAATGGAATAGTTGCATGAGATCTGTTTTCTCATAAC
                      ____________________________________________________________
consensus CCTAACAATGAAGGAATGTCTACAAATGGAATAGTTGCATGAGATCTGTTTTCTCATAAC
 
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rJMSF039F20+ GATTTCATTCCAAGAACATCAATTTACTACTTGCTTTTGCTTATTGTTCTTTTGAGTCTT
rJMSF001N19+ GATTTCATTCCAAGAACATCAATTTACTACTTGCTTTTGCTTATTGTTCTTTTGAGTCTT
rJMFF041M01+ GATTTCATTCCAAGAACATCAATTTACTACTTGCTTTTGCTTATTGTTCTTTTGAGTCTT
                      ____________________________________________________________
consensus GATTTCATTCCAAGAACATCAATTTACTACTTGCTTTTGCTTATTGTTCTTTTGAGTCTT
 
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rJMSF039F20+ ACTTATCAGATGGTTACTGTGGTTCCCCAAATGAACACCGTGAAACCAGGCGGAGAAAGA
rJMSF001N19+ ACTTATCAGATGGTTACTGTGGTTCCCCAAATGAACACCGTGAAACCAGGCGGAGAAAGA
rJMFF041M01+ ACTTATCAGATGGTTACTGTGGTTCCCCAAATGAACCCCGTGAAACCAGGCGGAGAAAGA
                      ____________________________________________________________
consensus ACTTATCAGATGGTTACTGTGGTTCCCCAAATGAACACCGTGAAACCAGGCGGAGAAAGA
 
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rJMSF039F20+ AGAGCCTGGATATCATTAAATCTCGAGGTTAAAACTTAACCTTTCACTCACTGCATTAGT
rJMSF001N19+ AGAGCCTGGATATCATTAAATCTCGAGGTTAAAACTTAACCTTTCACTCACTGCATTAGT
rJMFF041M01+ AGAGCCTGGATATCATTAAATCTCGAGGTTAAAACTTAACCTTTCACTCACTGCATTAGT
                      ____________________________________________________________
consensus AGAGCCTGGATATCATTAAATCTCGAGGTTAAAACTTAACCTTTCACTCACTGCATTAGT
 
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rJMSF039F20+ ATTGATAGGAGTTTATACACAAGCATTTGTAATTCACCTGCCTGGATTCCCTGGAAAAAG
rJMSF001N19+ ATTGATAGGAGTTTATACACAAGCATTTGTAATTCACCTGCCTGGATTCCCTGGAAAAAG
rJMFF041M01+ ATTGATAGGAGTTTATACACAAGCATTTGTAATTCACCTGCCTGGATTCCCTGGAAAAAG
                      ____________________________________________________________
consensus ATTGATAGGAGTTTATACACAAGCATTTGTAATTCACCTGCCTGGATTCCCTGGAAAAAG
 
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rJMSF039F20+ GTTTGTATGTACCTT
rJMSF001N19+ GTTTGTATGTACCTT
rJMFF041M01+ GTTTGTATGTACCTTTATATAGTTTCACATGTATGGTTAATGAGCAGATATTTGAGGCTT
                      ____________________________________________________________
consensus GTTTGTATGTACCTTTATATAGTTTCACATGTATGGTTAATGAGCAGATATTTGAGGCTT