Contig 001176:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF040M22Sequence348000884 (6)ref|XP_009624390.1|3e-31PREDICTED: two pore calcium channel protein 1A-like [Nicotiana tomentosiformis]672001176 (4)sp|Q75VR0.1|TPC1B_TOBAC2e-63RecName: Full=Two pore calcium channel protein 1B; AltName: Full=Voltage-depende
JMSF025C07Sequence684000884 (6)ref|NP_001268025.1|5e-61two pore channel 1 [Vitis vinifera] gb|ACH53197.1| two pore channel 1 [Vitis vin764001176 (4)ref|XP_006357480.1|3e-86PREDICTED: two pore calcium channel protein 1B-like [Solanum tuberosum]
JMSF037N05Sequence615000884 (6)ref|NP_001268025.1|3e-62two pore channel 1 [Vitis vinifera] gb|ACH53197.1| two pore channel 1 [Vitis vin670001176 (4)ref|XP_006357480.1|9e-68PREDICTED: two pore calcium channel protein 1B-like [Solanum tuberosum]
JMSF044A06Sequence746000884 (6)ref|XP_010097904.1|1e-82Two pore calcium channel protein 1A [Morus notabilis] gb|EXB72967.1| Two pore ca747001176 (4)ref|XP_006357480.1|7e-89PREDICTED: two pore calcium channel protein 1B-like [Solanum tuberosum]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF044A06+ ATAAGGCTCTTGATGCATGTACGAAGTTATCGTGCCTTTGTAGCAA
                      ____________________________________________________________
consensus ATAAGGCTCTTGATGCATGTACGAAGTTATCGTGCCTTTGTAGCAA
 
. : . : . : . : . : . :
rJMSF044A06+ CATTTTTTGACTCTCATACCAAGTCTCATGCCATACTTAGGGACCATCTTCTGTGTATTG
rJMSF025C07+ TTTTGACTNTCATACCAAGTCTCATGCCATACTTAGGGACCATNTTCTGTGTATTG
                      ____________________________________________________________
consensus CATTTTTTGACTCTCATACCAAGTCTCATGCCATACTTAGGGACCATCTTCTGTGTATTG
 
. : . : . : . : . : . :
rJMSF044A06+ TGCTTTTANTGCTCTCTTGGTTTACAGATCTTTGGTGGGATGGTCAATGCTGGGAACCCC
rJMSF025C07+ GGCTTTTATTGCTCTCTTGGTTTACAGATCTTTGGTGGGATGGTCAATGCTGGGAACCCC
rJMSF037N05+ TTTGGTGGGATGGTCAATGCTGGGAACCCC
rJMFF040M22+ AACCCC
                      ____________________________________________________________
consensus TGCTTTTATTGCTCTCTTGGTTTACAGATCTTTGGTGGGATGGTCAATGCTGGGAACCCC
 
. : . : . : . : . : . :
rJMSF044A06+ AATTTAGATGGAACTGATCTTTCTGATAATGACTATTTGCTTTTCAACTTCAATGACTAT
rJMSF025C07+ AATTTAGATGGAACTGATCTTTCTGATAATGACTATTTGCTTTTCAACTTCAATGACTAT
rJMSF037N05+ AATTTAGATGGAACTGATCTTTCTGATAATGACTATTTGCTTTTCAACTTCAATGACTAT
rJMFF040M22+ AATTTAGATGGAACTGATCTTTCTGATAATGACTATTTGCTTTTCAACTTCAATGACTAT
                      ____________________________________________________________
consensus AATTTAGATGGAACTGATCTTTCTGATAATGACTATTTGCTTTTCAACTTCAATGACTAT
 
. : . : . : . : . : . :
rJMSF044A06+ CCAAATGGAATGGTGACACTTTTCAATTTGTTGGTGATGGGTAACTGGCAATTGTGGATG
rJMSF025C07+ CCAAATGGAATGGTGACACTTTTCAATTTGTTGGTGATGGGTAACTGGCAATTGTGGATG
rJMSF037N05+ CCAAATGGAATGGTGACACTTTTCAATTTGTTGGTGATGGGTAACTGGCAATTGTGGATG
rJMFF040M22+ CCAAATGGAATGGTGACACTTTTCAATTTGTTGGTGATGGGTAACTGGCAATTGTGGATG
                      ____________________________________________________________
consensus CCAAATGGAATGGTGACACTTTTCAATTTGTTGGTGATGGGTAACTGGCAATTGTGGATG
 
. : . : . : . : . : . :
rJMSF044A06+ CAGAGCTACAAGGAATTGACTGGGACTTCTTGGAGTTATGTCTACTTTATCAGTTTCTAT
rJMSF025C07+ CAGAGCTACAAGGAATTGACTGGGACTTCTTGGAGTTATGTCTACTTTATCAGTTTCTAT
rJMSF037N05+ CAGAGCTACAAGGAATTGACTGGGACTTCTTGGAGTTATGTCTACTTTATCAGTTTCTAT
rJMFF040M22+ CAGAGCTACAAGGAATTGACTGGGACTTCTTGGAGTTATGTCTACTTTATCAGTTTCTAT
                      ____________________________________________________________
consensus CAGAGCTACAAGGAATTGACTGGGACTTCTTGGAGTTATGTCTACTTTATCAGTTTCTAT
 
. : . : . : . : . : . :
rJMSF044A06+ GTTATCACAGTTTTATGGCTCTTGAATTTGATTGTAGCATTTGTCTTGGAGGCTTTCCAA
rJMSF025C07+ GTTATCACAGTTTTATGGCTCTTGAATTTGATTGTAGCATTTGTCTTGGAGGCTTTCCAA
rJMSF037N05+ GTTATCACAGTTTTATGGCTCTTGAATTTGATTGTAGCATTTGTCTTGGAGGCTTTCCAA
rJMFF040M22+ GTTATCACAGTTTTATGGCTCTTGAATTTGATTGTAGCATTTGTCTTGGAGGCTTTCCAA
                      ____________________________________________________________
consensus GTTATCACAGTTTTATGGCTCTTGAATTTGATTGTAGCATTTGTCTTGGAGGCTTTCCAA
 
. : . : . : . : . : . :
rJMSF044A06+ ACTGAGATGGATATGGAAACTTCAGCAATTTGTGTGGATGGAGAGAACAAGGAAGAAAGA
rJMSF025C07+ ACTGAGATGGATATGGAAACTTCAGCAATTTGTGTGGATGGAGAGAACAAGGAAGAAAGA
rJMSF037N05+ ACTGAGATGGATATGGAAACTTCAGCAATTTGTGTGGATGGAGAGAACAAGGAAGAAAGA
rJMFF040M22+ ACTGAGATGGATATGGAAACTTCAGCAATTTGTGTGGATGGAGAGAACAAGGAAGAAAGA
                      ____________________________________________________________
consensus ACTGAGATGGATATGGAAACTTCAGCAATTTGTGTGGATGGAGAGAACAAGGAAGAAAGA
 
. : . : . : . : . : . :
rJMSF044A06+ GAAAGGGAGCGACGCCGTAAGTATGGCACAAAGACAAGGAGCCAGCGAGTTGATGCCCTC
rJMSF025C07+ GAAAGGGAGCGACGCCGTAAGTATGGCACAAAGACAAGGAGCCAGCGAGTTGATGCCCTC
rJMSF037N05+ GAAAGGGAGCGACGCCGTAAGTATGGCACAAAGACAAGGAGCCAGCGAGTTGATGCCCTC
rJMFF040M22+ GAAAGGGAGCGACGCCGTAAGTATGGCACAAAGACAAGGAGCCAGCGAGTTGATGCCCTC
                      ____________________________________________________________
consensus GAAAGGGAGCGACGCCGTAAGTATGGCACAAAGACAAGGAGCCAGCGAGTTGATGCCCTC
 
. : . : . : . : . : . :
rJMSF044A06+ CTCCATCATATGCTGAGCTCTGAACTGACACAGTGCTCCAGCCCATAATTCTCTCCACTC
rJMSF025C07+ CTCCATCATATGCTGAGCTCTGAACTAACACAGTGCTCCAGCCCATAATTCTCTCCACTC
rJMSF037N05+ CTCCATCATATGCTGAGCTCTGAACTGACACAGTGCTCCAGCCCATAATTCTCTCCACTC
rJMFF040M22+ CTCCATCATATGCTGAGCTCTGAACTGACACAGTGCTCCAGCCCATAATTCTCTCCACTC
                      ____________________________________________________________
consensus CTCCATCATATGCTGAGCTCTGAACTGACACAGTGCTCCAGCCCATAATTCTCTCCACTC
 
. : . : . : . : . : . :
rJMSF044A06+ CAGGTCATGAATCCCTGACGGAGAAACCAGTACATCATTATCCACTAGGAAGTAGACCTC
rJMSF025C07+ CAGGTCATGAATCCCTGACGGAGAAACCAGTACATCATTATCCACTAGGAAGTAGACCTC
rJMSF037N05+ CAGGTCATGAATCCCTGACGGAGAAACCAGTACATCATTATCCACTAGGAAGTAGACCTC
rJMFF040M22+ CAGGTCATGAATCCCTGACGGAGAAACCAGTACATCATTATCCACTAGGAAGTAGACCTC
                      ____________________________________________________________
consensus CAGGTCATGAATCCCTGACGGAGAAACCAGTACATCATTATCCACTAGGAAGTAGACCTC
 
. : . : . : . : . : . :
rJMSF044A06+ TCGCATTAGGACGGACGTGTGCAGTTTCAGTTTGTGGATAGGCGCTTGGTGTTTAAATTA
rJMSF025C07+ TCGCATTAGGACGGACGTGTGCAGTTTCAGTTTGTGGATAGGCGCTTGGTGTTTAAATTA
rJMSF037N05+ TCGCATTAGGACGGACGTGTGCAGTTTCAGTTTGTGGATAGGCGCTTGGTGTTTAAATTA
rJMFF040M22+ TCGCATTAGGACGGACGTGTGCAGTTTCAGTTTGTGGATAGGCGCTTGGTGTTTAAATTA
                      ____________________________________________________________
consensus TCGCATTAGGACGGACGTGTGCAGTTTCAGTTTGTGGATAGGCGCTTGGTGTTTAAATTA
 
. : . : . : . : . : . :
rJMSF044A06+ TTGTACCATAGTCGCTCAC
rJMSF025C07+ TTGTACCATAGTCGCTCACATGCAAACTGGTGATGGTATTATCAGGAATTCAGGACTTTT
rJMSF037N05+ TTGTACCATAGTCGCTCACATGCAAACTGGTGATGGTATTATCAGGAATTCAGGACTTTT
rJMFF040M22+ TTGTACCATAGTCGCTCACATGCAAACTGGTGATGGTATTATCAGGAATTCAGGACTTTT
                      ____________________________________________________________
consensus TTGTACCATAGTCGCTCACATGCAAACTGGTGATGGTATTATCAGGAATTCAGGACTTTT
 
. : . : . : . : . : . :
rJMSF025C07+ GTTGGTGAATTTGAACCAGAATATTCTCTGTTGTGACTT
rJMSF037N05+ GTTGGTGAATTTGAACCAGAATATTCTCTGTTGTGACTT
rJMFF040M22+ GTTGGTGAATTTGAACCAGAATATTCTCTGTTGTGACTTTTTCCTTCAGTTTAAAGCACA
                      ____________________________________________________________
consensus GTTGGTGAATTTGAACCAGAATATTCTCTGTTGTGACTTTTTCCTTCAGTTTAAAGCACA