Contig 001166:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF030F18Sequence518000198 (6)ref|XP_006363650.1|1e-32PREDICTED: ferredoxin--NADP reductase, root-type isozyme, chloroplastic-like [S655001166 (6)ref|XP_004134584.1|1e-106PREDICTED: ferredoxin--NADP reductase, root isozyme, chloroplastic-like [Cucumi
JMFF033C18Sequence514000198 (6)ref|XP_006363650.1|6e-31PREDICTED: ferredoxin--NADP reductase, root-type isozyme, chloroplastic-like [S721001166 (6)gb|ACJ83525.1|2e-123unknown [Medicago truncatula]
JMFF035D23Sequence518000198 (6)ref|XP_006363650.1|1e-32PREDICTED: ferredoxin--NADP reductase, root-type isozyme, chloroplastic-like [S653001166 (6)ref|XP_004134584.1|6e-106PREDICTED: ferredoxin--NADP reductase, root isozyme, chloroplastic-like [Cucumi
JMFF037K05Sequence599000198 (6)ref|XP_006344529.1|5e-95PREDICTED: ferredoxin--NADP reductase, root-type isozyme, chloroplastic-like [S764001166 (6)gb|EYU19120.1|8e-137hypothetical protein MIMGU_mgv1a008446mg [Erythranthe guttata]
JMFF038J22Sequence583000198 (6)ref|XP_006344529.1|1e-53PREDICTED: ferredoxin--NADP reductase, root-type isozyme, chloroplastic-like [S750001166 (6)gb|EYU19120.1|1e-129hypothetical protein MIMGU_mgv1a008446mg [Erythranthe guttata]
JMFF051E04Sequence585000198 (6)ref|XP_006363650.1|3e-49PREDICTED: ferredoxin--NADP reductase, root-type isozyme, chloroplastic-like [S574001166 (6)ref|XP_004231567.1|1e-71PREDICTED: ferredoxin--NADP reductase, root-type isozyme, chloroplastic [Solanu

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF037K05+ TGTGTTAGACGCGCTGTTTATTATGATCCCGAGACAGGAAAAGAAGATCNTTCCAAAAA
rJMFF033C18+ AAAA
rJMFF038J22+ CCGAGACAGGAAAAGAAGATCNTTCCAAAAA
                      ____________________________________________________________
consensus TGTGTTAGACGCGCTGTTTATTATGATCCCGAGACAGGAAAAGAAGATCNTTCCAAAAA
 
. : . : . : . : . : . :
rJMFF037K05+ CGGAGTTTGCGGCAATTTTCTATGTGATTCAAACCCTGGAGACAAAGTGCAGATCACAGG
rJMFF033C18+ CGGAGTTTGCAGCAATTTTCTATGTGATTCAAAACCTGGAGACAAAGTGCAGATCACAGG
rJMFF038J22+ CGGAGTTTGCAGCAATTTTCTATGTGATTCAAAACCTGGAGACAAAGTGCAGATCACAGG
                      ____________________________________________________________
consensus CGGAGTTTGCAGCAATTTTCTATGTGATTCAAAACCTGGAGACAAAGTGCAGATCACAGG
 
. : . : . : . : . : . :
rJMFF037K05+ TCCTTCTGGAAAGATAATGCTTCTACCCGAAGATAACCCAAATGCCACCCACATTATGAT
rJMFF033C18+ TCCTTCTGGAAAGATATTGCTTCTACCCGAAGATAACCCAAATGCCACCCACATTATGAT
rJMFF035D23+ CTGGAAAGATATTGCTTCTACCCGAAGATAACCCAAATGCCACCCACATTATGAT
rJMFF030F18+ TCTGGAAAGATATTGCTTTTACCCGAAGATAACCCAAATGCCACCCACATTATGAT
rJMFF038J22+ TCCTTCTGGAAAGATAATGCTTCTACCCGAAGATAACCCAAATGCCACCCACATTATGAT
                      ____________________________________________________________
consensus TCCTTCTGGAAAGATATTGCTTCTACCCGAAGATAACCCAAATGCCACCCACATTATGAT
 
. : . : . : . : . : . :
rJMFF037K05+ TGCCACCGGTACCGGTGTGGCTCCCTTCAGAGGCTACCTTCGTCGCATGTTTATGGAATC
rJMFF033C18+ TGCCACCGGTACCGGTGTGGCTCCCTTCAGAGGCTACCTTCGTCGCATGTTTATGGAATC
rJMFF035D23+ TGCCACCGGTACCGGTGTGGCTCCCTTCAGAGGCTACCTTCGTCGCATGTTTATGGAATC
rJMFF030F18+ TGCCACCGGTACCGGTGTGGCTCCCTTCAGAGGCTACCTTCGTCGCATGTTTATGGAATC
rJMFF038J22+ TGCCACCGGTACCGGTGTGGCTCCCTTCAGAGGCTACCTTCGTCGCATGTTTATGGAATC
                      ____________________________________________________________
consensus TGCCACCGGTACCGGTGTGGCTCCCTTCAGAGGCTACCTTCGTCGCATGTTTATGGAATC
 
. : . : . : . : . : . :
rJMFF037K05+ CGTCCCCACATTCAAGTTCAACGGCCTCGCTTGGCTCTTCCTAGGGGTGGCCAACACCGA
rJMFF033C18+ CGTCCCCACATTCAAGTTCAACGGCCTCGCTTGGCTCTTCCTAGGGGTGGCCAACACCGA
rJMFF035D23+ CGTCCCCACATTCAAGTTCAACGGCCTCGCTTGGCTCTTCCTAGGGGTGGCCAACACCGA
rJMFF051E04+ ATTCAAGTTCAACGGCCTCGCTGGCTTCTTCCTAGGGGTGGCCAACACCGA
rJMFF030F18+ CGTCCCCACATTCAAGTTCAACGGCCTCGCTTGGCTCTTCCTAGGGGTGGCCAACACCGA
rJMFF038J22+ CGTCCCCACATTCAAGTTCAACGGCCTCGCTTGGCTCTTCCTAGGGGTGGCCAACACCGA
                      ____________________________________________________________
consensus CGTCCCCACATTCAAGTTCAACGGCCTCGCTTGGCTCTTCCTAGGGGTGGCCAACACCGA
 
. : . : . : . : . : . :
rJMFF037K05+ CAGTCTCCTGTACGACGATGAGTTCGCCAAGTATCTCCAGGACTTCCCAGATAATTTCAG
rJMFF033C18+ CAGTCTCCTGTACGACGATGAGTTCGCCAAGTATCTCCAGGACTTCCCAGATAATTTCAG
rJMFF035D23+ CAGTCTCCTGTACGACGATGAGTTCGCCAAGTATCTCCAGGACTTCCCAGATAATTTCAG
rJMFF051E04+ CAGTCTCCTGTACGACGATGAGTTCGCCAAGTATCTCCAGGACTTCCCAGATAATTTCAG
rJMFF030F18+ CAGTCTCCTGTACGACGATGAGTTCGCCAAGTATCTCCAGGACTTCCCAGATAATTTCAG
rJMFF038J22+ CAGTCTCCTGTACGACGATGAGTTCGCCAAGTATCTCCAGGACTTCCCAGATAATTTCAG
                      ____________________________________________________________
consensus CAGTCTCCTGTACGACGATGAGTTCGCCAAGTATCTCCAGGACTTCCCAGATAATTTCAG
 
. : . : . : . : . : . :
rJMFF037K05+ GTACGATCGTGTTCTTAGCCGAGAACAGAAGAACAAGAATGGAGGCAAGATGTATGTCCA
rJMFF033C18+ GTACGATCGTGTTCTTAGCCGAGAACAGAAGAACAAGAATGGAGGCAAGATGTATGTCCA
rJMFF035D23+ GTACGATCGTGTTCTTAGCCGAGAACAGAAGAACAAGAATGGAGGCAAGATGTATGTCCA
rJMFF051E04+ GTACGATCGTGTTCTTAGCCGAGAACAGAAGAACAAGAATGGAGGCAAGATGTATGTCCA
rJMFF030F18+ GTACGATCGTGTTCTTAGCCGAGAACAGAAGAACAAGAATGGAGGCAAGATGTATGTCCA
rJMFF038J22+ GTACGATCGTGTTCTTAGCCGAGAACAGAAGAACAAGAATGGAGGCAAGATGTATGTCCA
                      ____________________________________________________________
consensus GTACGATCGTGTTCTTAGCCGAGAACAGAAGAACAAGAATGGAGGCAAGATGTATGTCCA
 
. : . : . : . : . : . :
rJMFF037K05+ AGACAAAATCGAAGAATACAGCGACGAGATCTTCAAACTGCTCGATGAAGGTGCACACAT
rJMFF033C18+ AGACAAAATCGAAGAATACAGCGACGAGATCTTCAAACTGCTCGATGAAGGTGCACACAT
rJMFF035D23+ AGACAAAATCGAAGAATACAGCGACGAGATCTTCAAACTGCTCGATGAAGGTGCACACAT
rJMFF051E04+ AGACAAAATCGAAGAATACAGCGACGAGATCTTCAAACTGCTCGATGAAGGTGCACACAT
rJMFF030F18+ AGACAAAATCGAAGAATACAGCGACGAGATCTTCAAACTGCTCGATGAAGGTGCACACAT
rJMFF038J22+ AGACAAAATCGAAGAATACAGCGACGAGATCTTCAAACTGCTCGATGAAGGTGCACACAT
                      ____________________________________________________________
consensus AGACAAAATCGAAGAATACAGCGACGAGATCTTCAAACTGCTCGATGAAGGTGCACACAT
 
. : . : . : . : . : . :
rJMFF037K05+ CTATTTCTGCGGGTTGAAGGGCATGATGCCTGGAATTCAGGATACATTGAAGAGAGTCGC
rJMFF033C18+ CTATTTCTGCGGGTTGAAGGGCATGATGCCTGGAATTCAGGATACATTGAAGAGAGTCGC
rJMFF035D23+ CTATTTCTGCGGGTTGAAGGGCATGATGCCTGGAATTCAGGATACATTGAAGAGAGTCGC
rJMFF051E04+ CTATTTCTGCGGGTTGAAGGGCATGATGCCTGGAATTCAGGATACATTGAAGAGAGTCGC
rJMFF030F18+ CTATTTCTGCGGGTTGAAGGGCATGATGCCTGGAATTCAGGATACATTGAAGAGAGTCGC
rJMFF038J22+ CTATTTCTGCGGGTTGAAGGGCATGATGCCTGGAATTCAGGATACATTGAAGAGAGTCGC
                      ____________________________________________________________
consensus CTATTTCTGCGGGTTGAAGGGCATGATGCCTGGAATTCAGGATACATTGAAGAGAGTCGC
 
. : . : . : . : . : . :
rJMFF037K05+ AGAGGAGAGAGGGCTGAGCTGGGAGACCAAGCTTTCGCAGCTTAAGAAGAACAAACAATG
rJMFF033C18+ AGAGGAGAGAGGGCTGAGCTGGGAGACCAAGCTTTCGCAGCTTAAGAAGAACAAACAATG
rJMFF035D23+ AGAGGAGAGAGGGCTGAGCTGGGAGACCAAGCTTTCGCAGCTTAAGAAGAACAAACAATG
rJMFF051E04+ AGAGGAGAGAGGGCTGAGCTGGGAGACCAAGCTTTCGCAGCTTAAGAAGAACAAACAATG
rJMFF030F18+ AGAGGAGAGAGGGCTGAGCTGGGAGACCAAGCTTTCGCAGCTTAAGAAGAACAAACAATG
rJMFF038J22+ AGAGGAGAGAGGGCTGAGCTGGGAGACCAAGCTTTCGCAGCTTAAGAAGAACAAACAATG
                      ____________________________________________________________
consensus AGAGGAGAGAGGGCTGAGCTGGGAGACCAAGCTTTCGCAGCTTAAGAAGAACAAACAATG
 
. : . : . : . : . : . :
rJMFF037K05+ GCATGTTGAAGTGTACTGAGAATGTTGGGAACTTGAAAACTCAAAAGGAATCATGGATTA
rJMFF033C18+ GCATGTTGAAGTGTACTGAGAATGTTGGGAACTTGAAAACTCAAAAGGAATCATGGATTA
rJMFF035D23+ GCATGTTGAAGTGTACTGAGAATGTTGGGAACTTGAAAACTCAAAAGGAATCATGGATTA
rJMFF051E04+ GCATGTTGAAGTGTACTGA
rJMFF030F18+ GCATGTTGAAGTGTACTGAGAATGTTGGGAACTTGAAAACTCAAAAGGAATCATGGATTA
rJMFF038J22+ GCATGTTGAAGTGTACTGAGAATGTTGGGAACTTGAAAACTCAAAAGGAATCATGGATTA
                      ____________________________________________________________
consensus GCATGTTGAAGTGTACTGAGAATGTTGGGAACTTGAAAACTCAAAAGGAATCATGGATTA
 
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rJMFF037K05+ TGTTCTCCTGTTTGAAACAGTAATTGTTGGAAAAATGTTTAGAATTCTTGAAACTCAAGG
rJMFF033C18+ TGTTCTCCTGTTTGAAACAGTAATTGTTGGAAAAATGTTTAGAATTCTTGAAACTCAAGG
rJMFF035D23+ TGTTCTCCTGTTTGAAACAGTAATTGTTGGAAAAATGTTTAGAATTCTTGAAACTCAAGG
rJMFF030F18+ TGTTCTCCTGTTTGAAACAGTAATTGTTGGAAAAATGTTTAGAATTCTTGAAACTCAAGG
rJMFF038J22+ TGTTCTCCTGTTTGAAACAGTAATTGTTGGAAAAATGTTTAGAATTCTTGAAACTCAAGG
                      ____________________________________________________________
consensus TGTTCTCCTGTTTGAAACAGTAATTGTTGGAAAAATGTTTAGAATTCTTGAAACTCAAGG
 
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rJMFF037K05+ AGTCAAGGGAATCAAGATTGTATTCCTGTA-TTGAAACAGAAATAT
rJMFF033C18+ AGTCAAGGGAATCAAGATTGTATTCCTGTA-TTGAAACAGAAATATTGTTAGGAATAA
rJMFF035D23+ AGTCAAGGGAATCAAGATTGTATTCCTGTA-TTGAAACAGAAATATTGTTAGGAATAAA
rJMFF030F18+ AGTCAAGGGAATCAAGATTGTATTCCTGTATTTGAAACAGAAATATTGTTAGGAATAAA
rJMFF038J22+ AGTCAAGGGAATCAAGATTGTATTCCTGTA-TTGAAACAGAAATATTGTTAGGAATAAAT
                      ____________________________________________________________
consensus AGTCAAGGGAATCAAGATTGTATTCCTGTA-TTGAAACAGAAATATTGTTAGGAATAAAT