Contig 001162:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF034A18Sequence483000192 (6)gb|KDO47061.1|1e-59hypothetical protein CISIN_1g014714mg [Citrus sinensis]758001162 (6)ref|XP_009630346.1|2e-81PREDICTED: diphosphomevalonate decarboxylase-like [Nicotiana tomentosiformis]
JMFF037M24Sequence585000192 (6)ref|XP_002521172.1|5e-80diphosphomevalonate decarboxylase, putative [Ricinus communis] gb|EEF41203.1| di722001162 (6)ref|XP_009630346.1|1e-81PREDICTED: diphosphomevalonate decarboxylase-like [Nicotiana tomentosiformis]
JMSF013F18Sequence504000192 (6)ref|XP_002521172.1|3e-77diphosphomevalonate decarboxylase, putative [Ricinus communis] gb|EEF41203.1| di777001162 (6)emb|CDO99902.1|9e-60unnamed protein product [Coffea canephora]
JMSF014D03Sequence316000192 (6)gb|KJB78631.1|3e-42hypothetical protein B456_013G012400 [Gossypium raimondii]787001162 (6)ref|XP_006361468.1|2e-115PREDICTED: diphosphomevalonate decarboxylase-like [Solanum tuberosum]
JMSF026F24Sequence636000192 (6)ref|XP_006367129.1|6e-74PREDICTED: diphosphomevalonate decarboxylase-like [Solanum tuberosum]749001162 (6)ref|XP_009630346.1|2e-67PREDICTED: diphosphomevalonate decarboxylase-like [Nicotiana tomentosiformis]
JMSF048J08Sequence378000192 (6)ref|XP_002315441.1|3e-64mevalonate disphosphate decarboxylase family protein [Populus trichocarpa] gb|E787001162 (6)emb|CDO99902.1|4e-58unnamed protein product [Coffea canephora]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF014D03+ TTATACAGCACCGAGCAAA
                      ____________________________________________________________
consensus TTATACAGCACCGAGCAAA
 
. : . : . : . : . : . :
rJMSF014D03+ GGAGGTAGTACCCAAACGAGTAGTTCAAATGGAGGAAGCAATTAAAAATCGCGACTTTCC
                      ____________________________________________________________
consensus GGAGGTAGTACCCAAACGAGTAGTTCAAATGGAGGAAGCAATTAAAAATCGCGACTTTCC
 
. : . : . : . : . : . :
rJMSF014D03+ ATCTTTTGCCCATCTGTCTTGTGCAGATAGCAATCAGTTTCATGCAGTCTGCCTGGATAC
                      ____________________________________________________________
consensus ATCTTTTGCCCATCTGTCTTGTGCAGATAGCAATCAGTTTCATGCAGTCTGCCTGGATAC
 
. : . : . : . : . : . :
rJMSF014D03+ AACTCCCCCCATATTCTACATGAATGATACATCTCATAGGATAATTAGCTGTGTGGAGAA
rJMFF037M24+ CCCCCCATATTCTACATGAATGATACATCTCATAGGATAATTAGCTGTGTGGAGAA
                      ____________________________________________________________
consensus AACTCCCCCCATATTCTACATGAATGATACATCTCATAGGATAATTAGCTGTGTGGAGAA
 
. : . : . : . : . : . :
rJMSF014D03+ ATGGAACCGTTCGGAAGGAACTCCACAGGTTGCTTACACTTTTGATGCGGGGCCAAATGC
rJMFF034A18+ CAGGTTGCTTACACTTTTGATGCGGGGCCAAATAC
rJMSF013F18+ CAGGTTGCTTACACTTTTGATGCGGGGCCAAATGC
rJMSF048J08+ CAGGTTGCTTACACTTTTGATGCGGGGCCAAATGC
rJMSF026F24+ CAGGTTGCTTACACTTTTGATGCGGGGCCAAATGC
rJMFF037M24+ ATGGAACCGTTCGGAAGGAACTCCACAGGTTGCTTACACTTTTGATGCGGGGCCAAATGC
                      ____________________________________________________________
consensus ATGGAACCGTTCGGAAGGAACTCCACAGGTTGCTTACACTTTTGATGCGGGGCCAAATGC
 
. : . : . : . : . : . :
rJMSF014D03+ AGTTATGATTGCTCGCAATAGAAAGGCAGCTGCCCTTCTGGTTCAAAGACTGCTCTTTTA
rJMFF034A18+ AGTTATGATTGCTCGCAATAGAAAGGCAGCTGCCCTTCTGGTTCAAAGACTGCTCTTTTA
rJMSF013F18+ AGTTATGATTGCTCGCAATAGAAAGGCAGCTGCCCTTCTGGTTCAAAGACTGCTCTTTTA
rJMSF048J08+ AGTTATGATTGCTCGCAATAGAAAGGCAGCTGCCCTTCTGGTTCAAAGACTGCTCTTTTA
rJMSF026F24+ AGTTATGATTGCTCGCAATAGAAAGGCAGCTGCCCTTCTGGTTCAAAGACTGCTCTTTTA
rJMFF037M24+ AGTTATGATTGCTCGCAATAGAAAGGCAGCTGCCCTTCTGGTTCAAAGACTGCTCTTTTA
                      ____________________________________________________________
consensus AGTTATGATTGCTCGCAATAGAAAGGCAGCTGCCCTTCTGGTTCAAAGACTGCTCTTTTA
 
. : . : . : . : . : . :
rJMSF014D03+ CTTCCCTCCAAACTCGGATACTGATCTAAGCAGCTATGTCATAGGGGATAAATCAATACT
rJMFF034A18+ CTTCCCTCCAAACTCGGATACTGATCTAAGCAGCTATGTCATAGGGGATAAATCAATACT
rJMSF013F18+ CTTCCCTCCAAACTCGGATACTGATCTAAGCAGCTATGTCATAGGGGATAAATCAATACT
rJMSF048J08+ CTTCCCTCCAAACTCGGATACTGATCTAAGCAGCTATGTCATAGGGGATAAATCAATACT
rJMSF026F24+ CTT--CTCCAAACTCGGATACTGATCTAAGCAGCTATGTCATAGGGGATAAATCAATACT
rJMFF037M24+ CTTCCCTCCAAACTCGGATACTGATCTAAGCAGCTATGTCATAGGGGATAAATCAATACT
                      ____________________________________________________________
consensus CTTCCCTCCAAACTCGGATACTGATCTAAGCAGCTATGTCATAGGGGATAAATCAATACT
 
. : . : . : . : . : . :
rJMSF014D03+ CGGGGATGCTGGGATTAAGGACTTGAACGACGTGGAAGCACTTCCACCACCTCCAGAAAT
rJMFF034A18+ CGGGGATGCTGGGATTAAGGACTTGAACGACGTGGAAGCACTTCCACCACCTCCAGAAAT
rJMSF013F18+ CGGGGATGCTGGGATTAAGGACTTGAACGACGTGGAAGCACTTCCACCACCTCCAGAAAT
rJMSF048J08+ CGGGGATGCTGGGATTAAGGACTTGAACGACGTGGAAGCACTTCCACCACCTCCAGAAAT
rJMSF026F24+ CGGGGATGCTGGGATTAAGGACTTGAACGACGTGGAAGCACTTCCACCACCTCCAGAAAT
rJMFF037M24+ CGGGGATGCTGGGATTAAGGACTTGAACGACGTGGAAGCACTTCCACCACCTCCAGAAAT
                      ____________________________________________________________
consensus CGGGGATGCTGGGATTAAGGACTTGAACGACGTGGAAGCACTTCCACCACCTCCAGAAAT
 
. : . : . : . : . : . :
rJMSF014D03+ CAAGGACAACATTCCAACTAAGAACAAGGGCGATGTTAGTTACTTCATCTGCACGAGACC
rJMFF034A18+ CAAGGACAACATTCCAACTAAGAACAAGGGCGATGTTAGTTACTTCATCTGCACGAGACC
rJMSF013F18+ CAAGGACAACATTCCAACTAAGAACAAGGGCGATGTTAGTTACTTCATCTGCACGAGACC
rJMSF048J08+ CAAGGACAACATTCCAACTAAGAACAAGGGCGATGTTANTTACTTCATCTGCNCGAGACC
rJMSF026F24+ CAAGGACAACATTCCAACTAAGAACAAGGGCGATGTTAGTTACTTCATCTGCACGAGACC
rJMFF037M24+ CAAGGACAACATTCCAACTAAGAACAAGGGCGATGTTAGTTACTTCATCTGCACGAGACC
                      ____________________________________________________________
consensus CAAGGACAACATTCCAACTAAGAACAAGGGCGATGTTAGTTACTTCATCTGCACGAGACC
 
. : . : . : . : . : . :
rJMSF014D03+ TGGAAGAGGCCCGGTGGTTCTTAGTGATGAAACTCAAGCCCTCCTCAACCCTGAAACCGG
rJMFF034A18+ TGGAAGAGGCCCGGTGGTTCTTAGTGATGAAACTCAAGCCCTCCTCAACCCTGAAACCGG
rJMSF013F18+ TGGAAGAGGCCCGGTGGTTCTTAGTGATGAAACTCAAGCCCTCCTCAACCCTGAAACCGG
rJMSF048J08+ TGGAAGAGGCCCGGTGGTTCTTAGTGATGAAACTCAAGCCCTCCTCAACCCTGAAACCGG
rJMSF026F24+ TGGAAGAGGCCCGGTGGTTCTTAGTGATGAAACTCAAGCCCTCCTCAACCCTGAAACCGG
rJMFF037M24+ TGGAAGAGGCCCGGTGGTTCTTAGTGATGAAACTCAAGCCCTCCTCAACCCTGAAACCGG
                      ____________________________________________________________
consensus TGGAAGAGGCCCGGTGGTTCTTAGTGATGAAACTCAAGCCCTCCTCAACCCTGAAACCGG
 
. : . : . : . : . : . :
rJMSF014D03+ GTTACCCAAGTAAAGGACCAAGCGCTTCCTATCGCAGAAGCTACCATTCTAAAATGGTAA
rJMFF034A18+ GTTACCCAAGTAAAGGACCAAGCGCTTCCTATCGCAGAAGCTACCATTCTAAAATGGTAA
rJMSF013F18+ GTTACCCAAGTAAAGGACCAAGCGCTTCCTATCGCAGAAGCTACCATTCTAAAATGGTAA
rJMSF048J08+ GTTACCCAAGTAAAGGACCAAGCGCTTCCTATCGCAGAAGCTACCATTCTAAAATGGTAA
rJMSF026F24+ GTTACCCAAGTAAAGGACCAAGCGCTTCCTATCGCAGAAGCTACCATTCTAAAATGGTAA
rJMFF037M24+ GTTACCCAAGTAAAGGACCAAGCGCTTCCTATCGCAGAAGCTACCATTCTAAAATGGTAA
                      ____________________________________________________________
consensus GTTACCCAAGTAAAGGACCAAGCGCTTCCTATCGCAGAAGCTACCATTCTAAAATGGTAA
 
. : . : . : . : . : . :
rJMSF014D03+ AGTCTTGTGTAACCATTACAATTCGAGGCATTTTCTTCTTTCCTTTTTCGTTTCTTCCTG
rJMFF034A18+ AGTCTTGTGTAACCATTACAATTCGAGGCATTTTCTTCTTTCCTTTTTCGTTTCTTCCTG
rJMSF013F18+ AGTCTTGTGTAACCATTACAATTCGAGGCATTTTCTTCTTTCCTTTTTCGTTTCTTCCTG
rJMSF048J08+ AGTCTTGTGTAACCATTACAATTCGAGGCATTTTNTTCTTTCCTTTTTCGTTTCTTCCTG
rJMSF026F24+ AGTCTTGTGTAACCATTACAATTCGAGGCATTTTCTTCTTTCCTTTTTCGTTTCTTCCTG
rJMFF037M24+ AGTCTTGTGTAACCATTACAATTCGAGGCATTTTCTTCTTTCCTTTTTCGTTTCTTCCTG
                      ____________________________________________________________
consensus AGTCTTGTGTAACCATTACAATTCGAGGCATTTTCTTCTTTCCTTTTTCGTTTCTTCCTG
 
. : . : . : . : . : . :
rJMSF014D03+ GGTACCTTTTCGGGTTTTCCCATTAAACTCTTTTCGTGGATTCAGCTTTAAATATATGTT
rJMFF034A18+ GGTACCTTTTCGGGTTTTCCCATTAAACTCTTTTCGTGGATTCAGCTTTAAATATATGTT
rJMSF013F18+ GGTACCTTTTCGGGTTTTCCCATTAAACTCTTTTCGTGGATTCAGCTTTAAATATATGTT
rJMSF048J08+ GGTACCTTTTCGGGTTTTCCCATTAAACTCTTTTCGTGGATTCAGCTTTAAATATATGTT
rJMSF026F24+ GGTACCTTTTCGGGTTTTCCCATTAAACTCTTTTCGTGGATTCAGCTTTAAATATATGTT
rJMFF037M24+ GGTACCTTTTCGGGTTTTCCCATTAAACTCTTTTCGTGGATTCAGCTTTAAATATATGTT
                      ____________________________________________________________
consensus GGTACCTTTTCGGGTTTTCCCATTAAACTCTTTTCGTGGATTCAGCTTTAAATATATGTT
 
. : . : . : . : . : . :
rJMSF014D03+ TATGTTGTCAATAGCTGTGTACTCATATATTGTT
rJMFF034A18+ TATGTTGTCAATAGCTGTGTACTCATATATTGTTTAACTCTCACAGAACTACATGTTCTC
rJMSF013F18+ TATGTTGTCAATAGCTGTGTACTCATATATTGTTTAACTCTCACAGAACTACATGTTCTC
rJMSF048J08+ TATGTTGTCAATAGCTGTGTACTCATATATTGTTTAACTCTCNCAGAACTACATGTTCTC
rJMSF026F24+ TATGTTGTCAATAGCTGTGTACTCATATATTGTTTAACTCTCACAGAACTACATGTTCTC
rJMFF037M24+ TATGTTGTCAATAGCTGTGTACTCATATATTGTTTAACTCTCACAGAACTACATGTTCTC
                      ____________________________________________________________
consensus TATGTTGTCAATAGCTGTGTACTCATATATTGTTTAACTCTCACAGAACTACATGTTCTC
 
. : . : . : . : . : . :
rJMFF034A18+ TTGGAATTCATTCTTCCAGCATTCAGAAATAACTTTCTGTGATGGAT
rJMSF013F18+ TTGGAATTCATTCTTCCAGCATTCAGAAATA
rJMSF048J08+ TTGGAANTCATTCNTCCAGCATTCAGAAATA
rJMSF026F24+ TTGGAATTCATTCTTCCAGCATTCAGAAATA
rJMFF037M24+ TTGGAATTCATTCTTCCAGCATTCAGAAATAACTTTCTGTGATGGATTCCATCAATAAAG
                      ____________________________________________________________
consensus TTGGAATTCATTCTTCCAGCATTCAGAAATAACTTTCTGTGATGGATTCCATCAATAAAG