Contig 001153:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF016F03Sequence592017340ref|XP_009775943.1|2e-52PREDICTED: poly(U)-specific endoribonuclease-B [Nicotiana sylvestris]786001153 (3)ref|XP_009617663.1|1e-117PREDICTED: poly(U)-specific endoribonuclease-B [Nicotiana tomentosiformis]
JMFF036A06Sequence514017378ref|XP_009617663.1|5e-11PREDICTED: poly(U)-specific endoribonuclease-B [Nicotiana tomentosiformis]666001153 (3)ref|XP_006358620.1|3e-59PREDICTED: poly(U)-specific endoribonuclease-B-like [Solanum tuberosum]
JMFS026C06Sequence615001153 (3)ref|XP_006358620.1|3e-93PREDICTED: poly(U)-specific endoribonuclease-B-like [Solanum tuberosum]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF016F03+ GAGGGATATAAAGAAAATGTACCAG
                      ____________________________________________________________
consensus GAGGGATATAAAGAAAATGTACCAG
 
. : . : . : . : . : . :
rJMFF016F03+ CTCAAGANCAGCAAGAGCAGTTGGCGTTCATAGAGGAGATCAGTAGAACTGCACCTATAA
                      ____________________________________________________________
consensus CTCAAGANCAGCAAGAGCAGTTGGCGTTCATAGAGGAGATCAGTAGAACTGCACCTATAA
 
. : . : . : . : . : . :
JMFS026C06+ CTATCAGGAGTTCA
rJMFF016F03+ AATATCTCCATAAGTATCTGTCAGCAAAGCGTATGGTTTCTGAAAACTATCAGGAGTTCA
                      ____________________________________________________________
consensus AATATCTCCATAAGTATCTGTCAGCAAAGCGTATGGTTTCTGAAAACTATCAGGAGTTCA
 
. : . : . : . : . : . :
JMFS026C06+ AGAGAATGCTGAAAAGTCTCTGGTTTGACCTTTATGGCCGTGGTGGTACATCTGGTTCTT
rJMFF016F03+ AGAGAATGCTGAAAAGTCTCTGGTTTGACCTTTATGGCCGTGGTGGTACATCTGGTTCTT
                      ____________________________________________________________
consensus AGAGAATGCTGAAAAGTCTCTGGTTTGACCTTTATGGCCGTGGTGGTACATCTGGTTCTT
 
. : . : . : . : . : . :
JMFS026C06+ CTTCTGCTTTTGAACATGTTTTTGTTGGAGAAATCAAACAGCGCGGAGAGGAAGAAGTTT
rJMFF016F03+ CTTCTGCTTTTGAACATGTTTTTGTTGGAGAAATCAAACAGCGCGGAGAGGAAGAAGTTT
                      ____________________________________________________________
consensus CTTCTGCTTTTGAACATGTTTTTGTTGGAGAAATCAAACAGCGCGGAGAGGAAGAAGTTT
 
. : . : . : . : . : . :
JMFS026C06+ CAGGTTTCCATAATTGGCTTCAGTTCTATTTAGAGGAAGCAAAGGGCAATGTAGACTATC
rJMFF016F03+ CAGGTTTCCATAATTGGCTTCAGTTCTATTTAGAGGAAGCAAAGGGCAATGTAGACTATC
rJMFF036A06+ CAGTTCTATTTAGAGGAAGCAAAGGGCAATGTAGACTATC
                      ____________________________________________________________
consensus CAGGTTTCCATAATTGGCTTCAGTTCTATTTAGAGGAAGCAAAGGGCAATGTAGACTATC
 
. : . : . : . : . : . :
JMFS026C06+ AAGGATACATCTTTCCTCGAAGGCGGGGTGAAATTCCTGACTCGGAGACTCAGTTGCTCA
rJMFF016F03+ AAGGATACATCTTTCCTCGAAGGCGGGGTGAAATTCCTGACTCGGAGACTCAGTTGCTCA
rJMFF036A06+ AAGGATACATCTTTCCTCGAAGGCGGGGTGAAATTCCTGACTCGGAGACTCAGTTGCTCA
                      ____________________________________________________________
consensus AAGGATACATCTTTCCTCGAAGGCGGGGTGAAATTCCTGACTCGGAGACTCAGTTGCTCA
 
. : . : . : . : . : . :
JMFS026C06+ CAATTCAGTTTGAATGGAACGGTGTACTGAAATCTGTATCAAGCACTTTGGTTCGAGTGA
rJMFF016F03+ CAATTCAGTTTGAATGGAACGGTGTACTGAAATCTGTATCAAGCACTTTGGTTGGAGTGA
rJMFF036A06+ CAATTCAGTTTGAATGGAACGGTGTACTGAAATCTGTATCAAGCACTTTGGTTGGAGTGA
                      ____________________________________________________________
consensus CAATTCAGTTTGAATGGAACGGTGTACTGAAATCTGTATCAAGCACTTTGGTTGGAGTGA
 
. : . : . : . : . : . :
JMFS026C06+ GCCCGGAGTTTGAACTCGCCATCTATACTCTGTGTTTCTTTGCGGGAGGGCAGGAGAACC
rJMFF016F03+ GCCCGGAGTTTGAACTCGCCATCTATACTCTGTGTTTCTTTGCGGGAGGGCAGGAGAACC
rJMFF036A06+ GCCCGGAGTTTGAACTCGCCATCTATACTCTGTGTTTCTTTGCGGGAGGGCAGGAGAACC
                      ____________________________________________________________
consensus GCCCGGAGTTTGAACTCGCCATCTATACTCTGTGTTTCTTTGCGGGAGGGCAGGAGAACC
 
. : . : . : . : . : . :
JMFS026C06+ ATGTTGAGCTTGGTCCATACTCTGTCAATATCAAGTGCTATCACCTGGGAGACAAAATTG
rJMFF016F03+ ATGTTGAGCTTGGTCCATACTCTGTCAATATCAAGTGCTATCACCTGGGAGACAAAATTG
rJMFF036A06+ ATGTTGAGCTTGGTCCATACTCTGTCAATATCAAGTGCTATCACCTGGGAGACAAAATTG
                      ____________________________________________________________
consensus ATGTTGAGCTTGGTCCATACTCTGTCAATATCAAGTGCTATCACCTGGGAGACAAAATTG
 
. : . : . : . : . : . :
JMFS026C06+ GATCTGCTTTCCCAGTGGCTGAATGTTGAATATAAGGTAATCATATTTTATACCGTGTGA
rJMFF016F03+ GATCTGCTTTCCCAGTGGCTGAATGTTGAATATAAGGTAATCATATTTTATACCGTGTGA
rJMFF036A06+ GATCTGCTTTCCCAGTGGCTGAATGTTGAATATAAGGTAATCATATTTTATACCGTGTGA
                      ____________________________________________________________
consensus GATCTGCTTTCCCAGTGGCTGAATGTTGAATATAAGGTAATCATATTTTATACCGTGTGA
 
. : . : . : . : . : . :
JMFS026C06+ AAACATACATAATTTACATCCAGATTTATCAAACACTTGTAAGAATATGTATTTCAAGGA
rJMFF016F03+ AAACATACATAATTTACATCCAGATTTATCAAACACTTGTAAGAATATGTATTTCAAGGA
rJMFF036A06+ AAACATACATAATTTACATCCAGATTTATCAAACACTTGTAAGAATATGTATTTCAAGGA
                      ____________________________________________________________
consensus AAACATACATAATTTACATCCAGATTTATCAAACACTTGTAAGAATATGTATTTCAAGGA
 
. : . : . : . : . : . :
JMFS026C06+ AAGGTGTTGGGGCTTTATCTTTTC
rJMFF016F03+ AAGGTGTTGGGGCTTTATCTTTTCAGTAAACATTGTTGGAACTCATGGTTTATCACTAAA
rJMFF036A06+ AAGGTGTTGGGGCTTTATCTTTTCAGTAAACATTGTTGGAACTCATGGTTTATCACTAAA
                      ____________________________________________________________
consensus AAGGTGTTGGGGCTTTATCTTTTCAGTAAACATTGTTGGAACTCATGGTTTATCACTAAA
 
. : . : . : . : . : . :
rJMFF016F03+ CTTTACATGACATGTAATCTAGAGAAGTATTTTGGATATCA
rJMFF036A06+ CTTTACATGACATGTAATCTAGAGAAGTATTTTGGATATCAATGGATTGTTGGTTTCAAT
                      ____________________________________________________________
consensus CTTTACATGACATGTAATCTAGAGAAGTATTTTGGATATCAATGGATTGTTGGTTTCAAT
 
. : . : . : . : . : . :
rJMFF036A06+ TAGGTTCATGTTATTTAAGAATAGGTGTGTAATTACTGGATTGACAAATAATTTACCACA
                      ____________________________________________________________
consensus TAGGTTCATGTTATTTAAGAATAGGTGTGTAATTACTGGATTGACAAATAATTTACCACA