Contig 001150:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF035J01Sequence560003582 (5)emb|CDP19325.1|5e-66unnamed protein product [Coffea canephora]698001150 (4)ref|XP_006345040.1|1e-65PREDICTED: RNA-dependent RNA polymerase 2-like [Solanum tuberosum]
JMFS037G12Sequence614001150 (4)ref|XP_006345040.1|2e-65PREDICTED: RNA-dependent RNA polymerase 2-like [Solanum tuberosum]
JMSF010N11Sequence170003582 (5)769001150 (4)ref|XP_009623301.1|1e-90PREDICTED: RNA-dependent RNA polymerase 2 [Nicotiana tomentosiformis]
JMSF013H05Sequence537003582 (5)emb|CDP19325.1|2e-63unnamed protein product [Coffea canephora]774001150 (4)ref|XP_009796585.1|4e-84PREDICTED: RNA-dependent RNA polymerase 2 [Nicotiana sylvestris]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF010N11+ AAACAGGAGCTCCAGCTGAGATGCCGAGGTATTTGAANCC
rJMSF013H05+ CC
                      ____________________________________________________________
consensus AAACAGGAGCTCCAGCTGAGATGCCGAGGTATTTGAANCC
 
. : . : . : . : . : . :
rJMSF010N11+ AAGGGAGTTACNGGATTTCCTGGAGAGATGGGACAAGCCAATGTACATCTCCAATGGTGC
rJMSF013H05+ AAGGGAGTTACCGGATTTCCNGGAGAGATGGGACAAGCCAATGTACATCTCCAATGGTGC
                      ____________________________________________________________
consensus AAGGGAGTTACCGGATTTCCTGGAGAGATGGGACAAGCCAATGTACATCTCCAATGGTGC
 
. : . : . : . : . : . :
rJMSF010N11+ ACTGGGAAAACTTTATCGTGCTGTTAAGAAGTCAATCTTTAGTGGAGGAAGCTCAACCAA
rJMSF013H05+ ACTGGGAAAACTTTATCGTGCTGTTAAGAAGTCAATCTTTAGTGGAGGAAGCTCAACCAA
rJMFF035J01+ TGTTAAGAAGTCAATCTTTAGTGGAGGAAGCTCAACCAA
                      ____________________________________________________________
consensus ACTGGGAAAACTTTATCGTGCTGTTAAGAAGTCAATCTTTAGTGGAGGAAGCTCAACCAA
 
. : . : . : . : . : . :
rJMSF010N11+ TCATACAACTACAGTGGCAGCCATTGAAAACGCTTATGATCATGATCTTATTGTGGATGG
rJMSF013H05+ TCATACAACTACAGTGGCAGCCATTGAAAACGCTTATGATCATGATCTTATTGTGGATGG
JMFS037G12- GTGGCAGCCATTGAAAACGCTTATGATCATGATCTTATTGTGGATGG
rJMFF035J01+ TCATACAANTACAGTGGCAGCCATTGAAAACGCTTATGATCATGATCTTATTGTGGATGG
                      ____________________________________________________________
consensus TCATACAACTACAGTGGCAGCCATTGAAAACGCTTATGATCATGATCTTATTGTGGATGG
 
. : . : . : . : . : . :
rJMSF010N11+ TTATGAATCTTTCGTTCCAACTGCTGAAACTCACAAACAAATGTACATGGATAAACTGGG
rJMSF013H05+ TTATGAATCTTTCGTTCCAACTGCTGAAACTCACAAACAAATGTACATGGATAAACTGGG
JMFS037G12- TTATGAATCTTTCGTTCCAACTGCTGAAACTCACAAACAAATGTACATGGATAAACTGGG
rJMFF035J01+ TTATGAATCTTTCGTTCCAACTGCTGAAACTCACAAACAAATGTACATGGATAAACTGGG
                      ____________________________________________________________
consensus TTATGAATCTTTCGTTCCAACTGCTGAAACTCACAAACAAATGTACATGGATAAACTGGG
 
. : . : . : . : . : . :
rJMSF010N11+ AAGCTTGCTGAACTACTATGGAGCAGAAACTGAAGTCGAGATACTGACTGGGAATTTGCG
rJMSF013H05+ AAGCTTGCTGAACTACTATGGAGCAGAAACTGAAGTCGAGATACTGACTGGGAATTTGCG
JMFS037G12- AAGCTTGCTGAACTACTATGGAGCAGAAACTGAAGTCGAGATACTGACTGGGAATTTGCG
rJMFF035J01+ AAGCTTGCTGAACTACTATGGAGCAGAAACTGAAGTCGAGATACTGACTGGGAATTTGCG
                      ____________________________________________________________
consensus AAGCTTGCTGAACTACTATGGAGCAGAAACTGAAGTCGAGATACTGACTGGGAATTTGCG
 
. : . : . : . : . : . :
rJMSF010N11+ AAACAAGTCAACATATTTGCAGCGAGACAATAGGAGATTCTTTGAACTGAAGGATCGCAT
rJMSF013H05+ AAACAAGTCAACATATTTGCAGCGAGACAATAGGAGATTCTTTGAACTGAAGGATCGCAT
JMFS037G12- AAACAAGTCAACATATTTGCAGCGAGACAATAGGAGATTCTTTGAACTGAAGGATCGCAT
rJMFF035J01+ AAACAAGTCAACATATTTGCAGCGAGACAATAGGAGATTCTTTGAACTGAAGGATCGCAT
                      ____________________________________________________________
consensus AAACAAGTCAACATATTTGCAGCGAGACAATAGGAGATTCTTTGAACTGAAGGATCGCAT
 
. : . : . : . : . : . :
rJMSF010N11+ CTTGGTTTCTGCCAAGAGCCTACACAAGGAGGCCAAAGGGTGGTTTCACAGCAGCTGCGA
rJMSF013H05+ CTTGGTTTCTGCCAAGAGCCTACACAAGGAGGCCAAAGGGTGGTTTCACAGCAGCTGCGA
JMFS037G12- CTTGGTTTCTGCCAAGAGCCTACACAAGGAGGCCAAAGGGTGGTTTCACAGCAGCTGCGA
rJMFF035J01+ CTTGGTTTCTGCCAAGAGCCTACACAAGGAGGCCAAAGGGTGGTTTCACAGCAGCTGCGA
                      ____________________________________________________________
consensus CTTGGTTTCTGCCAAGAGCCTACACAAGGAGGCCAAAGGGTGGTTTCACAGCAGCTGCGA
 
. : . : . : . : . : . :
rJMSF010N11+ CGAGAGCAGTGAATCTAAGAAACTGGCATCAGCTTGGTATTTTGTGACATATCACCCCAG
rJMSF013H05+ CGAGAGCAGTGAATCTAAGAAACTGGCATCAGCTTGGTATTTTGTGACATATCACCCCAG
JMFS037G12- CGAGAGCAGTGAATCTAAGAAACTGGCATCAGCTTGGTATTTTGTGACATATCACCCCAG
rJMFF035J01+ CGAGAGCAGTGAATCTAAGAAACTGGCATCAGCTTGGTATTTTGTGACATATCACCCCAG
                      ____________________________________________________________
consensus CGAGAGCAGTGAATCTAAGAAACTGGCATCAGCTTGGTATTTTGTGACATATCACCCCAG
 
. : . : . : . : . : . :
rJMSF010N11+ CTATTGTAAAACAAGTGCTAATTGTCTTGGCTTTCCCTGGATTGTTGGTGATATTTTGCT
rJMSF013H05+ CTATTGTAAAACAAGTGCTAATTGTCTTGGCTTTCCCTGGATTGTTGGTGATATTTTGCT
JMFS037G12- CTATTGTAAAACAAGTGCTAATTGTCTTGGCTTTCCCTGGATTGTTGGTGATATTTTGCT
rJMFF035J01+ CTATTGTAAAACAAGTGCTAATTGTCTTGGCTTTCCCTGGATTGTTGGTGATATTTTGCT
                      ____________________________________________________________
consensus CTATTGTAAAACAAGTGCTAATTGTCTTGGCTTTCCCTGGATTGTTGGTGATATTTTGCT
 
. : . : . : . : . : . :
rJMSF010N11+ GGAAATCAAGTCACTTAAAAGCTGAACCAAGCTCTGCTCTGCTCCTAGGATGGATATCTA
rJMSF013H05+ GGAAATCAAGTCACTTAAAAGCTGAACCAAGCTCTGCTCTGCTCCTAGGATGGATATCTA
JMFS037G12- GGAAATCAAGTCACTTAAAAGCTGAACCAAGCTCTGCTCTGCTCCTAGGATGGATATCTA
rJMFF035J01+ GGAAATCAAGTCACTTAAAAGCTGAACCAAGCTCTGCTCTGCTCCTAGGATGGATATCTA
                      ____________________________________________________________
consensus GGAAATCAAGTCACTTAAAAGCTGAACCAAGCTCTGCTCTGCTCCTAGGATGGATATCTA
 
. : . : . : . : . : . :
rJMSF010N11+ GTAGACATTGCAACTTCATCACTATGAAGGAATAACTATTAACCTTATCTGTTGTATCTT
rJMSF013H05+ GTAGACATTGCAACTTCATCACTATGAAGGAATAACTATTAACCTTATCTGTTGTATCTT
JMFS037G12- GTAGACATTGCAACTTCATCACTATGAAGGAATAACTATTAACCTTATCTGTTGTATCTT
rJMFF035J01+ GTAGACATTGCAACTTCATCACTATGAAGGAATAACTATTAACCTTATCTGTTGTATCTT
                      ____________________________________________________________
consensus GTAGACATTGCAACTTCATCACTATGAAGGAATAACTATTAACCTTATCTGTTGTATCTT
 
. : . : . : . : . : . :
rJMSF010N11+ GTGTTTGCTCTAAGTATGACTCTTGTTATTATGTTGTAATAATATTAGAGTGAAAACCCA
rJMSF013H05+ GTGTTTGCTCTAAGTATGACTCTTGTTATTATGTTGTAATAATATTAGAGTGAAAACCCA
JMFS037G12- GTGTTTGCTCTAAGTATGACTCTTGTTATTATGTTGTAATAATATTAGAGTGAAAACCCA
rJMFF035J01+ GTGTTTGCTCTAAGTATGACTCTTGTTATTATGTTGTAATAATATTAGAGTGAAAACCCA
                      ____________________________________________________________
consensus GTGTTTGCTCTAAGTATGACTCTTGTTATTATGTTGTAATAATATTAGAGTGAAAACCCA
 
. : . : . : . : . : . :
rJMSF010N11+ TCAAATGTT
rJMSF013H05+ TCAAATGTTCTAANCATGGGTGAATTGGGATATTAAAAATCGATATCCA
JMFS037G12- TCAAATGTTCTAA
rJMFF035J01+ TCAAATGTTCTAA-CATGGGTGAATTGGGATATTAAAAATCGATATCCAAGTGCTTAGGT
                      ____________________________________________________________
consensus TCAAATGTTCTAANCATGGGTGAATTGGGATATTAAAAATCGATATCCAAGTGCTTAGGT