Contig 001149:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF002F14Sequence608001149 (7)ref|XP_009800601.1|2e-114PREDICTED: succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochon768001149 (7)ref|XP_004145686.1|5e-82PREDICTED: succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochon
JMFF022J20Sequence461001149 (7)ref|XP_009800601.1|1e-80PREDICTED: succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochon598001149 (7)gb|EYU34773.1|2e-65hypothetical protein MIMGU_mgv1a011509mg [Erythranthe guttata]
JMFF035C07Sequence530000197 (2)ref|XP_009598927.1|2e-92PREDICTED: succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochon746001149 (7)emb|CDP08405.1|4e-92unnamed protein product [Coffea canephora]
JMFF045A13Sequence613000197 (2)ref|XP_009800601.1|3e-115PREDICTED: succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochon571001149 (7)emb|CDP08405.1|5e-61unnamed protein product [Coffea canephora]
JMFN002C12Sequence498001149 (7)emb|CDP08405.1|3e-70unnamed protein product [Coffea canephora]

Alignment

This contig is upended


. : . : . : . : . : . :
JMFF002F14- ATTGGTTTTCCGGCCATGGCGTCCAGTTTGGTCCGACGAGCGATAACTAAGGTGTCA
                      ____________________________________________________________
consensus ATTGGTTTTCCGGCCATGGCGTCCAGTTTGGTCCGACGAGCGATAACTAAGGTGTCA
 
. : . : . : . : . : . :
JMFF002F14- TCCTCCCCGGCGGCGAAGATGACTTTGGCGAGAGCCCACGCTTCGGAGGCGAATGCCCCG
                      ____________________________________________________________
consensus TCCTCCCCGGCGGCGAAGATGACTTTGGCGAGAGCCCACGCTTCGGAGGCGAATGCCCCG
 
. : . : . : . : . : . :
JMFF022J20- AAGTTCCAAATTTACCGGTGGAGCCCCGAGAAC
JMFF002F14- CAGGCGACGGCGAGCGCGAAAATCAAGAAGTTCCAAATTTACCGGTGGAGCCCCGAGAAC
                      ____________________________________________________________
consensus CAGGCGACGGCGAGCGCGAAAATCAAGAAGTTCCAAATTTACCGGTGGAGCCCCGAGAAC
 
. : . : . : . : . : . :
JMFF022J20- CCACAGAAGCCGGAGCTGCAGGAGTACGAGATTGATCTGAAGGAGTGTGGGCCGATGGTG
JMFF002F14- CCACAGAAGCCGGAGCTGCAGGAGTACGAGATTGATCTGAAGGAGTGTGGGCCGATGGTG
                      ____________________________________________________________
consensus CCACAGAAGCCGGAGCTGCAGGAGTACGAGATTGATCTGAAGGAGTGTGGGCCGATGGTG
 
. : . : . : . : . : . :
JMFF022J20- CTGGACGCTCTGATCAAGATAAAGAACGAGATCGACCCGACGCTGACTTTCCGGCGGTCG
JMFF002F14- CTGGACGCTCTGATCAAGATAAAGAACGAGATCGACCCGACGCTGACTTTCCGGCGGTCG
rJMFF002F14+ CGGTCG
                      ____________________________________________________________
consensus CTGGACGCTCTGATCAAGATAAAGAACGAGATCGACCCGACGCTGACTTTCCGGCGGTCG
 
. : . : . : . : . : . :
JMFF022J20- TGCCGGGAGGGCATCTGCGGGTCGTGCGCGATGAACATCGACGGC-AAGAATGGGCTGGC
JMFF002F14- TGCCGGGAGGGCATCTGCGGGTCGTGCGCGATGAACATCGACGGC-AAGAATGGGCTGGC
rJMFF002F14+ TGCCGGGAGGGCATCTGCGGGTCGTGCGCGATGAACATCGACGGCAAAGAATGGGCTGGC
                      ____________________________________________________________
consensus TGCCGGGAGGGCATCTGCGGGTCGTGCGCGATGAACATCGACGGC-AAGAATGGGCTGGC
 
. : . : . : . : . : . :
JMFF022J20- CTGCCTGACGAAGATCTCGTCGGGGCCGGACTCGATGGTAACGCCGCTCCCACACATGTT
JMFF002F14- CTGCCTGACGAAGATCTCGTCGGGGCCGGACTCGATGGTAACGCCGCTCCCACACATGTT
rJMFF002F14+ CTGCCTGACGAAGATCTCGTCGGGGCCGGACTCGATGGTAACGCCGCTCCCACACATGTT
                      ____________________________________________________________
consensus CTGCCTGACGAAGATCTCGTCGGGGCCGGACTCGATGGTAACGCCGCTCCCACACATGTT
 
. : . : . : . : . : . :
JMFF022J20- CGTGATCAAGGATCTGGTGGTGGACATGACCAACTTCTACAACCA
JMFF002F14- CGTGATCAAGGATCTGGTGGTGGACATGACCAACTTCTACAA-CCAGTACAAGTCCATAG
rJMFF002F14+ CGTGATCAAGGATCTGGTGGTGGACATGACCAACTTCTACAACCCAGTACAAGTCCATAG
                      ____________________________________________________________
consensus CGTGATCAAGGATCTGGTGGTGGACATGACCAACTTCTACAACCCAGTACAAGTCCATAG
 
. : . : . : . : . : . :
JMFF002F14- AGCCATGGCTGAAGCGAAAGAACCCGCCGCCGATCCCCGGCAAGGAGGTCCTCCAGAGCA
rJMFF022J20+ CAGAGCA
rJMFF002F14+ AGCCATGGCTGAAGCGAAAGAACCCGCCGCCGATCCCCGGCAAGGAGGTCCTCCAGAGCA
rJMFF045A13+ CGGCAAAGAGATTCTTCAGAGCA
JMFN002C12- CAGAGCA
rJMFF035C07+ CAGAGCA
                      ____________________________________________________________
consensus AGCCATGGCTGAAGCGAAAGAACCCGCCGCCGATCCCCGGCAAGGAGGTCCTCCAGAGCA
 
. : . : . : . : . : . :
JMFF002F14- AAGCCGATAGATCTAAGCTCGACGGCATGTACGAGTGCATTCTCTGCGCCTGTTGTAGCA
rJMFF022J20+ AANCCGATAGATCTAAGCTCGACGGCATGTACGAGTGCATTCTCTGCGCCTGTTGTAGCA
rJMFF002F14+ AAGCCGATAGATCTAAGCTCGACGGCATGTACGAGTGCATTCTCTGCGCCTGTTGTAGCA
rJMFF045A13+ AGGCCGATAGAGTTAAGCTGGATGGGATGTTCGAGTGCATTTTTTGCGCCTGCTGTAGCA
JMFN002C12- AGGCCGATAGAGCTAAGCTGGATGGGATGTACGAGTGCATTCTCTGCGCCTGCTGTAGCA
rJMFF035C07+ AGGCCGATAGAGCTAAGCTGGATGGGATGTACGAGTGCATTCTCTGCGCCTGCTGTAGCA
                      ____________________________________________________________
consensus AGGCCGATAGATCTAAGCTGGATGGGATGTACGAGTGCATTCTCTGCGCCTGTTGTAGCA
 
. : . : . : . : . : . :
JMFF002F14- CATCCTGCCCTAG
rJMFF022J20+ CATCCTGCCCTAGTTACTGGTGGAACCCTGAGTCTTATCTTGGCCCCGCCGCTCTCCTCC
rJMFF002F14+ CATCCTGCCCTAGTTACTGGTGGAACCCTGAGTCTTATCTTGGCCCCGCCGCTCTCCTCC
rJMFF045A13+ CATCCTGCCCTAGTTACTGGTGGAACCCAGAGTTTTATTTTGGCCCCGCCGCCCTCCTCC
JMFN002C12- CATCCTGCCCTAGTTACTGGTGGAACCCAGAGTCTTATCTTGGCCCCGCCGCCCTCCTCC
rJMFF035C07+ CATCCTGCCCTAGTTACTGGTGGAACCCAGAGTCTTATCTTGGCCCCGCCGCCCTCCTCC
                      ____________________________________________________________
consensus CATCCTGCCCTAGTTACTGGTGGAACCCAGAGTCTTATCTTGGCCCCGCCGCCCTCCTCC
 
. : . : . : . : . : . :
rJMFF022J20+ ATGCCAACCGATGGATAATGGACAGCCGTGATGAATACACCAAGGAGCGTCTGGAGGCAG
rJMFF002F14+ ATGCCAACCGATGGATAATGGACAGCCGTGATGAATACACCAAGGAGCGTCTGGAGGCAG
rJMFF045A13+ ATGCCAACAGATGGATAATGGACAGCCGTGATGAATATACCAAGGCTCGCCTTGAAGCAG
JMFN002C12- ATGCCAACAGATGGATAATGGACAGCCGTGATGAATATACCAAGGAGCGCCTTGAAGCAG
rJMFF035C07+ ATGCCAACAGATGGATAATGGACAGCCGTGATGAATATACCAAGGAGCGCCTTGAAGCAG
                      ____________________________________________________________
consensus ATGCCAACAGATGGATAATGGACAGCCGTGATGAATATACCAAGGAGCGCCTTGAAGCAG
 
. : . : . : . : . : . :
rJMFF022J20+ TTGATCACGAGTTCAAACTTTATCGCTGCCATACAATCTTGAACTGCGCCAAAGCTTGCC
rJMFF002F14+ TTGATCACGAGTTCAAACTTTATCGCTGCCATACAATCTTGAACTGCGCCAAAGCTTGCC
rJMFF045A13+ TTGATCATGAATTCAAGCTTTATCGCTGCCATACTATTTTGAATTGTGCCAAAGCTTGCC
JMFN002C12- TTGATCATGAATTCAAGCTTTATCGCTGCCATACTATTTTGAATTGTGCCAAAGCTTGCC
rJMFF035C07+ TTGATCATGAATTCAAGCTTTATCGCTGCCATACTATTTTGAATTGTGCCAAAGCTTGCC
                      ____________________________________________________________
consensus TTGATCATGAATTCAAGCTTTATCGCTGCCATACTATTTTGAATTGTGCCAAAGCTTGCC
 
. : . : . : . : . : . :
rJMFF022J20+ CAAAGGGATTGAATCCCGGGAAGCAAATCCAGAACATCAAGGCACTAGAGGTTAACAG
rJMFF002F14+ CAAAGGGATTGAATCCCGGGAAGCAAATCCAGAACATCAAGGCACTAGAGGTTAACAG
rJMFF045A13+ CAAAGGGACTGAATCCTGGAAAACAAATCCAGAATATCAAGGCACTAGAGGTTAACAGAC
JMFN002C12- CAAAGGGACTGAATCCTGGAAAACAAATCCAGAATATCAAGGCACTAGAGGTTAACAG
rJMFF035C07+ CAAAGGGACTGAATCCTGGAAAACAAATCCAGAATATCAAGGCACTAGAGGTTAACAGAC
                      ____________________________________________________________
consensus CAAAGGGACTGAATCCTGGAAAACAAATCCAGAATATCAAGGCACTAGAGGTTAACAGAC
 
. : . : . : . : . : . :
rJMFF045A13+ GATTTGTATGAATTCAGATTTTCTGTTTATGAAGTTAGTACCCCTTAGACAAAATAATAT
rJMFF035C07+ GATTTGTATGAATTCAGATTTTCTGTTTATGAAGTTAGTACACCTTAGACAAAATAATAT
                      ____________________________________________________________
consensus GATTTGTATGAATTCAGATTTTCTGTTTATGAAGTTAGTACCCCTTAGACAAAATAATAT
 
. : . : . : . : . : . :
rJMFF045A13+ GCTGATATGCAAACCTTCTGGTTTACCAATTTTTTGACCTTGTGTCCGAGGTCCTTGTTT
rJMFF035C07+ GCTGATATGCAAACCTTCTGGTTTACCAATTTTTTGACCTTGTGTCCGAGGTCCTTGTTT
                      ____________________________________________________________
consensus GCTGATATGCAAACCTTCTGGTTTACCAATTTTTTGACCTTGTGTCCGAGGTCCTTGTTT
 
. : . : . : . : . : . :
rJMFF045A13+ TTTTTAAAACTTTTGTAAGTCAGCTTGTGCCATCTTTAAACTATGTCTTGAGCATTATTT
rJMFF035C07+ CTCTTAAAACTTTTGTAAGTCAGCTTGTGCCATCTTTAAACTATGTCTTGAGCATTATTC
                      ____________________________________________________________
consensus TTTTTAAAACTTTTGTAAGTCAGCTTGTGCCATCTTTAAACTATGTCTTGAGCATTATTT
 
. : . : . : . : . : . :
rJMFF045A13+ TCCTATCCTTAATGGAAAGTGTGACGTTTTGGGGTACTGCACAGATGTACCTCACTGTGT
rJMFF035C07+ TCCTATCCTTAATGGAAAGTGTGACGTTCTGGGGTACTGCACAGATGTACCTCACTGTGT
                      ____________________________________________________________
consensus TCCTATCCTTAATGGAAAGTGTGACGTTTTGGGGTACTGCACAGATGTACCTCACTGTGT
 
. : . : . : . : . : . :
rJMFF045A13+ ATGTGTTT
rJMFF035C07+ ATGTGTTTATATATGCTTCAGTATGTTTATGTGTGCTGTTCTAATTAACAAATTTAGGAT
                      ____________________________________________________________
consensus ATGTGTTTATATATGCTTCAGTATGTTTATGTGTGCTGTTCTAATTAACAAATTTAGGAT