Contig 001138:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF031O11Sequence486003489 (5)ref|XP_009623685.1|7e-54PREDICTED: cyclin-T1-5-like [Nicotiana tomentosiformis]798001138 (4)ref|XP_009623685.1|4e-19PREDICTED: cyclin-T1-5-like [Nicotiana tomentosiformis]
JMSF015L10Sequence584003489 (5)ref|XP_009623685.1|2e-73PREDICTED: cyclin-T1-5-like [Nicotiana tomentosiformis]776001138 (4)ref|XP_009623685.1|3e-19PREDICTED: cyclin-T1-5-like [Nicotiana tomentosiformis]
JMSF024O20Sequence666003489 (5)ref|XP_009623685.1|6e-89PREDICTED: cyclin-T1-5-like [Nicotiana tomentosiformis]777001138 (4)ref|XP_009623685.1|3e-19PREDICTED: cyclin-T1-5-like [Nicotiana tomentosiformis]
JMSF045N13Sequence829003489 (5)ref|XP_009623685.1|1e-126PREDICTED: cyclin-T1-5-like [Nicotiana tomentosiformis]741001138 (4)ref|XP_009623685.1|2e-19PREDICTED: cyclin-T1-5-like [Nicotiana tomentosiformis]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF015L10+ AAAACAGCACTGCACAAT
                      ____________________________________________________________
consensus AAAACAGCACTGCACAAT
 
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rJMSF015L10+ CCAGCATCACTATTGATTCAGCCAAAGAGAATANTCAGAAAAAAGAGCTTCTGTCAATGT
rJMSF045N13+ AAAAAGAGCTTCTGTCAATGT
rJMSF024O20+ AGCATCACTATTGATTCAGCCNAAGAGAATATTCAG-AAAAAGAGCTTCTGTCAATGT
rJMFF031O11+ AGCATCACTATTGATTCAGCCAAAGAGAATAATCAGAAAAAAGAGCTTCTGTCAATGT
                      ____________________________________________________________
consensus CCAGCATCACTATTGATTCAGCCAAAGAGAATATTCAGAAAAAAGAGCTTCTGTCAATGT
 
. : . : . : . : . : . :
rJMSF015L10+ GTGGTGGATCTACTCAATCAGAAGCTGTGTCTCATAGCAAAAAGCCATGCATTTCAAGTA
rJMSF045N13+ GTGGTGGATCTACTCAATCAGAAGCTGTGTCTCATAGCAAAAAGCCATGCATTTCAAGTA
rJMSF024O20+ GTGGTGGATCTACTCAATCAGAAGCTGTGTCTCATAGCAAAAAGCCATGCATTTCAAGTA
rJMFF031O11+ GTGGTGGATCTACTCAATCAGAAGCTGTGTCTCATAGCAAAAAGCCATGCATTTCAAGTA
                      ____________________________________________________________
consensus GTGGTGGATCTACTCAATCAGAAGCTGTGTCTCATAGCAAAAAGCCATGCATTTCAAGTA
 
. : . : . : . : . : . :
rJMSF015L10+ GTTCAGTTATTGCTCAGGATTCTAGCTGTACATCAACGGTGCAGACTGGAGTGCTTCCTA
rJMSF045N13+ GTTCAGTTATTGCTCAGGATTCTAGCTGTACATCAACGGTGCAGACTGGAGTGCTTCCTA
rJMSF024O20+ GTTCAGTTATTGCTCAGGATTCTAGCTGTACATCAACGGTGCAGACTGGAGTGCTTCCTA
rJMFF031O11+ GTTCAGTTATTGCTCAGGATTCTAGCTGTACATCAACGGTGCAGACTGGAGTGCTTCCTA
                      ____________________________________________________________
consensus GTTCAGTTATTGCTCAGGATTCTAGCTGTACATCAACGGTGCAGACTGGAGTGCTTCCTA
 
. : . : . : . : . : . :
rJMSF015L10+ AAAGTGCGATCTCCAGAAACAGCAGTGAACCGTCAAACGCTGTTGTTGAGTCTATCTACG
rJMSF045N13+ AAAGTGCGATCTCCAGAAACAGCAGTGAACCGTCAAACGCTGTTGTTGAGTCTATCTACG
rJMSF024O20+ AAAGTGCGATCTCCAGAAACAGCAGTGAACCGTCAAACGCTGTTGTTGAGTCTATCTACG
rJMFF031O11+ AAAGTGCGATCTCCAGAAACAGCAGTGAACCGTCAAACGCTGTTGTTGAGTCTATCTACG
                      ____________________________________________________________
consensus AAAGTGCGATCTCCAGAAACAGCAGTGAACCGTCAAACGCTGTTGTTGAGTCTATCTACG
 
. : . : . : . : . : . :
rJMSF015L10+ AGAAGGAGCATTTGGATATTAGTGATTGTGGTAGTGCAAATAGTGTAGTTGAGGATGGTA
rJMSF045N13+ AGAAGGAGCATTTGGATATTAGTGATTGTGGTAGTGCAAATAGTGTAGTTGAGGATGGTA
rJMSF024O20+ AGAAGGAGCATTTGGATATTAGTGATTGTGGTAGTGCAAATAGTGTAGTTGAGGATGGTA
rJMFF031O11+ AGAAGGAGCATTTGGATATTAGTGATTGTGGTAGTGCAAATAGTGTAGTTGAGGATGGTA
                      ____________________________________________________________
consensus AGAAGGAGCATTTGGATATTAGTGATTGTGGTAGTGCAAATAGTGTAGTTGAGGATGGTA
 
. : . : . : . : . : . :
rJMSF015L10+ GCAGTGAGCCTAGAATGGGACAGGCCAAACAAGAACCTTGCAACACTGTTTCTGCTGAAG
rJMSF045N13+ GCAGTGAGCCTAGAATGGGACAGGCCAAACAAGAACCTTGCAACACTGTTTCTGCTGAAG
rJMSF024O20+ GCAGTGAGCCTAGAATGGGACAGGCCAAACAAGAACCTTGCAACACTGTTTCTGCTGAAG
rJMFF031O11+ GCAGTGAGCCTAGAATGGGACAGGCCAAACAAGAACCTTGCAACACTGTTTCTGCTGAAG
                      ____________________________________________________________
consensus GCAGTGAGCCTAGAATGGGACAGGCCAAACAAGAACCTTGCAACACTGTTTCTGCTGAAG
 
. : . : . : . : . : . :
rJMSF015L10+ AGCCCAAGAGGAAGATAGATGTTCATCGTATCAAAGAGACACTAAAGAGGAGAAAATTGG
rJMSF045N13+ AGCCCAAGAGGAAGATAGATGTTCATCGTATCAAAGAGACACTAAAGAGGAGAAAATTGG
rJMSF024O20+ AGCCCAAGAGGAAGATAGATGTTCATCGTATCAAAGAGACACTAAAGAGGAGAAAATTGG
rJMFF031O11+ AGCCCAAGAGGAAGATAGATGTTCATCGTATCAAAGAGACACTAAAGAGGAGAAAATTGG
                      ____________________________________________________________
consensus AGCCCAAGAGGAAGATAGATGTTCATCGTATCAAAGAGACACTAAAGAGGAGAAAATTGG
 
. : . : . : . : . : . :
rJMSF015L10+ ACAAAACTATGCACAAGAAAGTAGAGATGGACGATGAGATAGACAGTGAGGCGTGGATTG
rJMSF045N13+ ACAAAACTATGCACAAGAAAGTAGAGATGGACGATGAGATAGACAGTGAGGCGTGGATTG
rJMSF024O20+ ACAAAACTATGCACAAGAAAGTAGAGATGGACGATGAGATAGACAGTGAGGCGTGGATTG
rJMFF031O11+ ACAAAACTATGCACAAGAAAGTAGAGATGGACGATGAGATAGACAGTGAGGCGTGGATTG
                      ____________________________________________________________
consensus ACAAAACTATGCACAAGAAAGTAGAGATGGACGATGAGATAGACAGTGAGGCGTGGATTG
 
. : . : . : . : . : . :
rJMSF015L10+ AGAGAGAACTTGAAAAACCTTGCAACATTGTTTGTGCTGAAGGCCCCAAGAGGAAGATAG
rJMSF045N13+ AGAGAGAACTTGAAAAACCTTGCAACATTGTTTGTGCTGAAGGCCCCAAGAGGAAGATAG
rJMSF024O20+ AGAGAGAACTTGAAAAACCTTGCAACATTGTTTGTGCTGAAGGCCCCAAGAGGAAGATAG
rJMFF031O11+ AGAGAGAACTTGAAAAACCTTGCAACATTGTTTGTGCTGAAGGCCCCAAGAGGAAGATAG
                      ____________________________________________________________
consensus AGAGAGAACTTGAAAAACCTTGCAACATTGTTTGTGCTGAAGGCCCCAAGAGGAAGATAG
 
. : . : . : . : . : . :
rJMSF015L10+ ATGTTCATCGTATCAAAGAGACACTAAAGAGGAGAAAATTTGACAGAACTACACACAAGA
rJMSF045N13+ ATGTTCATCGTATCAAAGAGACACTAAAGAGGAGAAAATTTGACAGAACTACACACAAGA
rJMSF024O20+ ATGTTCATCGTATCAAAGAGACACTAAAGAGGAGAAAATTTGACAGAACTACACACAAGA
rJMFF031O11+ ATGTTCATCGTATCAAAGAGACACTAAAGAGGAGAAAATTTGACAGAACTACACACAAGA
                      ____________________________________________________________
consensus ATGTTCATCGTATCAAAGAGACACTAAAGAGGAGAAAATTTGACAGAACTACACACAAGA
 
. : . : . : . : . : . :
rJMSF015L10+ AAGTAGTGATGGGCAATGAGATAGACAGCGAGGCATGGATTGAGAGAGAACTTGAAAATC
rJMSF045N13+ AAGTAGTGATGGGCAATGAGATAGACAGCGAGGCATGGATTGAGAGAGAACTTGAAAATC
rJMSF024O20+ AAGTAGTGATGGGCAATGAGATAGACAGCGAGGCATGGATTGAGAGAGAACTTGAAAATC
rJMFF031O11+ AAGTAGTGATGGGCAATGAGATAGACAGCGAGGCATGGATTGAGAGAGAACTTGAAAATC
                      ____________________________________________________________
consensus AAGTAGTGATGGGCAATGAGATAGACAGCGAGGCATGGATTGAGAGAGAACTTGAAAATC
 
. : . : . : . : . : . :
rJMSF015L10+ TAGAATAGACCCTGATTTGAAATGTACATGTAAGCACGACAAGGGAAAAGCCCTGGTTTA
rJMSF045N13+ TAGAATAGACCCTGATTTGAAATGTACATGTAAGCACGACAAGGGAAAAGCCCTGGTTTA
rJMSF024O20+ TAGAATAGACCCTGATTTGAAATGTACATGTAAGCACGACAAGGGAAAAGCCCTGGTTTA
rJMFF031O11+ TAGAATAGACCCTGATTTGAAATGTACATGTAAGCACGACAAGGGAAAAGCCCTGGTTTA
                      ____________________________________________________________
consensus TAGAATAGACCCTGATTTGAAATGTACATGTAAGCACGACAAGGGAAAAGCCCTGGTTTA
 
. : . : . : . : . : . :
rJMSF015L10+ GAATGTAC
rJMSF045N13+ GAATGTACACGTAAGCAGAAC
rJMSF024O20+ GAATGTAC
rJMFF031O11+ GAATGTACACGTAAGCAGAACAAGAGTAACGTACAGATTGAGTTCTATGAGGAAATCAAT
                      ____________________________________________________________
consensus GAATGTACACGTAAGCAGAACAAGAGTAACGTACAGATTGAGTTCTATGAGGAAATCAAT