Contig 001135:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF035H19+                                                             CTAGTCAGG
                      ____________________________________________________________
consensus                                                                CTAGTCAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF035H19+          TACNTCTTGAGGATAATGTGCCTAGTAAGATTACTCCACCTCCTCCAAAGAAGCAGCCAG
rJMFF030H07+                                                      CCAAAGAAGCAGCCAG
                      ____________________________________________________________
consensus             TACNTCTTGAGGATAATGTGCCTAGTAAGATTACTCCACCTCCTCCAAAGAAGCAGCCAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF035H19+          TCAATATGCTAGAGGGAAAAAGTAGGCTAGCTGAGTTTCGTAGTCCTACTCTATACAAGG
rJMFF030H07+          TCAATATGCTAGAGGGAAAAAGTAGGCTAGCCGAGTTTCGTAGTCCCACACTATACAAGG
                      ____________________________________________________________
consensus             TCAATATGCTAGAGGGAAAAAGTAGGCTAGCTGAGTTTCGTAGTCCTACTCTATACAAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF035H19+          ATGAAGAGAAGATGAGGGCTGCAATGAAAGAGCAGGCCTATGTGCCTGATACCAGATATG
rJMFF030H07+          ATGAAGAGAAGATGAGAGCTGCAATGAAAGAGCAGGCCTATGTGCCTGATACCAGATATG
                      ____________________________________________________________
consensus             ATGAAGAGAAGATGAGGGCTGCAATGAAAGAGCAGGCCTATGTGCCTGATACCAGATATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF035H19+          TTCTTCATGATATTGATCAAGAGGCGAAGGAGCAGGCCTTGCTATATCATAGCGAGCGCT
rJMFF030H07+          TTCTTCATGATATTGATCAAGAGGCAAAGGAGCAGGCCTTGCTATATCATAGCGAGCGCT
                      ____________________________________________________________
consensus             TTCTTCATGATATTGATCAAGAGGCGAAGGAGCAGGCCTTGCTATATCATAGCGAGCGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF035H19+          TAGCCATTGCATATGGTCTCATTAGTACCCCAGCTAGAACACCTTTGCGTATAATCAAGA
rJMFF030H07+          TAGCCATTGCATATGGTCTCATTAGTACGCCAGCTAGAACACCTTTGCGTATAATCAAGA
                      ____________________________________________________________
consensus             TAGCCATTGCATATGGTCTCATTAGTACGCCAGCTAGAACACCTTTGCGTATAATCAAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF035H19+          ACTTACGTGTCTGTGGTGATTGCCATAATGCCATCAAGATCATGTCCAGAATTGTTGGGA
rJMFF030H07+          ACTTACGTGTCTGTGGTGATTGCCATAATGCCATCAAGATCATGTCCAGAATTGTTGGGA
                      ____________________________________________________________
consensus             ACTTACGTGTCTGTGGTGATTGCCATAATGCCATCAAGATCATGTCCAGAATTGTTGGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF035H19+          GAGAGTTGATTGTTAGGGATAACAAGCGTTTCCATCATTTCAAGGATGGAAAATGCTCTT
rJMFF030H07+          GAGAGTTGATTGTTAGGGATAACAAGCGTTTCCATCATTTCAAGGATGGAAAATGCTCTT
                      ____________________________________________________________
consensus             GAGAGTTGATTGTTAGGGATAACAAGCGTTTCCATCATTTCAAGGATGGAAAATGCTCTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF035H19+          GTGGAGACTATTGGTAGTTACAACAACTGGAACTCGTGATTAGTAGA             
rJMFF030H07+          GTGGAGACTATTGGTAGTTACAACAACTGGAACTCATGATTAGTAGACTGGTAGAAACAC
                      ____________________________________________________________
consensus             GTGGAGACTATTGGTAGTTACAACAACTGGAACTCGTGATTAGTAGACTGGTAGAAACAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031G05+                                      TGATACGTTCATTGGCAAAACATATCAGCGAA
rJMFF030H07+          CTTCAAGGCCTAACAGGAACCATTACTGTGATACGTTCATTGGCAAAACATATCAGCGAA
                      ____________________________________________________________
consensus             CTTCAAGGCCTAACAGGAACCATTACTGTGATACGTTCATTGGCAAAACATATCAGCGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031G05+          GGAAGAAGAAGGTGGCAGCAGCCTAGGACTTTTTCAAAATAAATATTTCCTATCTTCTTG
rJMFF030H07+          GGAAGAAGAAGGTGGCAGCAGCCTAGGACTTTTTCAAAATAAATATTTCCTATCTTCTTG
                      ____________________________________________________________
consensus             GGAAGAAGAAGGTGGCAGCAGCCTAGGACTTTTTCAAAATAAATATTTCCTATCTTCTTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031G05+          TTTGTTAACGTTACTATTAGTTTGTTAACGTTATTATTAGTTTTGCTTCTCCTGCTTTCT
rJMFF030H07+          TTTGTTAACGTTACTATTAGTTTGTTAACGTTATTATTAGTTTTGCTTCTCCTGCTTTCT
                      ____________________________________________________________
consensus             TTTGTTAACGTTACTATTAGTTTGTTAACGTTATTATTAGTTTTGCTTCTCCTGCTTTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031G05+          AGGATAGGTTCTTTATTTCTTGTATTTAAGTCTCGCCATGCATGGGGGGAGATCATCTTG
rJMFF030H07+          AGGATAGGTTCTTTATTTCTTGTATTTAAGTCTCGCCATGCATGGGGGGAGATCATCTTG
                      ____________________________________________________________
consensus             AGGATAGGTTCTTTATTTCTTGTATTTAAGTCTCGCCATGCATGGGGGGAGATCATCTTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031G05+          GATTTTATTTTT                                                
rJMFF030H07+          GATTTTATTTTTTGGCTTTCAAGTATATGAAAGATTGGGAGGAGAAGCACTCCAGAAACG
                      ____________________________________________________________
consensus             GATTTTATTTTTTGGCTTTCAAGTATATGAAAGATTGGGAGGAGAAGCACTCCAGAAACG