Contig 001134:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMCP016G09Sequence611001134 (7)gb|ABR25526.1|4e-12226S protease regulatory subunit 8 [Oryza sativa Indica Group]
JMFF030F04Sequence381013255 (6)ref|XP_009599866.1|3e-60PREDICTED: 26S protease regulatory subunit 8 homolog A [Nicotiana tomentosiform741001134 (7)gb|ABR25526.1|2e-12026S protease regulatory subunit 8 [Oryza sativa Indica Group]
JMFF030F15Sequence174013255 (6)ref|XP_006338168.1|9e-12PREDICTED: 26S protease regulatory subunit 8 homolog A-like [Solanum tuberosum]698001134 (7)gb|ABR25526.1|2e-11526S protease regulatory subunit 8 [Oryza sativa Indica Group]
JMFF048K18Sequence440013255 (6)ref|XP_009599866.1|1e-58PREDICTED: 26S protease regulatory subunit 8 homolog A [Nicotiana tomentosiform253001134 (7)gb|EAZ01563.1|3e-04hypothetical protein OsI_23594 [Oryza sativa Indica Group]
JMSF009G10Sequence466013255 (6)ref|XP_009599866.1|6e-69PREDICTED: 26S protease regulatory subunit 8 homolog A [Nicotiana tomentosiform709001134 (7)gb|ABR25526.1|1e-13026S protease regulatory subunit 8 [Oryza sativa Indica Group]
JMSF020I20Sequence663013255 (6)ref|XP_006338168.1|3e-105PREDICTED: 26S protease regulatory subunit 8 homolog A-like [Solanum tuberosum]773001134 (7)ref|XP_006287833.1|4e-149hypothetical protein CARUB_v10001052mg [Capsella rubella] gb|EOA20731.1| hypothe
JMSF044E23Sequence798013255 (6)ref|XP_009599866.1|1e-134PREDICTED: 26S protease regulatory subunit 8 homolog A [Nicotiana tomentosiform778001134 (7)gb|ABR25526.1|1e-12926S protease regulatory subunit 8 [Oryza sativa Indica Group]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF020I20+ CTGGAATTGCCCAACCAAAGGGAGTACTGCTTTATGG
                      ____________________________________________________________
consensus CTGGAATTGCCCAACCAAAGGGAGTACTGCTTTATGG
 
. : . : . : . : . : . :
rJMSF020I20+ ACCTCCAGGAACTGGGAAACACTGTTGGCAAGAGCTGTTGCACATCATACTGATTGTACC
                      ____________________________________________________________
consensus ACCTCCAGGAACTGGGAAACACTGTTGGCAAGAGCTGTTGCACATCATACTGATTGTACC
 
. : . : . : . : . : . :
rJMSF020I20+ TTCATTAGGGTTTCTGGCTCTGAACTAGTGCAAAAATATATTGGAGAAGGCTCTCGAATG
rJMSF044E23+ AAATATATTGGAGAAGGCTCTCGAATG
rJMSF009G10+ CAAAAATATATTGGAGAAGGCTCTCGAATG
                      ____________________________________________________________
consensus TTCATTAGGGTTTCTGGCTCTGAACTAGTGCAAAAATATATTGGAGAAGGCTCTCGAATG
 
. : . : . : . : . : . :
rJMSF020I20+ GTGAGAGAACTTTTTGTAATGGCCAGAGAACATGCTCCGTCTATTATATTTATGGATGAA
JMCP016G09- GTGAGAGAACTTTTTGTAATGGCCAGAGAACATGCTCCGTCTATTATATTTATGGATGAA
rJMSF044E23+ GTGAGAGAACTTTTTGTAATGGCCAGAGAACATGCTCCGTCTATTATATTTATGGATGAA
rJMFF030F04+ GTGAGAGANCTTTTTGTAATGGCCAGAGAACATGCTCCGTCTATTATATTTATGGATGAA
rJMSF009G10+ GTGAGAGAACTTTTTGTAATGGCCAGAGAACATGCTCCGTCTATTATATTTATGGATGAA
rJMFF030F15+ CCAGAGAACATGCTCCGTCTATTATATTTATGGATGAA
                      ____________________________________________________________
consensus GTGAGAGAACTTTTTGTAATGGCCAGAGAACATGCTCCGTCTATTATATTTATGGATGAA
 
. : . : . : . : . : . :
rJMSF020I20+ ATTGATAGCATTGGGTCAGCTAGAATGGAATCAGGAAGTGGGAATGGTGACAGTGAAGTG
JMCP016G09- ATTGATAGCATTGGGTCAGCTAGAATGGAATCAGGAAGTGGGAATGGTGACAGTGAAGTG
rJMSF044E23+ ATTGATAGCATTGGGTCAGCTAGAATGGAATCAGGAAGTGGGAATGGTGACAGTGAAGTG
rJMFF030F04+ ATTGATAGCATTGGGTCAGCTAGAATGGAATCAGGAAGTGGGAATGGTGACAGTGAAGTG
rJMSF009G10+ ATTGATAGCATTGGGTCAGCTAGAATGGAATCAGGAAGTGGGAATGGTGACAGTGAAGTG
rJMFF030F15+ ATTGATAGCATTGGGTCAGCTAGAATGGAATCAGGAAGTGGGAATGGTGACAGTGAAGTG
                      ____________________________________________________________
consensus ATTGATAGCATTGGGTCAGCTAGAATGGAATCAGGAAGTGGGAATGGTGACAGTGAAGTG
 
. : . : . : . : . : . :
rJMSF020I20+ CAACGCACAATGCTTGAGCTCCTTAACCAGCTTGATGGATTTGAGGCATCAAACAAGATC
JMCP016G09- CAACGCACAATGCTTGAGCTCCTTAACCAGCTTGATGGATTTGAGGCATCAAACAAGATC
rJMSF044E23+ CAACGCACAATGCTTGAGCTCCTTAACCAGCTTGATGGATTTGAGGCATCAAACAAGATC
rJMFF030F04+ CAACGCACAATGCTTGAGCTCCTTAACCAGCTTGATGGATTTGAGGCATCAAACAAGATC
rJMSF009G10+ CAACGCACAATGCTTGAGCTCCTTAACCAGCTTGATGGATTTGAGGCATCAAACAAGATC
rJMFF030F15+ CAACGCACAATGCTTGAGCTCCTTAACCAGCTTGATGGATTTGAGGCATCAAACAAGATC
                      ____________________________________________________________
consensus CAACGCACAATGCTTGAGCTCCTTAACCAGCTTGATGGATTTGAGGCATCAAACAAGATC
 
. : . : . : . : . : . :
rJMSF020I20+ AAGGTATTGATGGCCACAAACCGTATAGATATTCTGGATCAGGCCCTTCTCAGACCAGGA
JMCP016G09- AAGGTATTGATGGCCACAAACCGTATAGATATTCTGGATCAGGCCCTTCTCAGACCAGGA
rJMSF044E23+ AAGGTATTGATGGCCACAAACCGTATAGATATTCTGGATCAGGCCCTTCTCAGACCAGGA
rJMFF030F04+ AAGGTATTGATGGCCACAAACCGTATAGATATTCTGGATCAGGCCCTTCTCAGACCAGGA
rJMSF009G10+ AAGGTATTGATGGCCACAAACCGTATAGATATTCTGGATCAGGCCCTTCTCAGACCAGGA
rJMFF030F15+ AAGGTATTGATGGCCACAAACCGTATAGATATTCTGGATCAGGCCCTTCTCAGACCAGGA
                      ____________________________________________________________
consensus AAGGTATTGATGGCCACAAACCGTATAGATATTCTGGATCAGGCCCTTCTCAGACCAGGA
 
. : . : . : . : . : . :
rJMSF020I20+ AGAATTGACCGAAAAATTGAATTTCCAAATCCGAATGAAGAGTCTCGCTGGGATATCTTG
JMCP016G09- AGAATTGACCGAAAAATTGAATTTCCAAATCCGAATGAAGAGTCTCGCTGGGATATCTTG
rJMSF044E23+ AGAATTGACCGAAAAATTGAATTTCCAAATCCGAATGAAGAGTCTCGCTGGGATATCTTG
rJMFF030F04+ AGAATTGACCGAAAAATTGAATTTCCAAATCCGAATGAAGAGTCTCGCTGGGATATCTTG
rJMSF009G10+ AGAATTGACCGAAAAATTGAATTTCCAAATCCGAATGAAGAGTCTCGCTGGGATATCTTG
rJMFF030F15+ AGAATTGACCGAAAAATTGAATTTCCAAATCCGAATGAAGAGTCTCGCTGGGATATCTTG
                      ____________________________________________________________
consensus AGAATTGACCGAAAAATTGAATTTCCAAATCCGAATGAAGAGTCTCGCTGGGATATCTTG
 
. : . : . : . : . : . :
rJMSF020I20+ AAGATTCATTCTAGGAAAATGAACTTGATGCGTGGGATTGATCTAAAGAAGATAGCAGAA
JMCP016G09- AAGATTCATTCTAGGAAAATGAACTTGATGCGTGGGATTGATCTAAAGAAGATAGCAGAA
rJMSF044E23+ AAGATTCATTCTAGGAAAATGAACTTGATGCGTGGGATTGATCTAAAGAAGATAGCAGAA
rJMFF030F04+ AAGATTCATTCTAGGAAAATGAACTTGATGCGTGGGATTGATCTAAAGAAGATAGCAGAA
rJMSF009G10+ AAGATTCATTCTAGGAAAATGAACTTGATGCGTGGGATTGATCTAAAGAAGATAGCAGAA
rJMFF030F15+ AAGATTCATTCTAGGAAAATGAACTTGATGCGTGGGATTGATCTAAAGAAGATAGCAGAA
                      ____________________________________________________________
consensus AAGATTCATTCTAGGAAAATGAACTTGATGCGTGGGATTGATCTAAAGAAGATAGCAGAA
 
. : . : . : . : . : . :
rJMSF020I20+ AAGATGAATGGTGCTTCTGGTGCCGAACTTAAGGCTGTTTGTACTGAAGCGGGGATGTTT
JMCP016G09- AAGATGAATGGTGCTTCTGGTGCCGAACTTAAGGCTGTTTGTACTGAAGCGGGGATGTTT
rJMSF044E23+ AAGATGAATGGTGCTTCTGGTGCCGAACTTAAGGCTGTTTGTACTGAAGCGGGGATGTTT
rJMFF030F04+ AAGATGAATGGTGCTTCTGGTGCCGAACTTAAGGCTGTTTGTACTGAAGCGGGGATGTTT
rJMSF009G10+ AAGATGAATGGTGCTTCTGGTGCCGAACTTAAGGCTGTTTGTACTGAAGCGGGGATGTTT
rJMFF030F15+ AAGATGAATGGTGCTTCTGGTGCCGAACTTAAGGCTGTTTGTACTGAAGCGGGGATGTTT
                      ____________________________________________________________
consensus AAGATGAATGGTGCTTCTGGTGCCGAACTTAAGGCTGTTTGTACTGAAGCGGGGATGTTT
 
. : . : . : . : . : . :
rJMSF020I20+ GCTCTACGAGAAAGGAGGGTCCACGTGACACAGGAAGATTTTGAGATGGCAGTGGCGAAG
JMCP016G09- GCTCTACGAGAAAGGAGGGTCCACGTGACACAGGAAGATTTTGAGATGGCAGTGGCGAAG
rJMSF044E23+ GCTCTACGAGAAAGGAGGGTCCACGTGACACAGGAAGATTTTGAGATGGCAGTGGCGAAG
rJMFF030F04+ GCTCTACGAGAAAGGAGGGTCCACGTGACACAGGAAGATTTTGAGATGGCAGTGGCGAAG
rJMSF009G10+ GCTCTACGAGAAAGGAGGGTCCACGTGACACAGGAAGATTTTGAGATGGCAGTGGCGAAG
rJMFF048K18+ GATGGCAGTGGCGAAG
rJMFF030F15+ GCTCTACGAGAAAGGAGGGTCCACGTGACACAGGAAGATTTTGAGATGGCAGTGGCGAAG
                      ____________________________________________________________
consensus GCTCTACGAGAAAGGAGGGTCCACGTGACACAGGAAGATTTTGAGATGGCAGTGGCGAAG
 
. : . : . : . : . : . :
rJMSF020I20+ GTGATGAAGAAGGATACAGAGAAGAACATGTCATTGCGCAAGCTATGGAAGTAAGTAATT
JMCP016G09- GTGATGAAGAAGGATACAGAGAAGAACATGTCATTGCGCAAGCTATGGAAGTAAGTAATT
rJMSF044E23+ GTGATGAAGAAGGATACAGAGAAGAACATGTCATTGCGCAAGCTATGGAAGTAA
rJMFF030F04+ GTGATGAAGAAGGATACAGAGAAGAACATGTCATTGCGCAAGCTATGGAAGTAA
rJMSF009G10+ GTGATGAAGAAGGATACAGAGAAGAACATGTCATTGCGCAAGCTATGGAAGTAAGTAATT
rJMFF048K18+ GTGATGAAGAAGGATACAGAGAAGAACATGTCATTGCGCAAGCTATGGAAGTAAGTAATT
rJMFF030F15+ GTGATGAAGAAGGATACAGAGAAGAACATGTCATTGCGCAAGCTATGGAAGTAAGTAATT
                      ____________________________________________________________
consensus GTGATGAAGAAGGATACAGAGAAGAACATGTCATTGCGCAAGCTATGGAAGTAAGTAATT
 
. : . : . : . : . : . :
rJMSF020I20+ GAGACGTAGGTCGTCCCAGTTGTCATCTGGCAACACCGAATGCTTGCTAGTTTTTGAGTC
JMCP016G09- GAGACGTAGGTCGTCCCAGTTGTCATCTGGCAACACCGAATGCTTGCTAGTTTTTGAGTC
rJMSF009G10+ GAGACGTAGGTCGTCCCAGTTGTCATCTGGCAACACCGAATGCTTGCTAGTTTTTGAGTC
rJMFF048K18+ GAGACGTAGGTCGTCCCAGTTGTCATCTGGCAACACCGAATGCTTGCTAGTTTTTGAGTC
rJMFF030F15+ GAGACGTAGGTCGTCCCAGTTGTCATCTGGCAACACCGAATGCTTGCTAGTTTTTGAGTC
                      ____________________________________________________________
consensus GAGACGTAGGTCGTCCCAGTTGTCATCTGGCAACACCGAATGCTTGCTAGTTTTTGAGTC
 
. : . : . : . : . : . :
rJMSF020I20+ AGACTTGGAAGAAATT
JMCP016G09- AGACTTGGAAG
rJMSF009G10+ AGACTTGGAAGAAATTGTGTATGTTTTTACGATGCATAACGCACGAATGTACCCGTCCTA
rJMFF048K18+ AGACTTGGAAGAAATTGTGTATGTTTTTACGATGCATAACGCACGAATGTACCCGTCCTA
rJMFF030F15+ AGACTTGGAAGAAATTGTGTATGTTTTTACGATGCATAACGCACGAATGTACCCGTCCTA
                      ____________________________________________________________
consensus AGACTTGGAAGAAATTGTGTATGTTTTTACGATGCATAACGCACGAATGTACCCGTCCTA
 
. : . : . : . : . : . :
rJMSF009G10+ TTAAATAC
rJMFF048K18+ TTAAATACAGTTTTACACTTCTTGTTAACTGCTCACAAAACAATCAAAACGTTACGC
rJMFF030F15+ TTAAATACAGTTTTACACTTCTTGTTAACTGCTCACAAAACAATCNAAACGTTACGCAAA
                      ____________________________________________________________
consensus TTAAATACAGTTTTACACTTCTTGTTAACTGCTCACAAAACAATCAAAACGTTACGCAAA