Contig 001131:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF029N17Sequence536010792 (6)ref|XP_009591425.1|1e-90PREDICTED: AP-4 complex subunit mu [Nicotiana tomentosiformis]742001131 (5)ref|XP_009591425.1|7e-102PREDICTED: AP-4 complex subunit mu [Nicotiana tomentosiformis]
JMSF019C23Sequence239010792 (6)ref|XP_011074223.1|2e-21PREDICTED: AP-4 complex subunit mu [Sesamum indicum]788001131 (5)ref|XP_009591425.1|5e-115PREDICTED: AP-4 complex subunit mu [Nicotiana tomentosiformis]
JMSF020L02Sequence677010792 (6)ref|XP_009591425.1|3e-123PREDICTED: AP-4 complex subunit mu [Nicotiana tomentosiformis]765001131 (5)ref|XP_009591425.1|2e-116PREDICTED: AP-4 complex subunit mu [Nicotiana tomentosiformis]
JMSF034D16Sequence699010792 (6)ref|XP_009591425.1|1e-128PREDICTED: AP-4 complex subunit mu [Nicotiana tomentosiformis]741001131 (5)ref|XP_009591425.1|6e-110PREDICTED: AP-4 complex subunit mu [Nicotiana tomentosiformis]
JMSF049H07Sequence694010792 (6)ref|XP_009591425.1|2e-127PREDICTED: AP-4 complex subunit mu [Nicotiana tomentosiformis]734001131 (5)ref|XP_009591425.1|1e-108PREDICTED: AP-4 complex subunit mu [Nicotiana tomentosiformis]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF020L02+ TTTGAAATGGACAGA
rJMSF019C23+ TTCATCNTGATAGTTTGAAATGGACAGA
                      ____________________________________________________________
consensus TTCATCNTGATAGTTTGAAATGGACAGA
 
. : . : . : . : . : . :
rJMSF020L02+ ACATTGACTCTAGTTCCCCCAGATGGTGAATTTCCTGTAATGAATTACCGTATAACCCAG
rJMSF034D16+ TCCCCCAGATGGTGAATTTCCTGTAATGAATTACCGTATAACCCAG
rJMSF049H07+ TCCCCCAGATGGTGAATTTCCTGTAATGAATTACCGTATAACCCAG
rJMSF019C23+ ACATTGACTCTAGTTCCCCCAGATGGTGAATTTCCTGTAATGAATTACCGTATAACCCAG
rJMFF029N17+ TAATGAATTACCGTATAACCCAG
                      ____________________________________________________________
consensus ACATTGACTCTAGTTCCCCCAGATGGTGAATTTCCTGTAATGAATTACCGTATAACCCAG
 
. : . : . : . : . : . :
rJMSF020L02+ GAGTTCAAGCCTCCCTTTCGAATTAATGCTTTGATTGAAGAAGCTGGATCGCTCAAGGCT
rJMSF034D16+ GAGTTCAAGCCTCCCTTTCGAATTAATGCTTTGATTGAAGAAGCTGGATCGCTCAAGGCT
rJMSF049H07+ GAGTTCAAGCCTCCCTTTCGAATTAATGCTTTGATTGAAGAAGCTGGATCGCTCAAGGCT
rJMSF019C23+ GAGTTCAAGCCTCCCTTTCGAATTAATGCTTTGATTGAAGAAGCTGGATCGCTCAAGGCT
rJMFF029N17+ GAGTTCAAGCNTCCCTTTCGAATTAATGCTTTGATTGAAGAAGCTGGATCGCTCAAGGCT
                      ____________________________________________________________
consensus GAGTTCAAGCCTCCCTTTCGAATTAATGCTTTGATTGAAGAAGCTGGATCGCTCAAGGCT
 
. : . : . : . : . : . :
rJMSF020L02+ GAAGTCATTTTGAAGATTCGAGCTGAGTTTCCATCAAACATAACTGCAAATACTGTTGCA
rJMSF034D16+ GAAGTCATTTTGAAGATTCGAGCTGAGTTTCCATCAAACATAACTGCAAATACTGTTGCA
rJMSF049H07+ GAAGTCATTTTGAAGATTCGAGCTGAGTTTCCATCAAACATAACTGCAAATACTGTTGCA
rJMSF019C23+ GAAGTCATTTTGAAGATTCGAGCTGAGTTTCCATCAAACATAACTGCAAATACTGTTGCA
rJMFF029N17+ GAAGTCATTTTGAAGATTCGAGCTGAGTTTCCATCAAACATAACTGCAAATACTGTTGCA
                      ____________________________________________________________
consensus GAAGTCATTTTGAAGATTCGAGCTGAGTTTCCATCAAACATAACTGCAAATACTGTTGCA
 
. : . : . : . : . : . :
rJMSF020L02+ GTGCAGATGCCAGTTCCAACATACACATCCAGGGTTAATTTTGAGCTGGAACCTGGAGCA
rJMSF034D16+ GTGCAGATGCCAGTTCCAACATACACATCCAGGGTTAATTTTGAGCTGGAACCTGGAGCA
rJMSF049H07+ GTGCAGATGCCAGTTCCAACATACACATCCAGGGTTAATTTTGAGCTGGAACCTGGAGCA
rJMSF019C23+ GTGCAGATGCCAGTTCCAACATACACATCCAGGGTTAATTTTGAGCTGGAACCTGGAGCA
rJMFF029N17+ GTGCAGATGCCAGTTCCAACATACACATCCAGGGTTAATTTTGAGCTGGAACCTGGAGCA
                      ____________________________________________________________
consensus GTGCAGATGCCAGTTCCAACATACACATCCAGGGTTAATTTTGAGCTGGAACCTGGAGCA
 
. : . : . : . : . : . :
rJMSF020L02+ GCTGGGCAAACAACTGATTTCAAAGAATCCAATAAGAGGCTGGAGTGGAGTCTGAAGAAG
rJMSF034D16+ GCTGGGCAAACAACTGATTTCAAAGAATCCAATAAGAGGCTGGAGTGGAGTCTGAAGAAG
rJMSF049H07+ GCTGGGCAAACAACTGATTTCAAAGAATCCAATAAGAGGCTGTAGTGGAGTCTGAAGAAG
rJMSF019C23+ GCTGGGCAAACAACTGATTTCAAAGAATCCAATAAGAGGCTGTAGTGGAGTCTGAAGAAG
rJMFF029N17+ GCTGGGCAAACAACTGATTTCAAAGAATCCAATAAGAGGCTGGAGTGGAGTCTGAAGAAG
                      ____________________________________________________________
consensus GCTGGGCAAACAACTGATTTCAAAGAATCCAATAAGAGGCTGGAGTGGAGTCTGAAGAAG
 
. : . : . : . : . : . :
rJMSF020L02+ ATTGTGGGTGGATCTGAATGTACACTGCGTGCCAAGCTAACCTTTTCGCAAGAGTCACAT
rJMSF034D16+ ATTGTGGGTGGATCTGAATGTACACTGCGTGCCAAGCTAACCTTTTCGCAAGAGTCACAT
rJMSF049H07+ ATTGTGGGTGGATCTGAATGTACACTGCGTGCCAAGCTAACCTTTTCGCAAGAGTCACAT
rJMSF019C23+ ATTGTGGGTGGATCTGAATGTACACTGCGTGCCAAGCTAACCTTTTCGCAAGAGTCACAT
rJMFF029N17+ ATTGTGGGTGGATCTGAATGTACACTGCGTGCCAAGCTAACCTTTTCGCAAGAGTCACAT
                      ____________________________________________________________
consensus ATTGTGGGTGGATCTGAATGTACACTGCGTGCCAAGCTAACCTTTTCGCAAGAGTCACAT
 
. : . : . : . : . : . :
rJMSF020L02+ GGAAATATCACAAAGGAAGCTGGGCCTGTTAGCATGACCTTCACCATACCCATGTACAAT
rJMSF034D16+ GGAAATATCACAAAGGAAGCTGGGCCTGTTAGCATGACCTTCACCATACCCATGTACAAT
rJMSF049H07+ GGAAATATCACAAAGGAAGCTGGGCCTGTTAGCATGACCTTCACCATACCCATGTACAAT
rJMSF019C23+ GGAAATATCACAAAGGAAGCTGGGCCTGTTAGCATGACCTTCACCATACCCATGTACAAT
rJMFF029N17+ GGAAATATCACAAAGGAAGCTGGGCCTGTTAGCATGACCTTCACCATACCCATGTACAAT
                      ____________________________________________________________
consensus GGAAATATCACAAAGGAAGCTGGGCCTGTTAGCATGACCTTCACCATACCCATGTACAAT
 
. : . : . : . : . : . :
rJMSF020L02+ CCCTCAAGGCTTCAGGTAAAGTATTTGCAGATTGCAAAGACGTCCAAAAGTTACAATCCC
rJMSF034D16+ CCCTCAAGGCTTCAGGTAAAGTATTTGCAGATTGCAAAGACGTCCAAAAGTTACAATCCC
rJMSF049H07+ CCCTCAAGGCTTCAGGTAAAGTATTTGCAGATTGCAAAGACGTCCAAAAGTTACAATCCC
rJMSF019C23+ CCCTCAAGGCTTCAGGTAAAGTATTTGCAGATTGCAAAGACGTCCAAAAGTTACAATCCC
rJMFF029N17+ CCCTCAAGGCTTCAGGTAAAGTATTTGCAGATTGCAAAGACGTCCAAAAGTTACAATCCC
                      ____________________________________________________________
consensus CCCTCAAGGCTTCAGGTAAAGTATTTGCAGATTGCAAAGACGTCCAAAAGTTACAATCCC
 
. : . : . : . : . : . :
rJMSF020L02+ TATCGGTGGGTTCGATACGTAACTCAGACCAATTCATATGTGGCTCGTATATGATAAATA
rJMSF034D16+ TATCGGTGGGTTCGATACGTAACTCAGACCAATTCATATGTGGCTCGTATATGATAAATA
rJMSF049H07+ TATCGGTGGGTTCGATACGTAACTCAGACCAATTCATATGTGGCTCGTATATGATAAATA
rJMSF019C23+ TATCGGTGGGTTCGATACGTAACTCAGACCAATTCATATGTGGCTCGTATATGATAAATA
rJMFF029N17+ TATCGGTGGGTTCGATACGTAACTCAGACCAATTCATATGTGGCTCGTATATGATAAATA
                      ____________________________________________________________
consensus TATCGGTGGGTTCGATACGTAACTCAGACCAATTCATATGTGGCTCGTATATGATAAATA
 
. : . : . : . : . : . :
rJMSF020L02+ AATTAAGATGCCTTCCCAGTCTCAACAGTGTGAATTTTGAAAGGCTAGATTTTATTCGCA
rJMSF034D16+ AATTAAGATGCCTTCCCAGTCTCAACAGTGTGAATTTTGAAAGGCTAGATTTTATTCGCA
rJMSF049H07+ AATTAAGATGCCTTCCCAGTCTCAACAGTGTGAATTTTGAAAGGCTAGATTTTATTCGCA
rJMSF019C23+ AATTAAGATGCCTTCCCAGTCTCAACAGTGTGAATTTTGAAAGGCTAGATTTTATTCGCA
rJMFF029N17+ AATTAAGATGCCTTCCCAGTCTCAACAGTGTGAATTTTGAAAGGCTAGATTTTATTCGCA
                      ____________________________________________________________
consensus AATTAAGATGCCTTCCCAGTCTCAACAGTGTGAATTTTGAAAGGCTAGATTTTATTCGCA
 
. : . : . : . : . : . :
rJMSF020L02+ CTCTTTGTTATTTTCTTGTTGTGTCTTAGGGATGAGGTGCTTGTAACTCAATTTCTAAAC
rJMSF034D16+ CTCTTTGTTATTTTCTTGTTGTGTCTTAGGGATGAGGTGCTTGTAACTCAATTTCTAAAC
rJMSF049H07+ CTCTTTGTTATTTTC-TGTTGTGTCTTAAGGATGAGGTGCTTGTAACTCAATTTCTAAAC
rJMSF019C23+ CTCTTTGTTATTTTC-TGTTGTGTCTTAAGGATGAGGTGCTTGTAACTCAATTTCTAAAC
rJMFF029N17+ CTCTTTGTTATTTTCTTGTTGTGTCTTAGGGATGAGGTGCTTGTAACTCAATTTCTAAAC
                      ____________________________________________________________
consensus CTCTTTGTTATTTTCTTGTTGTGTCTTAGGGATGAGGTGCTTGTAACTCAATTTCTAAAC
 
. : . : . : . : . : . :
rJMSF020L02+ CGGGAAGTCATTCGTTTTCTGGAGAGTCTCAATAGTGATTCCCTGTAGTTCACAAATTTG
rJMSF034D16+ CGGGAAGTCATTCGTTTTCTGGAGAGTCTCAATAGTGATTCCCTGTAGTTCACAAATTTG
rJMSF049H07+ CGGGAAGTCATTCGTTTTCTGGAGAGTCTCAATAGTGATTCCCTGTAGTTCACAAATTTG
rJMSF019C23+ CGGGAAGTCATTCGTTTTCTGGAGAGTCTCAATAGTGATTCCCTGTAGTTCACAAATTTG
rJMFF029N17+ CGGGAAGTCATTCGTTTTCTGGAGAGTCTCAATAGTGATTCCCTGTAGTTCACAAATTTG
                      ____________________________________________________________
consensus CGGGAAGTCATTCGTTTTCTGGAGAGTCTCAATAGTGATTCCCTGTAGTTCACAAATTTG
 
. : . : . : . : . : . :
rJMSF020L02+ GTGTGTTTTAACTAC
rJMSF034D16+ GTGTGTTTTAACTA-CTGTAATAGCCTCTT
rJMSF049H07+ GTGTGTTTTAACTAC
rJMSF019C23+ GTGTGTTTTAACTACCTGTAATAGCCTCTTTATTTT
rJMFF029N17+ GTGTGTTTTAACTA-CTGTAATAGCCTCTTTATTTTTGCATATAATTGAGGAAAAAGAAA
                      ____________________________________________________________
consensus GTGTGTTTTAACTACCTGTAATAGCCTCTTTATTTTTGCATATAATTGAGGAAAAAGAAA