clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF029N17 | Sequence | 536 | 010792 (6) | ref|XP_009591425.1| | 1e-90 | PREDICTED: AP-4 complex subunit mu [Nicotiana tomentosiformis] | 742 | 001131 (5) | ref|XP_009591425.1| | 7e-102 | PREDICTED: AP-4 complex subunit mu [Nicotiana tomentosiformis] |
JMSF019C23 | Sequence | 239 | 010792 (6) | ref|XP_011074223.1| | 2e-21 | PREDICTED: AP-4 complex subunit mu [Sesamum indicum] | 788 | 001131 (5) | ref|XP_009591425.1| | 5e-115 | PREDICTED: AP-4 complex subunit mu [Nicotiana tomentosiformis] |
JMSF020L02 | Sequence | 677 | 010792 (6) | ref|XP_009591425.1| | 3e-123 | PREDICTED: AP-4 complex subunit mu [Nicotiana tomentosiformis] | 765 | 001131 (5) | ref|XP_009591425.1| | 2e-116 | PREDICTED: AP-4 complex subunit mu [Nicotiana tomentosiformis] |
JMSF034D16 | Sequence | 699 | 010792 (6) | ref|XP_009591425.1| | 1e-128 | PREDICTED: AP-4 complex subunit mu [Nicotiana tomentosiformis] | 741 | 001131 (5) | ref|XP_009591425.1| | 6e-110 | PREDICTED: AP-4 complex subunit mu [Nicotiana tomentosiformis] |
JMSF049H07 | Sequence | 694 | 010792 (6) | ref|XP_009591425.1| | 2e-127 | PREDICTED: AP-4 complex subunit mu [Nicotiana tomentosiformis] | 734 | 001131 (5) | ref|XP_009591425.1| | 1e-108 | PREDICTED: AP-4 complex subunit mu [Nicotiana tomentosiformis] |
This contig is upended
. : . : . : . : . : . :
rJMSF020L02+ TTTGAAATGGACAGA
rJMSF019C23+ TTCATCNTGATAGTTTGAAATGGACAGA
____________________________________________________________
consensus TTCATCNTGATAGTTTGAAATGGACAGA
. : . : . : . : . : . :
rJMSF020L02+ ACATTGACTCTAGTTCCCCCAGATGGTGAATTTCCTGTAATGAATTACCGTATAACCCAG
rJMSF034D16+ TCCCCCAGATGGTGAATTTCCTGTAATGAATTACCGTATAACCCAG
rJMSF049H07+ TCCCCCAGATGGTGAATTTCCTGTAATGAATTACCGTATAACCCAG
rJMSF019C23+ ACATTGACTCTAGTTCCCCCAGATGGTGAATTTCCTGTAATGAATTACCGTATAACCCAG
rJMFF029N17+ TAATGAATTACCGTATAACCCAG
____________________________________________________________
consensus ACATTGACTCTAGTTCCCCCAGATGGTGAATTTCCTGTAATGAATTACCGTATAACCCAG
. : . : . : . : . : . :
rJMSF020L02+ GAGTTCAAGCCTCCCTTTCGAATTAATGCTTTGATTGAAGAAGCTGGATCGCTCAAGGCT
rJMSF034D16+ GAGTTCAAGCCTCCCTTTCGAATTAATGCTTTGATTGAAGAAGCTGGATCGCTCAAGGCT
rJMSF049H07+ GAGTTCAAGCCTCCCTTTCGAATTAATGCTTTGATTGAAGAAGCTGGATCGCTCAAGGCT
rJMSF019C23+ GAGTTCAAGCCTCCCTTTCGAATTAATGCTTTGATTGAAGAAGCTGGATCGCTCAAGGCT
rJMFF029N17+ GAGTTCAAGCNTCCCTTTCGAATTAATGCTTTGATTGAAGAAGCTGGATCGCTCAAGGCT
____________________________________________________________
consensus GAGTTCAAGCCTCCCTTTCGAATTAATGCTTTGATTGAAGAAGCTGGATCGCTCAAGGCT
. : . : . : . : . : . :
rJMSF020L02+ GAAGTCATTTTGAAGATTCGAGCTGAGTTTCCATCAAACATAACTGCAAATACTGTTGCA
rJMSF034D16+ GAAGTCATTTTGAAGATTCGAGCTGAGTTTCCATCAAACATAACTGCAAATACTGTTGCA
rJMSF049H07+ GAAGTCATTTTGAAGATTCGAGCTGAGTTTCCATCAAACATAACTGCAAATACTGTTGCA
rJMSF019C23+ GAAGTCATTTTGAAGATTCGAGCTGAGTTTCCATCAAACATAACTGCAAATACTGTTGCA
rJMFF029N17+ GAAGTCATTTTGAAGATTCGAGCTGAGTTTCCATCAAACATAACTGCAAATACTGTTGCA
____________________________________________________________
consensus GAAGTCATTTTGAAGATTCGAGCTGAGTTTCCATCAAACATAACTGCAAATACTGTTGCA
. : . : . : . : . : . :
rJMSF020L02+ GTGCAGATGCCAGTTCCAACATACACATCCAGGGTTAATTTTGAGCTGGAACCTGGAGCA
rJMSF034D16+ GTGCAGATGCCAGTTCCAACATACACATCCAGGGTTAATTTTGAGCTGGAACCTGGAGCA
rJMSF049H07+ GTGCAGATGCCAGTTCCAACATACACATCCAGGGTTAATTTTGAGCTGGAACCTGGAGCA
rJMSF019C23+ GTGCAGATGCCAGTTCCAACATACACATCCAGGGTTAATTTTGAGCTGGAACCTGGAGCA
rJMFF029N17+ GTGCAGATGCCAGTTCCAACATACACATCCAGGGTTAATTTTGAGCTGGAACCTGGAGCA
____________________________________________________________
consensus GTGCAGATGCCAGTTCCAACATACACATCCAGGGTTAATTTTGAGCTGGAACCTGGAGCA
. : . : . : . : . : . :
rJMSF020L02+ GCTGGGCAAACAACTGATTTCAAAGAATCCAATAAGAGGCTGGAGTGGAGTCTGAAGAAG
rJMSF034D16+ GCTGGGCAAACAACTGATTTCAAAGAATCCAATAAGAGGCTGGAGTGGAGTCTGAAGAAG
rJMSF049H07+ GCTGGGCAAACAACTGATTTCAAAGAATCCAATAAGAGGCTGTAGTGGAGTCTGAAGAAG
rJMSF019C23+ GCTGGGCAAACAACTGATTTCAAAGAATCCAATAAGAGGCTGTAGTGGAGTCTGAAGAAG
rJMFF029N17+ GCTGGGCAAACAACTGATTTCAAAGAATCCAATAAGAGGCTGGAGTGGAGTCTGAAGAAG
____________________________________________________________
consensus GCTGGGCAAACAACTGATTTCAAAGAATCCAATAAGAGGCTGGAGTGGAGTCTGAAGAAG
. : . : . : . : . : . :
rJMSF020L02+ ATTGTGGGTGGATCTGAATGTACACTGCGTGCCAAGCTAACCTTTTCGCAAGAGTCACAT
rJMSF034D16+ ATTGTGGGTGGATCTGAATGTACACTGCGTGCCAAGCTAACCTTTTCGCAAGAGTCACAT
rJMSF049H07+ ATTGTGGGTGGATCTGAATGTACACTGCGTGCCAAGCTAACCTTTTCGCAAGAGTCACAT
rJMSF019C23+ ATTGTGGGTGGATCTGAATGTACACTGCGTGCCAAGCTAACCTTTTCGCAAGAGTCACAT
rJMFF029N17+ ATTGTGGGTGGATCTGAATGTACACTGCGTGCCAAGCTAACCTTTTCGCAAGAGTCACAT
____________________________________________________________
consensus ATTGTGGGTGGATCTGAATGTACACTGCGTGCCAAGCTAACCTTTTCGCAAGAGTCACAT
. : . : . : . : . : . :
rJMSF020L02+ GGAAATATCACAAAGGAAGCTGGGCCTGTTAGCATGACCTTCACCATACCCATGTACAAT
rJMSF034D16+ GGAAATATCACAAAGGAAGCTGGGCCTGTTAGCATGACCTTCACCATACCCATGTACAAT
rJMSF049H07+ GGAAATATCACAAAGGAAGCTGGGCCTGTTAGCATGACCTTCACCATACCCATGTACAAT
rJMSF019C23+ GGAAATATCACAAAGGAAGCTGGGCCTGTTAGCATGACCTTCACCATACCCATGTACAAT
rJMFF029N17+ GGAAATATCACAAAGGAAGCTGGGCCTGTTAGCATGACCTTCACCATACCCATGTACAAT
____________________________________________________________
consensus GGAAATATCACAAAGGAAGCTGGGCCTGTTAGCATGACCTTCACCATACCCATGTACAAT
. : . : . : . : . : . :
rJMSF020L02+ CCCTCAAGGCTTCAGGTAAAGTATTTGCAGATTGCAAAGACGTCCAAAAGTTACAATCCC
rJMSF034D16+ CCCTCAAGGCTTCAGGTAAAGTATTTGCAGATTGCAAAGACGTCCAAAAGTTACAATCCC
rJMSF049H07+ CCCTCAAGGCTTCAGGTAAAGTATTTGCAGATTGCAAAGACGTCCAAAAGTTACAATCCC
rJMSF019C23+ CCCTCAAGGCTTCAGGTAAAGTATTTGCAGATTGCAAAGACGTCCAAAAGTTACAATCCC
rJMFF029N17+ CCCTCAAGGCTTCAGGTAAAGTATTTGCAGATTGCAAAGACGTCCAAAAGTTACAATCCC
____________________________________________________________
consensus CCCTCAAGGCTTCAGGTAAAGTATTTGCAGATTGCAAAGACGTCCAAAAGTTACAATCCC
. : . : . : . : . : . :
rJMSF020L02+ TATCGGTGGGTTCGATACGTAACTCAGACCAATTCATATGTGGCTCGTATATGATAAATA
rJMSF034D16+ TATCGGTGGGTTCGATACGTAACTCAGACCAATTCATATGTGGCTCGTATATGATAAATA
rJMSF049H07+ TATCGGTGGGTTCGATACGTAACTCAGACCAATTCATATGTGGCTCGTATATGATAAATA
rJMSF019C23+ TATCGGTGGGTTCGATACGTAACTCAGACCAATTCATATGTGGCTCGTATATGATAAATA
rJMFF029N17+ TATCGGTGGGTTCGATACGTAACTCAGACCAATTCATATGTGGCTCGTATATGATAAATA
____________________________________________________________
consensus TATCGGTGGGTTCGATACGTAACTCAGACCAATTCATATGTGGCTCGTATATGATAAATA
. : . : . : . : . : . :
rJMSF020L02+ AATTAAGATGCCTTCCCAGTCTCAACAGTGTGAATTTTGAAAGGCTAGATTTTATTCGCA
rJMSF034D16+ AATTAAGATGCCTTCCCAGTCTCAACAGTGTGAATTTTGAAAGGCTAGATTTTATTCGCA
rJMSF049H07+ AATTAAGATGCCTTCCCAGTCTCAACAGTGTGAATTTTGAAAGGCTAGATTTTATTCGCA
rJMSF019C23+ AATTAAGATGCCTTCCCAGTCTCAACAGTGTGAATTTTGAAAGGCTAGATTTTATTCGCA
rJMFF029N17+ AATTAAGATGCCTTCCCAGTCTCAACAGTGTGAATTTTGAAAGGCTAGATTTTATTCGCA
____________________________________________________________
consensus AATTAAGATGCCTTCCCAGTCTCAACAGTGTGAATTTTGAAAGGCTAGATTTTATTCGCA
. : . : . : . : . : . :
rJMSF020L02+ CTCTTTGTTATTTTCTTGTTGTGTCTTAGGGATGAGGTGCTTGTAACTCAATTTCTAAAC
rJMSF034D16+ CTCTTTGTTATTTTCTTGTTGTGTCTTAGGGATGAGGTGCTTGTAACTCAATTTCTAAAC
rJMSF049H07+ CTCTTTGTTATTTTC-TGTTGTGTCTTAAGGATGAGGTGCTTGTAACTCAATTTCTAAAC
rJMSF019C23+ CTCTTTGTTATTTTC-TGTTGTGTCTTAAGGATGAGGTGCTTGTAACTCAATTTCTAAAC
rJMFF029N17+ CTCTTTGTTATTTTCTTGTTGTGTCTTAGGGATGAGGTGCTTGTAACTCAATTTCTAAAC
____________________________________________________________
consensus CTCTTTGTTATTTTCTTGTTGTGTCTTAGGGATGAGGTGCTTGTAACTCAATTTCTAAAC
. : . : . : . : . : . :
rJMSF020L02+ CGGGAAGTCATTCGTTTTCTGGAGAGTCTCAATAGTGATTCCCTGTAGTTCACAAATTTG
rJMSF034D16+ CGGGAAGTCATTCGTTTTCTGGAGAGTCTCAATAGTGATTCCCTGTAGTTCACAAATTTG
rJMSF049H07+ CGGGAAGTCATTCGTTTTCTGGAGAGTCTCAATAGTGATTCCCTGTAGTTCACAAATTTG
rJMSF019C23+ CGGGAAGTCATTCGTTTTCTGGAGAGTCTCAATAGTGATTCCCTGTAGTTCACAAATTTG
rJMFF029N17+ CGGGAAGTCATTCGTTTTCTGGAGAGTCTCAATAGTGATTCCCTGTAGTTCACAAATTTG
____________________________________________________________
consensus CGGGAAGTCATTCGTTTTCTGGAGAGTCTCAATAGTGATTCCCTGTAGTTCACAAATTTG
. : . : . : . : . : . :
rJMSF020L02+ GTGTGTTTTAACTAC
rJMSF034D16+ GTGTGTTTTAACTA-CTGTAATAGCCTCTT
rJMSF049H07+ GTGTGTTTTAACTAC
rJMSF019C23+ GTGTGTTTTAACTACCTGTAATAGCCTCTTTATTTT
rJMFF029N17+ GTGTGTTTTAACTA-CTGTAATAGCCTCTTTATTTTTGCATATAATTGAGGAAAAAGAAA
____________________________________________________________
consensus GTGTGTTTTAACTACCTGTAATAGCCTCTTTATTTTTGCATATAATTGAGGAAAAAGAAA