Contig 001127:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF028M18Sequence456005204 (2)emb|CDP14399.1|4e-35unnamed protein product [Coffea canephora]659001127 (3)emb|CDP14399.1|4e-25unnamed protein product [Coffea canephora]
JMFF028N05Sequence111001127 (3)
JMSF035P05Sequence660005204 (2)gb|KJB12386.1|8e-82hypothetical protein B456_002G015600 [Gossypium raimondii]666001127 (3)emb|CDP14399.1|2e-29unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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rJMSF035P05+                                      TACTAATCGGGGGGAAGCCAAACGAGCCCAAC
                      ____________________________________________________________
consensus                                         TACTAATCGGGGGGAAGCCAAACGAGCCCAAC
 
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rJMSF035P05+          ATTGAGAAGCTAAAAGCGGCTGCTGCAGCTAGGAAGCAAGGAAAGCTGACTATAAGCGCC
rJMFF028M18+           TTGAGAAGCTAAAAGCGGCTGCTGCAGCTAGGAAGCAAGGAAAGCTGACTATAAGCGCC
                      ____________________________________________________________
consensus             ATTGAGAAGCTAAAAGCGGCTGCTGCAGCTAGGAAGCAAGGAAAGCTGACTATAAGCGCC
 
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rJMSF035P05+          ACTCACATTTATAGCGACGAGTATTGGATTCCATCAAACCTTGTGCTGCCAGAGCCAACA
rJMFF028M18+          ACTCACATTTATAGCGACGAGTATTGGATTCCATCAAACCTTGTGCTGCCAGAGCCAACA
                      ____________________________________________________________
consensus             ACTCACATTTATAGCGACGAGTATTGGATTCCATCAAACCTTGTGCTGCCAGAGCCAACA
 
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rJMSF035P05+          AAGATGAACACACCGGGCAGTAAAGCTTCACCACAGGCGTCTCGTTCTAAGAAACACAAG
rJMFF028M18+          AAGATGAACACACCGGGCAGTAAAGCTTCACCACAGGCGTCTCGTTCTAAGAAACACAAG
                      ____________________________________________________________
consensus             AAGATGAACACACCGGGCAGTAAAGCTTCACCACAGGCGTCTCGTTCTAAGAAACACAAG
 
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rJMSF035P05+          GAATCATCTGAGCGGGATTCCCTGGCCAAGAAGCATGATCGAAGTAGGCCATGGAGCGTG
rJMFF028M18+          GAATCATCTGAGCGGGATTCCCTGGCCAAGAAGCATTATCGAAGTAGGCCATGGAGCGTG
                      ____________________________________________________________
consensus             GAATCATCTGAGCGGGATTCCCTGGCCAAGAAGCATTATCGAAGTAGGCCATGGAGCGTG
 
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rJMSF035P05+          GCTATTCCTGTAGTAACCGGTACTATTGGAGCAGTTACAGTGTGGTTACAGATTCTCGGG
rJMFF028M18+          GCTATTCCTGTAGTAACCGGTACTATTGGAGCAGTTACAGTGTGGTTACAGATTCTCGGG
                      ____________________________________________________________
consensus             GCTATTCCTGTAGTAACCGGTACTATTGGAGCAGTTACAGTGTGGTTACAGATTCTCGGG
 
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rJMSF035P05+          GGCGGGGAAGAGCTACCCATACCCAGAGGACTAAACGAGCATTTAGGTGGTTCTTTAGCA
rJMFF028M18+          GGCGGGGAAGAGCTACCCATACCCAGAGGACTAAACGAGCATTTAGGTGGTTCTTTAGCA
                      ____________________________________________________________
consensus             GGCGGGGAAGAGCTACCCATACCCAGAGGACTAAACGAGCATTTAGGTGGTTCTTTAGCA
 
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rJMSF035P05+          TTGGATATTGTCAATAGCTCTGGGCTGCAGCTCATTCTAGCAGGTGTTACTTGGTATCTT
rJMFF028M18+          TTGGATATTGTCAATAGCTCTGGGCTGCAGCTCATTCTAGCAGGTGTTACTTGGTATCTT
                      ____________________________________________________________
consensus             TTGGATATTGTCAATAGCTCTGGGCTGCAGCTCATTCTAGCAGGTGTTACTTGGTATCTT
 
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rJMSF035P05+          ATTGGTTTATACCTTACTGAACTGGTAGAAGCCCTTCTAAGTGTAACAAAGGGGCATAGT
rJMFF028N05+                                 GGTAGAAGCCCTTTTAAGTGTANCAAAGGNGCANAGT
rJMFF028M18+          ATTGGTTTATACCTTACTGAACTGGTAGAAGCCCTTCTAAGTGTAACAAAGGGGCATAGT
                      ____________________________________________________________
consensus             ATTGGTTTATACCTTACTGAACTGGTAGAAGCCCTTCTAAGTGTAACAAAGGGGCATAGT
 
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rJMSF035P05+          AAATAGTGCATATATATATGAGAGGAAAGTTATACATTATTTATCCCTGTCCTCAGGTGT
rJMFF028N05+          AAATAGTGCATATATATATGAGAGGAAAGCTATACATTATNTATNCCTGTCCTCAGGTGT
rJMFF028M18+          AAATAGTGCATATATATATGAGAGGAAAGTTATACATTATTTATCCCTGTCCTCAGGTGT
                      ____________________________________________________________
consensus             AAATAGTGCATATATATATGAGAGGAAAGTTATACATTATTTATCCCTGTCCTCAGGTGT
 
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rJMSF035P05+          TTAAATAAATATTTAGGGTACGTGACAAACTCTTGTAAGCATGTATGTTGTATCTTGATA
rJMFF028N05+          ATAAATAAATATTT                                              
rJMFF028M18+          TTAAATAAATATTTAGGGTACGTGACAAACTCTTGTAAGCATGTATGTTGTATCTTGATA
                      ____________________________________________________________
consensus             TTAAATAAATATTTAGGGTACGTGACAAACTCTTGTAAGCATGTATGTTGTATCTTGATA
 
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rJMSF035P05+          GAAATCTGTATCTAGTATATATAGAAAAAATATG                          
rJMFF028M18+          GAAATCTGTATCTAGTATATATAGAAAAAATATGAAAAGATTTGCTATCTCAATACAAAT
                      ____________________________________________________________
consensus             GAAATCTGTATCTAGTATATATAGAAAAAATATGAAAAGATTTGCTATCTCAATACAAAT