Contig 001124:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF017J16Sequence639000575 (7)ref|XP_009762245.1|1e-102PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, c753001124 (6)ref|XP_009759585.1|4e-72PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, c
JMFF027A10Sequence617000575 (7)ref|XP_009762245.1|2e-103PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, c734001124 (6)ref|XP_009759585.1|4e-86PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, c
JMFF039D21Sequence484000575 (7)ref|XP_009762245.1|4e-74PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, c632001124 (6)ref|XP_009759585.1|1e-72PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, c
JMSF025N24Sequence667000575 (7)ref|XP_010320594.1|2e-110PREDICTED: dehydroquinate dehydratase/shikimate:NADP oxidoreductase isoform X2 730001124 (6)ref|XP_009759585.1|3e-72PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, c
JMSF043P04Sequence712000575 (7)ref|XP_010320594.1|8e-124PREDICTED: dehydroquinate dehydratase/shikimate:NADP oxidoreductase isoform X2 483001124 (6)ref|XP_009759585.1|2e-66PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, c
JMSF048N15Sequence719000575 (7)ref|XP_010320594.1|3e-122PREDICTED: dehydroquinate dehydratase/shikimate:NADP oxidoreductase isoform X2 508001124 (6)ref|XP_011071496.1|5e-71PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, c

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF025N24+ GGATGGCCTGCGAGGTTTATCATCTACCACC
rJMFF017J16+ TTGAGGATGNCCTGCGAGGTTTATCATCTACCACN
                      ____________________________________________________________
consensus TTGAGGATGGCCTGCGAGGTTTATCATCTACCACC
 
. : . : . : . : . : . :
rJMSF025N24+ TAAAAAGTGAGGTCCTCAATAGATCTTAGAGTTTGATGTTTGAATTTCCAACATCTTTTC
rJMFF017J16+ TAAAAAGTGAGGTCCTCAATAGATCTTAGAGTTTGATGTTTGAATTTCCAACATCTTTTC
                      ____________________________________________________________
consensus TAAAAAGTGAGGTCCTCAATAGATCTTAGAGTTTGATGTTTGAATTTCCAACATCTTTTC
 
. : . : . : . : . : . :
rJMSF025N24+ AGGTTTGCATCATACCCCAGTTGGCTCTTCACCCTTGGCTGGTAAATTATTTGTGGTAAT
rJMFF017J16+ AGGTTTGCATCATACCCCAGTTGGCTCTTCACCCTTGGCTGGTAAATTATTTGTGGTAAT
rJMFF039D21+ CCCCAGTTGGCTCTTCACCCTTGGCTGGTAAATTATTTGTGGTAAT
rJMSF048N15+ AGGTTTGCATCATACCCCAGTTGGCTCTTCACCCTTGGCTGGTAAATTATTTGTGGTAAT
rJMSF043P04+ CCCCAGTTGGCTGTTCACCCTTGNNTGGTAAATTATNTGTGGTAAT
rJMFF027A10+ AGGTTTGCATCATACCCCAGTTGGCTCTTCACCCTTGGCTGGTAAATTATTTGTGGTAAT
                      ____________________________________________________________
consensus AGGTTTGCATCATACCCCAGTTGGCTCTTCACCCTTGGCTGGTAAATTATTTGTGGTAAT
 
. : . : . : . : . : . :
rJMSF025N24+ TGGTGCTGGTGGTGCTGGAAAGGCGCTGGCTTATGGTGCAAAAGAAAAAGGAGCTAGGGT
rJMFF017J16+ TGGTGCTGGTGGTGCTGGAAAGGCGCTGGCTTATGGTGCAAAAGAAAAAGGAGCTAGGGT
rJMFF039D21+ TGGTGCTGGTGGTGCTGGAAAGGCGCTGGCTTATGGTGCAAAAGAAAAAGGAGCTAGGGT
rJMSF048N15+ TGGTGCTGGTGGTGCTGGAAAGGCGCTGGCTTATGGTGCAAAAGAAAAAGGAGCTAGGGT
rJMSF043P04+ TGGTGCTGGTGGTGCTGGAAAGGCGCTGGCTTATGGTGCAAAAGAAAAAGGAGCTAGGGT
rJMFF027A10+ TGGTGCTGGTGGTGCTGGAAAGGCGCTGGCTTATGGTGCAAAAGAAAAAGGAGCTAGGGT
                      ____________________________________________________________
consensus TGGTGCTGGTGGTGCTGGAAAGGCGCTGGCTTATGGTGCAAAAGAAAAAGGAGCTAGGGT
 
. : . : . : . : . : . :
rJMSF025N24+ GGTGATTGCTAACCGTACATATGGTCGAGCCAAAGAGCTGGCTGATTCAATTGGAGCACA
rJMFF017J16+ GGTGATTGCTAACCGTACATATGGTCGAGCCAAAGAGCTGGCTGATTCAATTGGAGCACA
rJMFF039D21+ GGTGATTGCTAACCGTACATATGGTCGAGCCAAAGAGCTGGCTGATTCAATTGGAGCACA
rJMSF048N15+ GGTGATTGCTAACCGTACATATGGTCGAGCCAAAGAGCTGGCTGATTCAATTGGAGCACA
rJMSF043P04+ GGTGATTGCTAACCGTACATATGGTCGAGCCAAAGAGCTGGCTGATTCAATTGGAGCACA
rJMFF027A10+ GGTGATTGCTAACCGTACATATGGTCGAGCCAAAGAGCTGGCTGATTCAATTGGAGCACA
                      ____________________________________________________________
consensus GGTGATTGCTAACCGTACATATGGTCGAGCCAAAGAGCTGGCTGATTCAATTGGAGCACA
 
. : . : . : . : . : . :
rJMSF025N24+ GGCTTTGTCTCTTGCCGAGCTTAATAGTTTCCATCCAGAAAAAGGCATGATTCTTGCAAA
rJMFF017J16+ GGCTTTGTCTCTTGCCGAGCTTAATAGTTTCCATCCAGAAAAAGGCATGATTCTTGCAAA
rJMFF039D21+ GGCTTTGTCTCTTGCCGAGCTTAATAGTTTCCATCCAGAAAAAGGCATGATTCTTGCAAA
rJMSF048N15+ GGCTTTGTCTCTTGCCGAGCTTAATAGTTTCCATCCAGAAAAAGGCATGATTCTTGCAAA
rJMSF043P04+ GGCTTTGTCTCTTGCCGAGCTTAATAGTTTCCATCCAGAAAAAGGCATGATTCTTGCAAA
rJMFF027A10+ GGCTTTGTCTCTTGCCGAGCTTAATAGTTTCCATCCAGAAAAAGGCATGATTCTTGCAAA
                      ____________________________________________________________
consensus GGCTTTGTCTCTTGCCGAGCTTAATAGTTTCCATCCAGAAAAAGGCATGATTCTTGCAAA
 
. : . : . : . : . : . :
rJMSF025N24+ CACCACCTCCATCGGGATGCAACCAAAAGTTGATGAGACACCAGTTGCTAAGGAAGCTTT
rJMFF017J16+ CACCACCTCCATCGGGATGCAACCAAAAGTTGATGAGACACCAGTTGCTAAGGAAGCTTT
rJMFF039D21+ CACCACCTCCATCGGGATGCAACCAAAAGTTGATGAGACACCAGTTGCTAAGGAAGCTTT
rJMSF048N15+ CACCACCTCCATCGGGATGCAACCAAAAGTTGATGAGACACCAGTTGCTAAGGAAGCTTT
rJMSF043P04+ CACCACCTCCATCGGGATGCAACCAAAAGTTGATGAGACACCAGTTGCTAAGGAAGCTTT
rJMFF027A10+ CACCACCTCCATCGGGATGCAACCAAAAGTTGATGAGACACCAGTTGCTAAGGAAGCTTT
                      ____________________________________________________________
consensus CACCACCTCCATCGGGATGCAACCAAAAGTTGATGAGACACCAGTTGCTAAGGAAGCTTT
 
. : . : . : . : . : . :
rJMSF025N24+ GCAATACTATTCCCTTGTCTTCGATGCCGTCTATACCCCAAAGATAACTAGATTGTTGAG
rJMFF017J16+ GCAATACTATTCCCTTGTCTTCGATGCCGTCTATACCCCAAAGATAACTAGATTGTTGAG
rJMFF039D21+ GCAATACTATTCCCTTGTCTTCGATGCCGTCTATACCCCAAAGATAACTAGATTGTTGAG
rJMSF048N15+ GCAATACTATTCCCTTGTCTTCGATGCCGTCTATACCCCAAAGATAACTAGATTGTTGAG
rJMSF043P04+ GCAATACTATTCCCTTGTCTTCGATGCCGTCTATACCCCAAAGATAACTAGATTGTTGAG
rJMFF027A10+ GCAATACTATTCCCTTGTCTTCGATGCCGTCTATACCCCAAAGATAACTAGATTGTTGAG
                      ____________________________________________________________
consensus GCAATACTATTCCCTTGTCTTCGATGCCGTCTATACCCCAAAGATAACTAGATTGTTGAG
 
. : . : . : . : . : . :
rJMSF025N24+ AGAGGCCGAAGAATGTGGATCGAAAATTGTTACTGGAGTAGAAATGTTCATTGGGCAAGC
rJMFF017J16+ AGAGGCCGAAGAATGTGGATCGAAAATTGTTACTGGAGTAGAAATGTTCATTGGGCAAGC
rJMFF039D21+ AGAGGCCGAAGAATGTGGATCGAAAATTGTTACTGGAGTAGAAATGTTCATTGGGCAAGC
rJMSF048N15+ AGAGGCCGAAGAATGTGGATCGAAAATTGTTACTGGAGTAGAAATGTTCATTGGGCAAGC
rJMSF043P04+ AGAGGCCGAAGAATGTGGATCGAAAATTGTTACTGGAGTAGAAATGTTCATTGGGCAAGC
rJMFF027A10+ AGAGGCCGAAGAATGTGGATCGAAAATTGTTACTGGAGTAGAAATGTTCATTGGGCAAGC
                      ____________________________________________________________
consensus AGAGGCCGAAGAATGTGGATCGAAAATTGTTACTGGAGTAGAAATGTTCATTGGGCAAGC
 
. : . : . : . : . : . :
rJMSF025N24+ ATATGAACAATATGAAAGGTTCACAGGATTGCCTGCTCCAAAGGAACTATTTAAAAGTAT
rJMFF017J16+ ATATGAACAATATGAAAGGTTCACAGGATTGCCTGCTCCAAAGGAACTATTTAAAAGTAT
rJMFF039D21+ ATATGAACAATATGAAAGGTTCACAGGATTGCCTGCTCCAAAGGAACTATTTAAAAGTAT
rJMSF048N15+ ATATGAACAATATGAAAGGTTCACAGGATTGCCTGCTCCAAAGGAACTATTTNAAAGTAT
rJMSF043P04+ ATATGAACAATATGAAAGGTTCACAGGATTGCCTGCTCCAAAGGAA
rJMFF027A10+ ATATGAACAATATGAAAGGTTCACAGGATTGCCTGCTCCAAAGGAACTATTTAAAAGTAT
                      ____________________________________________________________
consensus ATATGAACAATATGAAAGGTTCACAGGATTGCCTGCTCCAAAGGAACTATTTAAAAGTAT
 
. : . : . : . : . : . :
rJMSF025N24+ CATGGCAGCATATTGAAAGCAAGCGTTTGCCGGCTTCACTACCATGTCCTCACTAATCCC
rJMFF017J16+ CATGGCAGCATATTGAAAGCAAGCGTTTGCCGGCTTCACTACCATGTCCTCACTAATCCC
rJMFF039D21+ CATGGCAGCATATTGAAAGCAAGCGTTTGCCGGCTTCACTACCATGTCCTCACTAATCCC
rJMSF048N15+ CACGGCAGCAT
rJMFF027A10+ CATGGCAGCATATTGAAAGCAAGCGTTTGCCGGCTTCACTACCATGTCCTCACTAATCCC
                      ____________________________________________________________
consensus CATGGCAGCATATTGAAAGCAAGCGTTTGCCGGCTTCACTACCATGTCCTCACTAATCCC
 
. : . : . : . : . : . :
rJMSF025N24+ ATTTATTTTTGTATTCCTTGATAATCATGCTATGTTCTTAGTCTATATTTTCTAGTGTCG
rJMFF017J16+ ATTTATTTTTGTATTCCTTGATAATCATGCTATGTTCTTAGTCTATATTTTCTAGTGTCG
rJMFF039D21+ ATTTATTTTTGTATTCCTTGATAATCATGCTATGTTCTTAGTCTATATTTTCTAGTGTCG
rJMFF027A10+ ATTTATTTTTGTATTCCTTGATAATCATGCTATGTTCTTAGTCTATATTTTCTAGTGTCG
                      ____________________________________________________________
consensus ATTTATTTTTGTATTCCTTGATAATCATGCTATGTTCTTAGTCTATATTTTCTAGTGTCG
 
. : . : . : . : . : . :
rJMSF025N24+ CGTCACTTGTACCCCAC
rJMFF017J16+ CGTCACTTGTACCCCACATGTAAACTGTTCGCGTCTGTTAGGACATGTCTTATGAAAC
rJMFF039D21+ CGTCACTTGTACCCCACATGTAAACTGTTTGCGTCTGTTAGGACAT
rJMFF027A10+ CGTCACTTGTACCCCACATGTAAACTGTTTGCGTCTGTTAGGACATGTCTTATGAAACTT
                      ____________________________________________________________
consensus CGTCACTTGTACCCCACATGTAAACTGTTTGCGTCTGTTAGGACATGTCTTATGAAACTT