Contig 001118:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF003N05Sequence587001118 (6)ref|XP_009622343.1|310PREDICTED: triosephosphate isomerase, cytosolic [Nicotiana tomentosiformis]744001118 (6)ref|XP_008223629.1|327PREDICTED: triosephosphate isomerase, cytosolic [Prunus mume]
JMFF025M06Sequence568001118 (6)ref|XP_009622343.1|296PREDICTED: triosephosphate isomerase, cytosolic [Nicotiana tomentosiformis]743001118 (6)ref|NP_001275435.1|4e-120triosphosphate isomerase-like protein [Solanum tuberosum] gb|ABA46792.1| triosph
JMSF009B17Sequence437001118 (6)ref|XP_008223629.1|182PREDICTED: triosephosphate isomerase, cytosolic [Prunus mume]
JMSF030A18Sequence686001118 (6)ref|NP_001275435.1|7e-87triosphosphate isomerase-like protein [Solanum tuberosum] gb|ABA46792.1| triosph765024605ref|XP_010264447.1|152PREDICTED: triosephosphate isomerase, cytosolic [Nelumbo nucifera]

Alignment

This contig is upended


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JMSF030A18-                                                    GGTATATTGTCGATCTCTC
                      ____________________________________________________________
consensus                                                      GGTATATTGTCGATCTCTC
 
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JMFF025M06-                            GAACCCTTAATTGTAAAAATGGGCAGAAAGTTCTTCGTCGGTG
JMFF003N05-                            GAACCCTTAATTGTAAAAATGGGCAGAAAGTTCTTCGTCGGTG
JMSF030A18-           GGTGTCTTCACGCAGTGGAACCCTTAATTGTAAAAATGGGCAGAAAGTTCTTCGTCGGTG
                      ____________________________________________________________
consensus             GGTGTCTTCACGCAGTGGAACCCTTAATTGTAAAAATGGGCAGAAAGTTCTTCGTCGGTG
 
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JMFF025M06-           GTAACTGGAAATGCAATGGAACCACTGAGGAGGTGAAGAAGATTGTGACCACATTGAATG
JMFF003N05-           GTAACTGGAAATGCAATGGAACCACTGAGGAGGTGAAGAAGATTGTGACCACATTGAATG
JMSF030A18-           GTAACTGGAAATGCAATGGAACCACTGAGGAGGTGAAGAAGATTGTGACCACATTGAATG
                      ____________________________________________________________
consensus             GTAACTGGAAATGCAATGGAACCACTGAGGAGGTGAAGAAGATTGTGACCACATTGAATG
 
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JMFF025M06-           AAGCTGAAGTTCCATCGGAAGATGATGTTGAGGTTGTGGTCAGTCCTCCTTTTGTGTTTC
JMFF003N05-           AAGCTGAAGTTCCATCGGAAGATGATGTTGAGGTTGTGGTCAGTCCTCCTTTTGTGTTTC
JMSF030A18-           AAGCTGAAGTTCCATCGGAAGATGATGTTGAGGTTGTGGTCAGTCCTCCTTTTGTGTTTC
                      ____________________________________________________________
consensus             AAGCTGAAGTTCCATCGGAAGATGATGTTGAGGTTGTGGTCAGTCCTCCTTTTGTGTTTC
 
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JMFF025M06-           TTCCTTTGGTCAAAACCTTATTGCGTCCTGATTTCTCTATTGCTGCCCAGAACTGTTGGG
JMFF003N05-           TTCCTTTGGTCAAAACCTTATTGCGTCCTGATTTCTCTATTGCTGCCCAGAACTGTTGGG
JMSF030A18-           TTCCTTTGGTCAAAACCTTATTGCGTCCTGATTTCTCTATTGCTGCCCAGAACTGTTGGG
rJMFF003N05+                                              CTATTGCTGCCCAGAACTGTTGGG
rJMFF025M06+                                              CTATTGCTGCCCAGAACTGTTGGG
                      ____________________________________________________________
consensus             TTCCTTTGGTCAAAACCTTATTGCGTCCTGATTTCTCTATTGCTGCCCAGAACTGTTGGG
 
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JMFF025M06-           TTCGAAAAGGAGGTGC-TTTTACTGGTGAAATTAGTGTTGAGATGCTGATAAATTTGGGC
JMFF003N05-           TTCGAAAAGGAGGTGC-TTTTACTGGTGAAATTAGTGTTGAGATGCTGATAAATTTGGGC
JMSF030A18-           TTCGAAAAGGAGGTGC-TTTTACTGGTGAAATTAGTGTTGAGATGCTGATAAATTTGGGC
rJMFF003N05+          TTCGAAAAGGAGGTGCTTTTTACTGGTGAAATTAGTGTTGAGATGCTGATAAATTTGGGC
rJMFF025M06+          TTCGAAAAGGAGGTGC-TTTTACTGGTGAAATTAGTGTTGAGATGCTGATAAATTTGGGC
                      ____________________________________________________________
consensus             TTCGAAAAGGAGGTGC-TTTTACTGGTGAAATTAGTGTTGAGATGCTGATAAATTTGGGC
 
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JMFF025M06-           ATTCCATGGGTCATCCTTGGCCATTCGGAGAGAAGACAACTACTGAATGAATCAAATGAT
JMFF003N05-           ATTCCATGGGTCATCCTTGGCCATTCGGAGAGAAGACAACTACTGAATGAATCAAATGAT
JMSF030A18-           ATTCCATGGGTCATCCTTGGCCATTCGGAGAGAAGACAACTACTGAATGAATCAAATGAT
rJMFF003N05+          ATTCCATGGGTCATCCTTGGCCATTCGGAGAGAAGACAACTACTGAATGAATCAAATGAT
rJMFF025M06+          ATTCCATGGGTCATCCTTGGCCATTCGGAGAGAAGACAACTACTGAATGAATCAAATGAT
                      ____________________________________________________________
consensus             ATTCCATGGGTCATCCTTGGCCATTCGGAGAGAAGACAACTACTGAATGAATCAAATGAT
 
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JMFF025M06-           TTTGTAGCAGATAAAGTTGCATATGCACTTTCCCAAGGCATAAAAGTCATTGCTTGTGTT
JMFF003N05-           TTTGTAGCAGATAAAGTTGCATATGCACTTTCCCAAGGCATAAAAGTCATTGCTTGTGTT
JMSF030A18-           TTTGTAGCAGATAAAGTTGCATATGCACTTTCCCAAGGCATAAAAGTCATTGCTTGTGTT
rJMSF009B17+                                             AGGCATAAAAGTCATTGCTTGTGTT
rJMFF003N05+          TTTGTAGCAGATAAAGTTGCATATGCACTTTCCCAAGGCATAAAAGTCATTGCTTGTGTT
rJMFF025M06+          TTTGTAGCAGATAAAGTTGCATATGCACTTTCCCAAGGCATAAAAGTCATTGCTTGTGTT
                      ____________________________________________________________
consensus             TTTGTAGCAGATAAAGTTGCATATGCACTTTCCCAAGGCATAAAAGTCATTGCTTGTGTT
 
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JMFF025M06-           GGAGAGACTCTTGAGCAGAGAGAATCAGGGGCTACAATGGAAGTAGTTGCCGCCCAAACA
JMFF003N05-           GGAGAGACTCTTGAGCAGAGAGAATCAGGGGCTACAATGGAAGTAGTTGCCGCCCAAACA
JMSF030A18-           GGAGAGACTCTTGAGCAGAGAGAATCAGGGGCTACAATGGAAGTAGTTGCCGCCCAAACA
rJMSF009B17+          GGAGAGACTCTTGAGCAGAGAGAATCAGGGGCTACAACGGAAGTAGTTGCCGCCCAAACA
rJMFF003N05+          GGAGAGACTCTTGAGCAGAGAGAATCAGGGGCTACAATGGAAGTAGTTGCCGCCCAAACA
rJMFF025M06+          GGAGAGACTCTTGAGCAGAGAGAATCAGGGGCTACAATGGAAGTAGTTGCCGCCCAAACA
                      ____________________________________________________________
consensus             GGAGAGACTCTTGAGCAGAGAGAATCAGGGGCTACAATGGAAGTAGTTGCCGCCCAAACA
 
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JMFF025M06-           AAAGCAATTGCAGAGAAGGTCTCAAATTGGTCCAGCATTGTTTTGGCTTATGAGCCTGTT
JMFF003N05-           AAAGCAATTGCAGAGAAGGTCTCAAATTGGTCCAGCATTGTTTTGGCTTATGAGCCTGTT
JMSF030A18-           AAAGCAATTGC-----AGGTCTCAAATTGGTCCAGCATTGTTTTGGCTTATGAGCCTGTT
rJMSF009B17+          ANAGCAATTGCNGAGAAGGTCTCAANTTGGTCCANCNTTGNTTTGGCTTATGAGCCTGTN
rJMFF003N05+          AAAGCAATTGCAGAGAAGGTCTCAAATTGGTCCAGCATTGTTTTGGCTTATGAGCCTGTT
rJMFF025M06+          AAAGCAATTGCAGAGAAGGTCTCAAATTGGTCCAGCATTGTTTTGGCTTATGAGCCTGTT
                      ____________________________________________________________
consensus             AAAGCAATTGCAGAGAAGGTCTCAAATTGGTCCAGCATTGTTTTGGCTTATGAGCCTGTT
 
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JMFF025M06-           TGGGCCATTGGTACTGGAAAGGTCGCCACTCCTGCTCAGG                    
JMFF003N05-           TGGGCCATTGGTACTGGAAAGGTCGCCACTCCTGCTCAGGCTCAAGAAGTTCATTCTGAA
JMSF030A18-           TGGGCCATTGGTACTGGAAAGGTCGCCACTCCTGCTCAGGCTCAAGAAGTTCATTCTGAA
rJMSF009B17+          NGGGCCANTGNTNCTGGAAAGGTCGCCACTCNTGCTCAGGCTCAAGAAGTTCATTNTGAA
rJMFF003N05+          TGGGCCATTGGTACTGGAAAGGTCGCCACTCCTGCTCAGGCTCAAGAAGTTCATTCTGAA
rJMFF025M06+          TGGGCCATTGGTACTGGAAAGGTCGCCACTCCTGCTCAGGCTCAAGAAGTTCATTCTGAA
                      ____________________________________________________________
consensus             TGGGCCATTGGTACTGGAAAGGTCGCCACTCCTGCTCAGGCTCAAGAAGTTCATTCTGAA
 
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JMFF003N05-           C                                                           
JMSF030A18-           CTGAGAAAATGGCTTCATGACAATGTTGGCCCAGAAGTTGCTGCTTCTACTAGGATCATC
rJMSF009B17+          CTGAGAAAANGGNTTCATGACAATGTTGGNCCAGAAGTTGNTGCTTGTATTAGGATCATC
rJMFF003N05+          CTGAGAAAATGGCTTCATGACAATGTTGGCCCAGAAGTTGCTGCTTCTACTAGGATCATC
rJMFF025M06+          CTGAGAAAATGGCTTCATGACAATGTTGGCCCAGAAGTTGCTGCTTCTACTAGGATCATC
                      ____________________________________________________________
consensus             CTGAGAAAATGGCTTCATGACAATGTTGGCCCAGAAGTTGCTGCTTCTACTAGGATCATC
 
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JMSF030A18-           TATGGAGGT                                                   
rJMSF009B17+          TATGGAGGTTCTGTCAATGGAGCAAACTGCAAAGAGTTGGCAACAAAGCCTGACGTGGAT
rJMFF003N05+          TATGGAGGTTCTGTCAATGGAGCAAACTGCAAAGAGTTGGCAACAAAGCCTGACGTGGAT
rJMFF025M06+          TATGGAGGTTCTGTCAATGGAGCAAACTGCAAAGAGTTGGCAACAAAGCCTGACGTGGAT
                      ____________________________________________________________
consensus             TATGGAGGTTCTGTCAATGGAGCAAACTGCAAAGAGTTGGCAACAAAGCCTGACGTGGAT
 
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rJMSF009B17+          GGGTTTTTGGTTGGNGGTGCCTCTCTAAAGCCCGAGTTCCNTGAGATTATCANGTCTGCA
rJMFF003N05+          GGGTTTTTGGTTGGTGGTGCCTCTCTAAAGCCCGAGTTCATTGAGATTATCAAGTCTGCA
rJMFF025M06+          GGGTTTTTGGTTGGTGGTGCCTCTCTAAAGCCCGAGTTCATTGAGATTATCAAGTCTGCA
                      ____________________________________________________________
consensus             GGGTTTTTGGTTGGTGGTGCCTCTCTAAAGCCCGAGTTCATTGAGATTATCAAGTCTGCA
 
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rJMSF009B17+          ACTGTGAAACAGNGCACTNGAAGATNATTGCAGGTATANGGATA                
rJMFF003N05+          ACTGTGAAACAGAGCACTTGAAGATGATTGCAGGTATATGGATACACGCAAGTGATGCTT
rJMFF025M06+          ACTGTGAAACAGAGCACTTGAAGATGATTGCAGGTATATGGATACACGCAAGTGATGCTT
                      ____________________________________________________________
consensus             ACTGTGAAACAGAGCACTTGAAGATGATTGCAGGTATATGGATACACGCAAGTGATGCTT
 
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rJMFF003N05+          TTACCGTTGTTTTTGCTACAGGAATGTGTTTCTGGTTTGTGTTTGACCCAGGGTTTCTTG
rJMFF025M06+          TTACCGTTGTTTTTGCTACAGGAATGTGTTTCTGGTTTGTGTTTGACCCAGGGTTTCTTG
                      ____________________________________________________________
consensus             TTACCGTTGTTTTTGCTACAGGAATGTGTTTCTGGTTTGTGTTTGACCCAGGGTTTCTTG
 
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rJMFF003N05+          TCTTGTAAAATAAACGAGAGATATTTACTAAGCTCGTTCTTTTGATCTAAGAAAAAAC  
rJMFF025M06+          TCTTGTAAAATAAACGAGAGATATTTACTAAGCTCGTTCTTTTGATCTAAGAAAAAACTA
                      ____________________________________________________________
consensus             TCTTGTAAAATAAACGAGAGATATTTACTAAGCTCGTTCTTTTGATCTAAGAAAAAACTA