Contig 001108:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF022N13Sequence486007857 (4)ref|XP_009800735.1|129PREDICTED: uncharacterized protein LOC104246593 [Nicotiana sylvestris]732001108 (4)ref|XP_009800735.1|305PREDICTED: uncharacterized protein LOC104246593 [Nicotiana sylvestris]
JMFF036N24Sequence160001108 (4)ref|XP_011463569.1|110PREDICTED: uncharacterized protein LOC101303794 [Fragaria vesca subsp. vesca]
JMFF040J03Sequence485007857 (4)ref|XP_009800735.1|116PREDICTED: uncharacterized protein LOC104246593 [Nicotiana sylvestris]650001108 (4)ref|XP_009800735.1|286PREDICTED: uncharacterized protein LOC104246593 [Nicotiana sylvestris]
JMSF019E01Sequence269007857 (4)802001108 (4)ref|XP_009800735.1|327PREDICTED: uncharacterized protein LOC104246593 [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMSF019E01+                                                                 GAAAT
                      ____________________________________________________________
consensus                                                                    GAAAT
 
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rJMSF019E01+          CAGGACGAGATGCTGTAGGGAATGTGTGGCGTGAATATNGAGAGAATCGATNGGGCAGAG
                      ____________________________________________________________
consensus             CAGGACGAGATGCTGTAGGGAATGTGTGGCGTGAATATNGAGAGAATCGATNGGGCAGAG
 
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rJMSF019E01+          CTCTGGGCTTGCCCACATGGAGAAAACTGCGGATAAGTGGGCAAAGAACGGGATAGGTGA
rJMFF022N13+                                                          CGGGATAGGTGA
                      ____________________________________________________________
consensus             CTCTGGGCTTGCCCACATGGAGAAAACTGCGGATAAGTGGGCAAAGAACGGGATAGGTGA
 
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rJMSF019E01+          AGAATGGCAGGAGCAATGGTGGGAACATTACGATGCTTCTGNCCAAGCGGAGAAATGGGC
rJMFF040J03+                                                               AATGGGC
rJMFF036N24+                                                    CCAAGCGGAGAAATGGGC
rJMFF022N13+          AGAATGGCAGGAGCAATGGTGGGAACATTACGATGCTTCTGGCCAAGCGGAGAAATGGGC
                      ____________________________________________________________
consensus             AGAATGGCAGGAGCAATGGTGGGAACATTACGATGCTTCTGGCCAAGCGGAGAAATGGGC
 
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rJMSF019E01+          ACATAAGTGGTGCAGCATTGATCCTAACACGCCTCTTGATGCTGGCCACGCTCACGTGTG
rJMFF040J03+          ACATAAGTGGTGCAGCATTGATCNTAACACGCCTCTTGATGCTGGCCACGCTCACGTGTG
rJMFF036N24+          ACATAAGTGGTGCAGCATTGATCCTAACACGCCTCTTGATGCTGGCCACGCTCACGTGTG
rJMFF022N13+          ACATAAGTGGTGCAGCATTGATCCTAACACGCCTCTTGATGCTGGCCACGCTCACGTGTG
                      ____________________________________________________________
consensus             ACATAAGTGGTGCAGCATTGATCCTAACACGCCTCTTGATGCTGGCCACGCTCACGTGTG
 
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rJMSF019E01+          GCATGAAAGGTGGGGCGAGAAATATGATGGGCATGGAGGTGCGACGAAGTACACGGACAA
rJMFF040J03+          GCATGAAAGGTGGGGCGAGAAATATGATGGGCATGGAGGTGCGACGAAGTACACGGACAA
rJMFF036N24+          GCATGAAAGGTGGGGCGAGAAATATGATGGGCATGGAGGTGCGACGAAGTACACGGACAA
rJMFF022N13+          GCATGAAAGGTGGGGCGAGAAATATGATGGGCATGGAGGTGCGACGAAGTACACGGACAA
                      ____________________________________________________________
consensus             GCATGAAAGGTGGGGCGAGAAATATGATGGGCATGGAGGTGCGACGAAGTACACGGACAA
 
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rJMSF019E01+          ATGGGCTGAGCGGTGCGAAGGTGATGGGTGGTCGAAATGGGGCGACAAATGGGACGAGAG
rJMFF040J03+          ATGGGCTGAGCGGTGCGAAGGTGATGGGTGGTCGAAATGGGGCGACAAATGGGACGAGAG
rJMFF036N24+          ATGGGCTGAGCGGTGCGA                                          
rJMFF022N13+          ATGGGCTGAGCGGTGCGAAGGTGATGGGTGGTCGAAATGGGGCGACAAATGGGACGAGAG
                      ____________________________________________________________
consensus             ATGGGCTGAGCGGTGCGAAGGTGATGGGTGGTCGAAATGGGGCGACAAATGGGACGAGAG
 
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rJMSF019E01+          CTTTGATTTAAACGCTAACGGGGTGAAACAAGGGGAGACGTGGTGGGAAGGCAAAAGTGG
rJMFF040J03+          CTTTGATTTAAACGCTAACGGGGTGAAACAAGGGGAGACGTGGTGGGAAGGCAAAAGTGG
rJMFF022N13+          CTTTGATTTAAACGCTAACGGGGTGAAACAAGGGGAGACGTGGTGGGAAGGCAAAAGTGG
                      ____________________________________________________________
consensus             CTTTGATTTAAACGCTAACGGGGTGAAACAAGGGGAGACGTGGTGGGAAGGCAAAAGTGG
 
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rJMSF019E01+          CGATAGATGGAACCGCACGTGGGGCGAGGGGCACAACGGGTCGGGATGGGTGCACAAGTA
rJMFF040J03+          CGATAGATGGAACCGCACGTGGGGCGAGGGGCACAACGGGTCGGGATGGGTGCACAAGTA
rJMFF022N13+          CGATAGATGGAACCGCACGTGGGGCGAGGGGCACAACGGGTCGGGATGGGTGCACAAGTA
                      ____________________________________________________________
consensus             CGATAGATGGAACCGCACGTGGGGCGAGGGGCACAACGGGTCGGGATGGGTGCACAAGTA
 
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rJMSF019E01+          CGGCAAGAGCAGCAGCGGGGAGCACTGGGACACTCATGCTGAGGAAGAAACATGGTATGA
rJMFF040J03+          CGGCAAGAGCAGCAGCGGGGAGCACTGGGACACTCATGGTGAGGAAGAAACATGGTATGA
rJMFF022N13+          CGGCAAGAGCAGCAGCGGGGAGCACTGGGACACTCATGCTGAGGAAGAAACATGGTATGA
                      ____________________________________________________________
consensus             CGGCAAGAGCAGCAGCGGGGAGCACTGGGACACTCATGCTGAGGAAGAAACATGGTATGA
 
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rJMSF019E01+          GAGATTCCCACATTATGGCTTCTATCATTGCTTTGAGAACTCTGTGCAACTCAAAGAAGT
rJMFF040J03+          GAGATTCCCACATTATGGCTTCTATCATTGCTTTGAGAACTCTGTGCAACTCAAAGAAGT
rJMFF022N13+          GAGATTCCCACATTATGGCTTCTATCATTGCTTTGAGAACTCTGTGCAACTCAAAGAAGT
                      ____________________________________________________________
consensus             GAGATTCCCACATTATGGCTTCTATCATTGCTTTGAGAACTCTGTGCAACTCAAAGAAGT
 
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rJMSF019E01+          TAAGAGACCATCAGAATGGCCATGAGAAGTGTGTTCTGTGCTTCTTTTTGTCAGTTCTAA
rJMFF040J03+          TAAGAGACCATCAGAATGGCCATGAGAAGTGTGTTCTGTGCTTCTTTTTGTCAGTTCTAA
rJMFF022N13+          TAAGAGACCATCAGAATGGCCATGAGAAGTGTGTTCTGTGCTTCTTTTTGTCAGTTCTAA
                      ____________________________________________________________
consensus             TAAGAGACCATCAGAATGGCCATGAGAAGTGTGTTCTGTGCTTCTTTTTGTCAGTTCTAA
 
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rJMSF019E01+          TGCACACTTTATGGTGTTGTTGCTTCAGAAGTTATAATTGTGGCCTTGCAGATTTGCAGG
rJMFF040J03+          TGCACACTTTATGGTGTTGTTGCTTCAGAAGTTATAATTGTGGCCTTGCAGATTTGCAGG
rJMFF022N13+          TGCACACTTTATGGTGTTGTTGCTTCAGAAGTTATAATTGTGGCCTTGCAGATTTGCAGG
                      ____________________________________________________________
consensus             TGCACACTTTATGGTGTTGTTGCTTCAGAAGTTATAATTGTGGCCTTGCAGATTTGCAGG
 
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rJMSF019E01+          TCTTTTAGATTATATAGAAGGCATAGTTGGTATAAAAATGTTACTTTTCTCACTGTAATC
rJMFF040J03+          TCTTTTAGATTATATAGAAGGCATAGTTGGTATAAAAATGTTACTTTTCTCACTGTAATC
rJMFF022N13+          TCTTTTAGATTATATAGAAGGCATAGTTGGTATAAAAATGTTACTTTTCTCACTGTAATC
                      ____________________________________________________________
consensus             TCTTTTAGATTATATAGAAGGCATAGTTGGTATAAAAATGTTACTTTTCTCACTGTAATC
 
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rJMSF019E01+          TGACCTTGAAATGGTGT                                           
rJMFF040J03+          TGACCTTGAAATGGTGTTCAAACCATTCTGTTGCACTTTCATA                 
rJMFF022N13+          TGACCTTGAAATGGTGTTCAAACCATTCTGTTGCACTTTCATAATTTATGCCTCATAATA
                      ____________________________________________________________
consensus             TGACCTTGAAATGGTGTTCAAACCATTCTGTTGCACTTTCATAATTTATGCCTCATAATA