Contig 001106:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF015G07Sequence614000073 (7)emb|CDP04381.1|1e-88unnamed protein product [Coffea canephora]625001106 (3)emb|CDP04381.1|8e-81unnamed protein product [Coffea canephora]
JMFF021M04Sequence560000073 (7)emb|CDP04381.1|2e-74unnamed protein product [Coffea canephora]634001106 (3)emb|CDP04381.1|2e-74unnamed protein product [Coffea canephora]
JMFF035M02Sequence608000073 (7)emb|CDP04381.1|9e-74unnamed protein product [Coffea canephora]726001106 (3)emb|CDP04381.1|6e-72unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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rJMFF035M02+                                                            TTAGGGGAAG
                      ____________________________________________________________
consensus                                                               TTAGGGGAAG
 
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rJMFF035M02+          GACAGCAGATTTCTNGTACATGCTTTTATTGGGAGCCACTGTTTTAACTGGGATTGTTCT
                      ____________________________________________________________
consensus             GACAGCAGATTTCTNGTACATGCTTTTATTGGGAGCCACTGTTTTAACTGGGATTGTTCT
 
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rJMFF015G07+          TATTGGGGGAATGATACCCTATGTCTCTGAGTCATTTGCAAGGATTATCTTTCTTAGCAA
rJMFF035M02+          TATTGGGGGAATGATACCCTATGTCTCTGAGTCATTTGCAAGGATTATC-TTCTTAGCAA
rJMFF021M04+                                      GAGTCATTTGCAAGGATTATCTTTCTTAGCAA
                      ____________________________________________________________
consensus             TATTGGGGGAATGATACCCTATGTCTCTGAGTCATTTGCAAGGATTATCTTTCTTAGCAA
 
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rJMFF015G07+          TTCACTAACATTCATGATGGTATATGTTTGGAGCAAGCAAAATCCTTTCATCCACATGAG
rJMFF035M02+          TTCACTAACATTCATGATGGTATATGTTTGGAGCAAGCAAAATCCTTTCATCCACATGAG
rJMFF021M04+          TTCACTAACATTCATGATGGTATATGTTTGGAGCAAGCAAAATCCTTTCATCCACATGAG
                      ____________________________________________________________
consensus             TTCACTAACATTCATGATGGTATATGTTTGGAGCAAGCAAAATCCTTTCATCCACATGAG
 
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rJMFF015G07+          TTTTTTGGGTCTCTTTACTTTCACCGCTGCTTATCTTCCATGGGTGCTTTTGGGCTTCTC
rJMFF035M02+          TTTTTTGGGTCTCTTTACTTTCACCGCTGCTTATCTTCCATGGGTGCTTTTGGGCTTCTC
rJMFF021M04+          TTTTTTGGGTCTCTTTACTTTCACCGCTGCTTATCTTCCATGGGTGCTTTTGGGCTTCTC
                      ____________________________________________________________
consensus             TTTTTTGGGTCTCTTTACTTTCACCGCTGCTTATCTTCCATGGGTGCTTTTGGGCTTCTC
 
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rJMFF015G07+          TGTCCTTGTTGGCGCTAGTGCTTGGGTGGACCTTCTGGGGATGATTGCTGGTCACGCTTA
rJMFF035M02+          TGTCCTTGTTGGCGCTAGTGCTTGGGTGGACCTTCTGGGGATGATTGCTGGTCACGCTTA
rJMFF021M04+          TGTCCTTGTTGGCGCTAGTGCTTGGGTGGACCTTCTGGGGATGATTGCTGGTCACGCTTA
                      ____________________________________________________________
consensus             TGTCCTTGTTGGCGCTAGTGCTTGGGTGGACCTTCTGGGGATGATTGCTGGTCACGCTTA
 
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rJMFF015G07+          CTATTTTCTCGAGGACGTTTATCCACAAATGACTGGTCGCCGACCCCTAAAGACTCCAGC
rJMFF035M02+          CTATTTTCTCGAGGACGTTTATCCACAAATGACTGGTCGCCGACCCCTAAAGACTCCAGC
rJMFF021M04+          CTATTTTCTCGAGGACGTTTATCCACAAATGACTGGTCGCCGACCCCTAAAGACTCCAGC
                      ____________________________________________________________
consensus             CTATTTTCTCGAGGACGTTTATCCACAAATGACTGGTCGCCGACCCCTAAAGACTCCAGC
 
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rJMFF015G07+          ATTTATCAGGTCATTCTTTGCTGAAGAACCTGTGGTAATGGCTCAGCCAGCTAATGTGCG
rJMFF035M02+          ATTTATCAGGTCATTCTTTGCTGAAGAACCTGTGGTAATGGCTCAGCCAGCTAATGTGCG
rJMFF021M04+          ATTTATCAGGTCATTCTTTGCTGAAGAACCTGTGGTAATGGCTCAGCCAGCTAATGTGCG
                      ____________________________________________________________
consensus             ATTTATCAGGTCATTCTTTGCTGAAGAACCTGTGGTAATGGCTCAGCCAGCTAATGTGCG
 
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rJMFF015G07+          CTTTGCTCCTCCTCCTATAGAAGAAGATCAACAGAATTGAACAGAAGATTGTTTTGAGAG
rJMFF035M02+          CTTTGCTCCTCCTCCTATAGAAGAAGATCAACAGAATTGAACAGAAGATTGTTTTGAGAG
rJMFF021M04+          CTTTGCTCCTCCTCCTATAGAAGAAGATCAACAGAATTGAACAGAAGATTGTTTTGAGAG
                      ____________________________________________________________
consensus             CTTTGCTCCTCCTCCTATAGAAGAAGATCAACAGAATTGAACAGAAGATTGTTTTGAGAG
 
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rJMFF015G07+          TTGATATGTAGTTTTGTAAATTTGACCTGGATATTTTGGTAGAAAAGATACAGTTTTCTT
rJMFF035M02+          TTGATATGTAGTTTTGTAAATTTGACCTGGATATTTTGGTAGAAAAGATACAGTTTTCTT
rJMFF021M04+          TTGATATGTAGTTTTGTAAA-TTGACCTGGATATTTTGGTAGAAAAGATACAGTTTTCTT
                      ____________________________________________________________
consensus             TTGATATGTAGTTTTGTAAATTTGACCTGGATATTTTGGTAGAAAAGATACAGTTTTCTT
 
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rJMFF015G07+          CTTCTCATCAATGGTTAGGAGGTAGATACTATGTCTGTTTCATTCTTTTGTCATAGATCT
rJMFF035M02+          CTTCTCATCAATGGTTAGGAGGTAGATACTATGTCTGTTTCATTCTTTTGTCATAGATCT
rJMFF021M04+          CTTCTCATCAATGGTTAGGAGGTAGATACTATGTCTGTTTCATTCTTTTGTCATAGATCT
                      ____________________________________________________________
consensus             CTTCTCATCAATGGTTAGGAGGTAGATACTATGTCTGTTTCATTCTTTTGTCATAGATCT
 
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rJMFF015G07+          TGGCTGATGCCTTTGCATTTCGCAAGTCTGGTTTGAGGAAGTATGGTGTATGTACTCAAA
rJMFF035M02+          TGGCTGATGCCTTTGCATTTCGCAAGTCTGGTTTGAGGAAGTATGGTGTATGTACTCAAA
rJMFF021M04+          TGGCTGATGCCTTTGCATTTCGCAAGTCTGGTTTGAGGAAGTATGGTGTATGTACTCAAA
                      ____________________________________________________________
consensus             TGGCTGATGCCTTTGCATTTCGCAAGTCTGGTTTGAGGAAGTATGGTGTATGTACTCAAA
 
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rJMFF015G07+          CTGGATAATATGCTGATGTAGAACT                                   
rJMFF035M02+          CTGGATAATATGCTGATGTAGAACTTTATTGCGGATATTGCTTTGCAGATTGGTAAA   
rJMFF021M04+          CTGGATAATATGCTGATGTAGAACTTTATTGCGGATATTGCTTTGCAGATTGGTAAAATA
                      ____________________________________________________________
consensus             CTGGATAATATGCTGATGTAGAACTTTATTGCGGATATTGCTTTGCAGATTGGTAAAATA