Contig 001105:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF012F15Sequence467000777 (7)764001105 (6)ref|XP_009792511.1|2e-106PREDICTED: tubby-like F-box protein 3 isoform X2 [Nicotiana sylvestris]
JMFF021L04Sequence568000777 (7)711001105 (6)ref|XP_009624999.1|2e-96PREDICTED: tubby-like F-box protein 3 isoform X2 [Nicotiana tomentosiformis]
JMSF026I23Sequence620000777 (7)736001105 (6)ref|XP_009792511.1|1e-102PREDICTED: tubby-like F-box protein 3 isoform X2 [Nicotiana sylvestris]
JMSF029O13Sequence612000777 (7)734001105 (6)ref|XP_009624993.1|8e-85PREDICTED: tubby-like F-box protein 3 isoform X1 [Nicotiana tomentosiformis]
JMSF033G02Sequence631000777 (7)753001105 (6)ref|XP_009792511.1|3e-109PREDICTED: tubby-like F-box protein 3 isoform X2 [Nicotiana sylvestris]
JMSF053A07Sequence601000777 (7)860001105 (6)ref|XP_009792511.1|2e-111PREDICTED: tubby-like F-box protein 3 isoform X2 [Nicotiana sylvestris]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF053A07+ ATCGGGAAATTGAGGTCAAATTTTTCTGGGAACCAAGTT
                      ____________________________________________________________
consensus ATCGGGAAATTGAGGTCAAATTTTTCTGGGAACCAAGTT
 
. : . : . : . : . : . :
rJMSF053A07+ CACAGTGTATGATGCTTCATTGGCGCATGCTGGAGTGAAAATGGTGAAAAAGTAGATCCA
rJMSF033G02+ A
                      ____________________________________________________________
consensus CACAGTGTATGATGCTTCATTGGCGCATGCTGGAGTGAAAATGGTGAAAAAGTAGATCCA
 
. : . : . : . : . : . :
rJMSF053A07+ CTAGGCTTGTGGCCTTAAAGCAAATTGCTCCAAGAGTG-CCCGTTAGCAACTACGAAGTA
rJMSF033G02+ CTAGGCTTGTGGCCTTAAAGCAAATTGCTCCCAGAGTG-CCCGTTAGCAACTACGAAGTA
rJMSF026I23+ AAGCAAATTGCTCCAAGAGTGCCCCGTTAGCAACTACGAAGTA
rJMSF029O13+ AAGCAAATTGCTCCAAGAGTG-CCCGTTAGCAACTACGAAGTA
rJMFF012F15+ AAGCAAATTGCTCCAAGAGTG-CCCGTTAGCAACTACGAAGTA
                      ____________________________________________________________
consensus CTAGGCTTGTGGCCTTAAAGCAAATTGCTCCAAGAGTG-CCCGTTAGCAACTACGAAGTA
 
. : . : . : . : . : . :
rJMSF053A07+ GCTCACATTTCATATGAGTTGAACGTGCTTGGAGCCAGGGGTCCAAGAAGAATGCAGTGT
rJMSF033G02+ GCTCACATTTCATATGAGTTGAACGTGCTTGGAGCCAGGGGTCCAAGAAGAATGCAGTGT
rJMSF026I23+ GCTCACATTTCATATGAGTTGAACGTGCTTGGAGCCAGGGGTCCAAGAAGAATGCAGTGT
rJMSF029O13+ GCTCACATTTCATATGAGTTGAACGTGCTTGGAGCCAGGGGTCCAAGAAGAATGCAGT-T
rJMFF012F15+ GCTCACATTTCATATGAGTTGAACGTGCTTGGAGCCAGGGGTCCAAGAAGAATGCAGTGT
rJMFF021L04+ TTCATATGAGTTGAACGTGCTTGGAGCCAGGGGTCCAAGAAGAATGCAGTGT
                      ____________________________________________________________
consensus GCTCACATTTCATATGAGTTGAACGTGCTTGGAGCCAGGGGTCCAAGAAGAATGCAGTGT
 
. : . : . : . : . : . :
rJMSF053A07+ GTTATGGATAGCATCCCAGCTTGTGCCATTAAACCTGGGGGTGTGGCCCCAACACAGACT
rJMSF033G02+ GTTATGGATAGCATCCCAGCTTGTGCCATTAAACCTGGGGGTGTGGCCCCAACACAGACT
rJMSF026I23+ GTTATGGATAGCATCCCAGCTTGTGCCATTAAACCTGGGGGTGTGGCCCCAACACAGACT
rJMSF029O13+ GTTATGGATAGCATCCCAGCTTGTGCCATTAAACCTGGGGGTGTGGCCCCAACACAGACT
rJMFF012F15+ GTTATGGATAGCATCCCAGCTTGTGCCATTAAACCTGGGGGTGTGGCCCCAACACAGACT
rJMFF021L04+ GTTATGGATAGCATCCCAGCTTGTGCCATTAAACCTGGGGGTGTGGCCCCAACACAGACT
                      ____________________________________________________________
consensus GTTATGGATAGCATCCCAGCTTGTGCCATTAAACCTGGGGGTGTGGCCCCAACACAGACT
 
. : . : . : . : . : . :
rJMSF053A07+ GATTTTCCAGTTAGCAATAATGATTCATTTTCAACAATACCGTTTTCCCGATCAAAATCA
rJMSF033G02+ GATTTTCCAGTTAGCAATAATGATTCATTTTCAACAATACCGTTTTCCCGATCAAAATCA
rJMSF026I23+ GATTTTCCAGTTAGCAATAATGATTCATTTTCAACAATACCGTTTTCCCGATCAAAATCA
rJMSF029O13+ GATTTTCCAGTTAGCAATAATGATTCATTTTCAACAATACCGTTTTCCCGATCAAAATCA
rJMFF012F15+ GATTTTCCAGTTAGCAATAATGATTCATTTTCAACAATACCGTTTTCCCGATCAAAATCA
rJMFF021L04+ GATTTTCCAGTTAGCAATAATGATTCATTTTCAACAATACCGTTTTCCCGATCAAAATCA
                      ____________________________________________________________
consensus GATTTTCCAGTTAGCAATAATGATTCATTTTCAACAATACCGTTTTCCCGATCAAAATCA
 
. : . : . : . : . : . :
rJMSF053A07+ GCCAGTGTGGAGAAATCTTTATCTGGATCCCTGGAGAACCAAACAGAGGGAGCACTAGTT
rJMSF033G02+ GCCAGTGTGGAGAAATCTTTATCTGGATCCCTGGAGAACCAAACAGAGGGAGCACTAGTT
rJMSF026I23+ GCCAGTGTGGAGAAATCTTTATCTGGATCCCTGGAGAACCAAACAGAGGGAGCACTAGTT
rJMSF029O13+ GCCAGTGTGGAGAAATCTTTATCTGGATCCCTGGAGAACCAAACAGAGGGAGCACTAGTT
rJMFF012F15+ GCCAGTGTGGAGAAATCTTTATCTGGATCCCTGGAGAACCAAACAGAGGGAGCACTAGTT
rJMFF021L04+ GCCAGTGTGGAGAAATCTTTATCTGGATCCCTGGAGAACCAAACAGAGGGAGCACTAGTT
                      ____________________________________________________________
consensus GCCAGTGTGGAGAAATCTTTATCTGGATCCCTGGAGAACCAAACAGAGGGAGCACTAGTT
 
. : . : . : . : . : . :
rJMSF053A07+ TTGAGAAACAAGGCTCCAAGATGGCATGAGCAACTCCAATGCTGGTGTTTGAACTTTCAT
rJMSF033G02+ TTGAGAAACAAGGCTCCAAGATGGCATGAGCAACTCCAATGCTGGTGTTTGAACTTTCAT
rJMSF026I23+ TTGAGAAACAAGGCTCCAAGATGGCATGAGCAACTCCAATGCTGGTGTTTGAACTTTCAT
rJMSF029O13+ TTGAGAAACAAGGCTCCAAGATGGCATGAGCAACTCCAATGCTGGTGTTTGAACTTTCAT
rJMFF012F15+ TTGAGAAACAAGGCTCCAAGATGGCATGAGCAACTCCAATGCTGGTGTTTGAACTTTCAT
rJMFF021L04+ TTGAGAAACAAGGCTCCAAGATGGCATGAGCAACTCCAATGCTGGTGTTTGAACTTTCAT
                      ____________________________________________________________
consensus TTGAGAAACAAGGCTCCAAGATGGCATGAGCAACTCCAATGCTGGTGTTTGAACTTTCAT
 
. : . : . : . : . : . :
rJMSF053A07+ GGACGGGTAACAGTTGCATCAGTAAAAAATTTTCAGTTGGTGGCTGCTCCTGAAAATGGG
rJMSF033G02+ GGACGGGTAACAGTTGCATCAGTAAAAAATTTTCAGTTGGTGGCTGCTCCTGAAAATGGG
rJMSF026I23+ GGACGGGTAACAGTTGCATCAGTAAAAAATTTTCAGTTGGTGGCTGCTCCTGAAAATGGG
rJMSF029O13+ GGACGGGTAACAGTTGCATCAGTAAAAAATTTTCAGTTGGTGGCTGCTCCTGAAAATGGG
rJMFF012F15+ GGACGGGTAACAGTTGCATCAGTAAAAAATTTTCAGTTGGTGGCTGCTCCTGAAAATGGG
rJMFF021L04+ GGACGGGTAACAGTTGCATCAGTAAAAAATTTTCAGTTGGTGGCTGCTCCTGAAAATGGG
                      ____________________________________________________________
consensus GGACGGGTAACAGTTGCATCAGTAAAAAATTTTCAGTTGGTGGCTGCTCCTGAAAATGGG
 
. : . : . : . : . : . :
rJMSF053A07+ GTGAGTGGGCCAGAGCATGAGAAAGTCATTCTACAGTTTGGGAAAGTAGCCAAGGATGTA
rJMSF033G02+ GTGAGTGGGCCAGAGCATGAGAAAGTCATTCTACAGTTTGGGAAAGTAGCCAAGGATGTA
rJMSF026I23+ GTGAGTGGGCCAGAGCATGAGAAAGTCATTCTACAGTTTGGGAAAGTAGCCAAGGATGTA
rJMSF029O13+ GTGAGTGGGCCAGAGCATGAGAAAGTCATTCTACAGTTTGGGAAAGTAGCCAAGGATGTA
rJMFF012F15+ GTGAGTGGGCCAGAGCATGAGAAAGTCATTCTACAGTTTGGGAAAGTAGCCAAGGATGTA
rJMFF021L04+ GTGAGTGGGCCAGAGCATGAGAAAGTCATTCTACAGTTTGGGAAAGTAGCCAAGGATGTA
                      ____________________________________________________________
consensus GTGAGTGGGCCAGAGCATGAGAAAGTCATTCTACAGTTTGGGAAAGTAGCCAAGGATGTA
 
. : . : . : . : . : . :
rJMSF053A07+ TTTACTATGGATTTCCGCTACCCATTGTCAGCATTCCAGGCATTTGCCATCTGTCTTAGC
rJMSF033G02+ TTTACTATGGATTTCCGCTACCCATTGTCAGCATTCCAGGCATTTGCCATCTGTCTTAGC
rJMSF026I23+ TTTACTATGGATTTCCGCTACCCATTGTCAGCATTCCAGGCATTTGCCATCTGTCTTAGC
rJMSF029O13+ TTTACTATGGATTTCCGCTACCCATTGTCAGCATTCCAGGCATTTGCCATCTGTCTTAGC
rJMFF012F15+ TTTACTATGGATTTCCGCTACCCATTGTCAGCATTCCAGGCATTTGCCATCTGTCTTAGC
rJMFF021L04+ TTTACTATGGATTTCCGCTACCCATTGTCAGCATTCCAGGCATTTGCCATCTGTCTTAGC
                      ____________________________________________________________
consensus TTTACTATGGATTTCCGCTACCCATTGTCAGCATTCCAGGCATTTGCCATCTGTCTTAGC
 
. : . : . : . : . : . :
rJMSF053A07+ AGCTTTGATACCAAGATTGCTTGTGAATAACATGGATTCAGAGGAACGGAAGGAAAGATT
rJMSF033G02+ AGCTTTGATACCAAGATTGCTTGTGAATAACATGGATTCAGAGGAACGGAAGGAAAGATT
rJMSF026I23+ AGCTTTGATACCAAGATTGCTTGTGAATAACATGGATTCAGAGGAACGGAAGGAAAGATT
rJMSF029O13+ AGCTTTGATACCAAGATTGCTTGTGAATAACATGGATTCAGAGGAACGGAAGGAAAGATT
rJMFF012F15+ AGCTTTGATACCAAGATTGCTTGTGAATAACATGGATTCAGAGGAACGGAAGGAAAGATT
rJMFF021L04+ AGCTTTGATACCAAGATTGCTTGTGAATAACATGGATTCAGAGGAACGGAAGGAAAGATT
                      ____________________________________________________________
consensus AGCTTTGATACCAAGATTGCTTGTGAATAACATGGATTCAGAGGAACGGAAGGAAAGATT
 
. : . : . : . : . : . :
rJMSF053A07+ GTTTGGCAAAACCAAATAAACAGTCTGAAGTGGTTGCTTGCATTGCGGAGCTAGCTAGCA
rJMSF033G02+ GTTTGGCAAAACCAAATAAACAGTCTGAAGTGGTTGCTTGCATTGCGGAGCTAGCTAGCA
rJMSF026I23+ GTTTGGCAAAACCAAATAAACAGTCTGAAGTGGTTGCTTGCATTGCGGAGCTAGCTAGCA
rJMSF029O13+ GTTTGGCAAAACCAAATAAACAGTCTGAAGTGGTTGCTTGCATTGCGGAGCTAGCTAGCA
rJMFF012F15+ GTTTGGCAAAACCAAATAAACAGTCTGAAGTGGTTGCTTGCATTGCGGAGCTAGCTAGCA
rJMFF021L04+ GTTTGGCAAAACCAAATAAACAGTCTGAAGTGGTTGCTTGCATTGCGGAGCTAGCTAGCA
                      ____________________________________________________________
consensus GTTTGGCAAAACCAAATAAACAGTCTGAAGTGGTTGCTTGCATTGCGGAGCTAGCTAGCA
 
. : . : . : . : . : . :
rJMSF053A07+ TGATATGATGTTATTCACAATTTACCTTCAAATGTTTTCTTAATACAAAGACTAGTCAGT
rJMSF033G02+ TGATATGATGTTATTCACAATTTACCTTCAAATGTTTTCTTAATACAAAGACTAGTCAGT
rJMSF026I23+ TGATATGATGTTATTCACAATTTACCTTCAAATGTTTTCTTAATACAAAGACTAGTCAGT
rJMSF029O13+ TGATATGATGTTATTCACAATTTACCTTCAAATGTTTTCTTAATACAAAGACTAGTCAGT
rJMFF012F15+ TGATATGATGTTATTCACAATTTACCTTCAAATGTTTTCTTAATACAAAGACTAGTCAGT
rJMFF021L04+ TGATATGATGTTATTCACAATTTACCTTCAAATGTTTTCTTAATACAAAGACTAGTCAGT
                      ____________________________________________________________
consensus TGATATGATGTTATTCACAATTTACCTTCAAATGTTTTCTTAATACAAAGACTAGTCAGT
 
. : . : . : . : . : . :
rJMSF053A07+ GA-TGGTTGTATGTTTAATTAGGGGCATTGG
rJMSF033G02+ GA-TGGTTGTATGTTTAATTAGGGGCATTGGCTG
rJMSF026I23+ GA-TGGTTGTATGTTTAATTAGGGGCATTGGCTG
rJMSF029O13+ GACTGGTTGTATGTTTAATTAGGGGCATTGGCT
rJMFF012F15+ GA-TGGTTGTATGTTTAATTAGGGGCATTGGCTGTTGTTCATTAATTTGTCTACATTACT
rJMFF021L04+ GA-TGGTTGTATGTTTAATTAGGGGCATTGGCTGTTGTTCATTAATTTGTCTACATTACT
                      ____________________________________________________________
consensus GA-TGGTTGTATGTTTAATTAGGGGCATTGGCTGTTGTTCATTAATTTGTCTACATTACT