Contig 001087:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF016H18Sequence367007828 (2)808001087 (2)ref|XP_004230898.1|6e-128PREDICTED: probable receptor-like serine/threonine-protein kinase At4g34500 [So
JMSF015L24Sequence339007828 (2)732001087 (2)ref|XP_004230898.1|2e-118PREDICTED: probable receptor-like serine/threonine-protein kinase At4g34500 [So

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF016H18+ TTCGGATGAAAATTGCAATTGGGATTGC
                      ____________________________________________________________
consensus TTCGGATGAAAATTGCAATTGGGATTGC
 
. : . : . : . : . : . :
rJMSF015L24+ CATGAAGGTTTAGAACCCAAAGTTGTACATCGTGATGTAAA
rJMFF016H18+ TAGAGGACTTGCCTATTTGCATGAAGGTTTAGAACCCAAAGTTGTACATCGTGATGTAAA
                      ____________________________________________________________
consensus TAGAGGACTTGCCTATTTGCATGAAGGTTTAGAACCCAAAGTTGTACATCGTGATGTAAA
 
. : . : . : . : . : . :
rJMSF015L24+ GTCGAGTAATATTCTCTTGGATAGAAAATGGAATGCCAAAGTATCAGATTTTGGGCTCGC
rJMFF016H18+ GTCGAGTAATATTCTCTTGGATAGAAAATGGAATGCCAAAGTATCAGATTTTGGGCTCGC
                      ____________________________________________________________
consensus GTCGAGTAATATTCTCTTGGATAGAAAATGGAATGCCAAAGTATCAGATTTTGGGCTCGC
 
. : . : . : . : . : . :
rJMSF015L24+ CAAGCTGCTAGGACCAGAGAAAAGCTATGTGACCACCCGTGTTATGGGAACCTTTGGATA
rJMFF016H18+ CAAGCTGCTAGGACCAGAGAAAAGCTATGTGACCACCCGTGTTATGGGAACCTTTGGATA
                      ____________________________________________________________
consensus CAAGCTGCTAGGACCAGAGAAAAGCTATGTGACCACCCGTGTTATGGGAACCTTTGGATA
 
. : . : . : . : . : . :
rJMSF015L24+ TGTTTCACCTGACTATGCCAGTACTGGAATGCTTAATGAGGGCAGTGATGTGTATAGTTT
rJMFF016H18+ TGTTTCACCTGACTATGCCAGTACTGGAATGCTTAATGAGGGCAGTGATGTGTATAGTTT
                      ____________________________________________________________
consensus TGTTTCACCTGACTATGCCAGTACTGGAATGCTTAATGAGGGCAGTGATGTGTATAGTTT
 
. : . : . : . : . : . :
rJMSF015L24+ TGGTGTTTTGCTCATGGAAATTGTTACAGGAAGAAGTCCGGTTGATTATTCCAGACCACC
rJMFF016H18+ TGGTGTTTTGCTCATGGAAATTGTTACAGGAAGAAGTCCGGTTGATTATTCCAGACCACC
                      ____________________________________________________________
consensus TGGTGTTTTGCTCATGGAAATTGTTACAGGAAGAAGTCCGGTTGATTATTCCAGACCACC
 
. : . : . : . : . : . :
rJMSF015L24+ TGGAAAGATGAACTTAATTGACTGGTTTAAAGGAATGGTAGCAAATCGCCAGGCAGAGGA
rJMFF016H18+ TGGAAAGATGAACTTAATTGACTGGTTTAAAGGAATGGTAGCAAATCGCCAGGCAGAGGA
                      ____________________________________________________________
consensus TGGAAAGATGAACTTAATTGACTGGTTTAAAGGAATGGTAGCAAATCGCCAGGCAGAGGA
 
. : . : . : . : . : . :
rJMSF015L24+ ATTGGTTGATCCCTTAATTGAAGTACACCCTCCTCCAAGAGCCCTCAAACGGGTTTTGCT
rJMFF016H18+ ATTGGTTGATCCCTTAATTGAAGTACACCCTCCTCCAAGAGCCCTCAAACGGGTTTTGCT
                      ____________________________________________________________
consensus ATTGGTTGATCCCTTAATTGAAGTACACCCTCCTCCAAGAGCCCTCAAACGGGTTTTGCT
 
. : . : . : . : . : . :
rJMSF015L24+ GGTTTGCCTTCGGTGTATAGATATGGACGCCAACAAGCGACCAAAGATGGGACAAATAGC
rJMFF016H18+ GGTTTGCCTTCGGTGTATAGATATGGACGCCAACAAGCGACCAAAGATGGGACAAATAGC
                      ____________________________________________________________
consensus GGTTTGCCTTCGGTGTATAGATATGGACGCCAACAAGCGACCAAAGATGGGACAAATAGC
 
. : . : . : . : . : . :
rJMSF015L24+ CAGTATGCTAGAGGCTGATGAATTCCCTTTCCGTGCTGAGCATCGTTCCTCCAGAGAAAC
rJMFF016H18+ CAGTATGCTAGAGGCTGATGAATTCCCTTTCCGTGCTGAGCATCGTTCCTCCAGAGAAAC
                      ____________________________________________________________
consensus CAGTATGCTAGAGGCTGATGAATTCCCTTTCCGTGCTGAGCATCGTTCCTCCAGAGAAAC
 
. : . : . : . : . : . :
rJMSF015L24+ TGCTCCTCTCCATCCACGTGACTCGGGTAATAAAAGAGACCAGGTAACTCTCAAGAACGC
rJMFF016H18+ TGCTCCTCTCCATCCACGTGACTCGGGTAATAAAAGAGACCAGGTAACTCTCAAGAACGC
                      ____________________________________________________________
consensus TGCTCCTCTCCATCCACGTGACTCGGGTAATAAAAGAGACCAGGTAACTCTCAAGAACGC
 
. : . : . : . : . : . :
rJMSF015L24+ AGTGGCTGATGATGAGGAACAACAATCTGGCAATAGATGATAATTTGGGAAAGGGTGGTG
rJMFF016H18+ AGTGGCTGATGATGAGGAACAACAATCTGGCAATAGATGATAATTTGGGAAAGGGTGGTG
                      ____________________________________________________________
consensus AGTGGCTGATGATGAGGAACAACAATCTGGCAATAGATGATAATTTGGGAAAGGGTGGTG
 
. : . : . : . : . : . :
rJMSF015L24+ ATACGAGTTTTGTAGTGAATTTAATATATATGTATATTCTTTGCAGCAGTTTTTCAGTAA
rJMFF016H18+ ATACGAGTTTTGTAGTGAATTTAATATATATGTATATTCTTTGCAGCAGTTTTTCAGTAA
                      ____________________________________________________________
consensus ATACGAGTTTTGTAGTGAATTTAATATATATGTATATTCTTTGCAGCAGTTTTTCAGTAA
 
. : . : . : . : . : . :
rJMSF015L24+ TCCCCATTGTGTTACAGTAAAAACAAATATT
rJMFF016H18+ TCCCCATTGTGTTACAGTAAAAACAAATATTTGTATCTTGATCTGTGTTATAAAGCGTCG
                      ____________________________________________________________
consensus TCCCCATTGTGTTACAGTAAAAACAAATATTTGTATCTTGATCTGTGTTATAAAGCGTCG