Contig 001080:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF003N17Sequence605006472 (3)ref|XP_009587959.1|4e-52PREDICTED: histidinol dehydrogenase, chloroplastic-like isoform X1 [Nicotiana t758001080 (3)ref|XP_002523482.1|6e-114histidinol dehydrogenase, putative [Ricinus communis] gb|EEF38941.1| histidinol
JMFF014G12Sequence497006472 (3)ref|XP_009587959.1|2e-28PREDICTED: histidinol dehydrogenase, chloroplastic-like isoform X1 [Nicotiana t800001080 (3)gb|KDP34920.1|2e-123hypothetical protein JCGZ_09208 [Jatropha curcas]
JMSF017F06Sequence608006472 (3)ref|XP_009587959.1|1e-24PREDICTED: histidinol dehydrogenase, chloroplastic-like isoform X1 [Nicotiana t784001080 (3)gb|KDP34920.1|7e-133hypothetical protein JCGZ_09208 [Jatropha curcas]

Alignment

This contig is upended


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rJMSF017F06+ T
                      ____________________________________________________________
consensus T
 
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rJMSF017F06+ TCAGAATAGTGAGGNTATGGTTTCAATTGACATGCCTGCTGGACCATCAGAAGTTCTTGT
rJMFF014G12+ GGACCATCAGAAGTTCTTGT
                      ____________________________________________________________
consensus TCAGAATAGTGAGGNTATGGTTTCAATTGACATGCCTGCTGGACCATCAGAAGTTCTTGT
 
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rJMSF017F06+ CATAGCTGACAAGAATGCTACTCCAGCTCATGTTGCTGCAGATTTACTTTCTCAGGCAGA
rJMFF003N17+ CCAGCTCATGTTGCTGCAGATTTACTTTNTCAGGCAGA
rJMFF014G12+ CATAGCTGACAAGAATGCTACTCCAGCTCATGTTGCTGCAGATTTACTTTCTCAGGCAGA
                      ____________________________________________________________
consensus CATAGCTGACAAGAATGCTACTCCAGCTCATGTTGCTGCAGATTTACTTTCTCAGGCAGA
 
. : . : . : . : . : . :
rJMSF017F06+ ACATGGCCCAGATAGCCAGGTTGTTCTCGTAATTGTTGGGGACGATGTAAATCTAACTGC
rJMFF003N17+ ACATGGCCCAGATAGCCAGGTTGTTCTCGTAATTGTTGGGGACGATGTAAATCTAACTGC
rJMFF014G12+ ACATGGCCCAGATAGCCAGGTTGTTCTCGTAATTGTTGGGGACGATGTAAATCTAACTGC
                      ____________________________________________________________
consensus ACATGGCCCAGATAGCCAGGTTGTTCTCGTAATTGTTGGGGACGATGTAAATCTAACTGC
 
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rJMSF017F06+ TATTCAGGAGGAAATCAACCAGCAGTGTCGAAGCCTTCCAAGGGGAGAATTTGCTTCAAA
rJMFF003N17+ TATTCAGGAGGAAATCAACCAGCAGTGTCGAAGCCTTCCAAGGGGAGAATTTGCTTCAAA
rJMFF014G12+ TATTCAGGAGGAAATCAACCAGCAGTGTCGAAGCCTTCCAAGGGGAGAATTTGCTTCAAA
                      ____________________________________________________________
consensus TATTCAGGAGGAAATCAACCAGCAGTGTCGAAGCCTTCCAAGGGGAGAATTTGCTTCAAA
 
. : . : . : . : . : . :
rJMSF017F06+ AGCACTTGATCATAGTTTTACAGTACTTGCACGTGATATGATTGAGGCGATTGCTTTTTC
rJMFF003N17+ AGCACTTGATCATAGTTTTACAGTACTTGCACGTGATATGATTGAGGCGATTGCTTTTTC
rJMFF014G12+ AGCACTTGATCATAGTTTTACAGTACTTGCACGTGATATGATTGAGGCGATTGCTTTTTC
                      ____________________________________________________________
consensus AGCACTTGATCATAGTTTTACAGTACTTGCACGTGATATGATTGAGGCGATTGCTTTTTC
 
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rJMSF017F06+ AAACACGTATGCACCCGAGCATCTTATCATAAACGTAAAAGATGCTGAGAAGTGGGAGAG
rJMFF003N17+ AAACACGTATGCACCCGAGCATCTTATCATAAACGTAAAAGATGCTGAGAAGTGGGAGAG
rJMFF014G12+ AAACACGTATGCACCCGAGCATCTTATCATAAACGTAAAAGATGCTGAGAAGTGGGAGAG
                      ____________________________________________________________
consensus AAACACGTATGCACCCGAGCATCTTATCATAAACGTAAAAGATGCTGAGAAGTGGGAGAG
 
. : . : . : . : . : . :
rJMSF017F06+ TTTCATTGAGAATGCAGGTTCTGTGTTTTTAGGACAATGGACACCGGAGAGTGTAGGCGA
rJMFF003N17+ TTTCATTGAGAATGCAGGTTCTGTGTTTTTAGGACAATGGACACCGGAGAGTGTAGGCGA
rJMFF014G12+ TTTCATTGAGAATGCAGGTTCTGTGTTTTTAGGACAATGGACACCGGAGAGTGTAGGCGA
                      ____________________________________________________________
consensus TTTCATTGAGAATGCAGGTTCTGTGTTTTTAGGACAATGGACACCGGAGAGTGTAGGCGA
 
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rJMSF017F06+ TTATGCCAGCGGGACAAATCACGTCCTCCCAACTTACGGCTATGCACGGATGTATGGCGG
rJMFF003N17+ TTATGCCAGCGGGACAAATCACGTCCTCCCAACTTACGGCTATGCACGGATGTATGGCGG
rJMFF014G12+ TTATGCCAGCGGGACAAATCACGTCCTCCCAACTTACGGCTATGCACGGATGTATGGCGG
                      ____________________________________________________________
consensus TTATGCCAGCGGGACAAATCACGTCCTCCCAACTTACGGCTATGCACGGATGTATGGCGG
 
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rJMSF017F06+ GGTGTCTTTAGACTCATTCCTTAAGTACATCACGGTGCAGTCTTTGACTGAGGAAGGGCT
rJMFF003N17+ GGTGTCTTTAGACTCATTCCTTAAGTACATCACGGTGCAGTCTTTGACTGAGGAAGGGCT
rJMFF014G12+ GGTGTCTTTAGACTCATTCCTTAAGTACATCACGGTGCAGTCTTTGACTGAGGAAGGGCT
                      ____________________________________________________________
consensus GGTGTCTTTAGACTCATTCCTTAAGTACATCACGGTGCAGTCTTTGACTGAGGAAGGGCT
 
. : . : . : . : . : . :
rJMSF017F06+ GAAAAACCTAGGGCCTTGTGTGGCCACCATGGCTGATGTTGAAGGCTTGGAAGCCCACAA
rJMFF003N17+ GAAAAACCTAGGGCCTTGTGTGGCCACCATGGCTGATGTTGAAGGCTTGGAAGCCCACAA
rJMFF014G12+ GAAAAACCTAGGGCCTTGTGTGGCCACCATGGCTGATGTTGAAGGCTTGGAAGCCCACAA
                      ____________________________________________________________
consensus GAAAAACCTAGGGCCTTGTGTGGCCACCATGGCTGATGTTGAAGGCTTGGAAGCCCACAA
 
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rJMSF017F06+ GAGGGCAGTCACCCTCAGGCTGCAGGACATTGAAGCAAGACAAGCTTCTCGTGCAAGATA
rJMFF003N17+ GAGGGCAGTCACCCTCAGGCTGCAGGACATTGAAGCAAGACAAGCTTCTCGTGCAAGATA
rJMFF014G12+ GAGGGCAGTCACCCTCAGGCTGCAGGACATTGAAGCAAGACAAGCTTCTCGTGCAAGATA
                      ____________________________________________________________
consensus GAGGGCAGTCACCCTCAGGCTGCAGGACATTGAAGCAAGACAAGCTTCTCGTGCAAGATA
 
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rJMSF017F06+ ATAAGAAGACGAGATGGATTCAAGTGTAAACTTACAGACACAGTGGAGTGAAGTTTTGTT
rJMFF003N17+ ATAAGAAGACGAGATGGATTCAAGTGTAAACTTACAGACACAGTGGAGTGAAGTTTTGTT
rJMFF014G12+ ATAAGAAGACGAGATGGATTCAAGTGTAAACTTACAGACACAGTGGAGTGAAGTTTTGTT
                      ____________________________________________________________
consensus ATAAGAAGACGAGATGGATTCAAGTGTAAACTTACAGACACAGTGGAGTGAAGTTTTGTT
 
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rJMSF017F06+ TGTTCATTTCTTGTCTACATACAATTGCCATTCCTAAGATGTTTTAGTGTTTTACCATGA
rJMFF003N17+ TGTTCATTTCTTGTCTACATACAATTGCCATTCCTAAGATGTTTTAGTGTTTTACCATGA
rJMFF014G12+ TGTTCATTTCTTGTCTACATACAATTGCCATTCCTAAGATGTTTTAGTGTTTTACCATGA
                      ____________________________________________________________
consensus TGTTCATTTCTTGTCTACATACAATTGCCATTCCTAAGATGTTTTAGTGTTTTACCATGA
 
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rJMSF017F06+ ACT
rJMFF003N17+ ACTTATATATACAAGTAAAAATGTCTGCGTTCTAGTTTGGTTCACAGTTCATAAATAGCA
rJMFF014G12+ ACTTATATATACAAGTAAAAATGTCTGCGTTCTAGTTTGGTTCACAGTTCATAAATAGCA
                      ____________________________________________________________
consensus ACTTATATATACAAGTAAAAATGTCTGCGTTCTAGTTTGGTTCACAGTTCATAAATAGCA