Contig 001072:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF013H15Sequence420019507ref|XP_009771235.1|2e-51PREDICTED: auxin transporter-like protein 1 [Nicotiana sylvestris]692001072 (3)gb|AAR18696.1|2e-81auxin transporter protein 1 [Populus tomentosa]
JMFF027O19Sequence318010626 (2)664001072 (3)gb|AAR18696.1|2e-75auxin transporter protein 1 [Populus tomentosa]
JMSF013C03Sequence320010626 (2)790001072 (3)gb|AAR18696.1|3e-104auxin transporter protein 1 [Populus tomentosa]

Alignment

This contig is upended


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rJMSF013C03+                                                    GTCTTCACATTAACGATC
                      ____________________________________________________________
consensus                                                       GTCTTCACATTAACGATC
 
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rJMSF013C03+          CCATCTGCTGCTGCCATGTATTGGGCCTACGGTGATCAGCTTCTCAGTAATGCCAATGCG
                      ____________________________________________________________
consensus             CCATCTGCTGCTGCCATGTATTGGGCCTACGGTGATCAGCTTCTCAGTAATGCCAATGCG
 
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rJMSF013C03+          TTTGCACTCCTTCCCCAAAACGGTTTTCGCGATGCAGCTGTTGTTCTTATGCTAATCCAC
rJMFF027O19+                                                                  CCAC
rJMFF013H15+                                      GCGATGCAGCTGTTGTTCTTATGCTAATCCAC
                      ____________________________________________________________
consensus             TTTGCACTCCTTCCCCAAAACGGTTTTCGCGATGCAGCTGTTGTTCTTATGCTAATCCAC
 
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rJMSF013C03+          CAGTTCATAACGTTCGGATTTGCTTGCACGCCACTGTACTTTGTTTGGGAGAAAGTGATA
rJMFF027O19+          CAGTTCATAACGTTCGGATTTGCTTGCACGCCACTGTACTTTGTTTGGGAGAAAGTGATA
rJMFF013H15+          CAGTTCATAACGTTCGGATTTGCTTGCACGCCACTGTACTTTGTTTGGGAGAAAGTGATA
                      ____________________________________________________________
consensus             CAGTTCATAACGTTCGGATTTGCTTGCACGCCACTGTACTTTGTTTGGGAGAAAGTGATA
 
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rJMSF013C03+          GGGATGCACGACACGAAGAGCATATGTTTAAGGGCACTAGCGAGGTTACCGGTGGTGATA
rJMFF027O19+          GGGATGCACGACACGAAGAGCATATGTTTAAGAGCACTAGCGAGGTTACCGGTGGTGATA
rJMFF013H15+          GGGATGCACGACACGAAGAGCATATGTTTAAGGGCACTAGCGAGGTTACCGGTGGTGATA
                      ____________________________________________________________
consensus             GGGATGCACGACACGAAGAGCATATGTTTAAGGGCACTAGCGAGGTTACCGGTGGTGATA
 
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rJMSF013C03+          CCGATATGGTTCTTGGCCATCATATTTCCCTTCTTCGGGCCTATCAACTCCGCTGTGGGA
rJMFF027O19+          CCGATATGGTTCTTGGCCATCATATTTCCCTTCTTCGGGCCTATCAACTCCGCTGTGGGA
rJMFF013H15+          CCGATATGGTTCTTGGCCATCATATTTCCCTTCTTCGGGCCTATCAACTCCGCTGTGGGA
                      ____________________________________________________________
consensus             CCGATATGGTTCTTGGCCATCATATTTCCCTTCTTCGGGCCTATCAACTCCGCTGTGGGA
 
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rJMSF013C03+          GCACTTCTAGTTAGCTTCACCGTCTACATCATCCCCGCCCTCGCACACATGGTAACATAC
rJMFF027O19+          GCACTTCTAGTTAGCTTCACCGTCTACATCATCCCCGCCCTCGCACACATGGTAACATAC
rJMFF013H15+          GCACTTCTAGTTAGCTTCACCGTCTACATCATCCCCGCCCTCGCACACATGGTAACATAC
                      ____________________________________________________________
consensus             GCACTTCTAGTTAGCTTCACCGTCTACATCATCCCCGCCCTCGCACACATGGTAACATAC
 
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rJMSF013C03+          AGAAAGGCGTCGGCCCGGCAGAATGCAGCAGAGAAACCCCCGTTCTTCCTACCGAGCTGG
rJMFF027O19+          AGAAAGGCGTCGGCCCGGCAGAATGCAGCAGAGAAACCCCCGTTCTTCCTACCGAGCTGG
rJMFF013H15+          AGAAAGGCGTCGGCCCGGCAGAATGCAGCAGAGAAACCCCCGTTCTTCCTACCGAGCTGG
                      ____________________________________________________________
consensus             AGAAAGGCGTCGGCCCGGCAGAATGCAGCAGAGAAACCCCCGTTCTTCCTACCGAGCTGG
 
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rJMSF013C03+          ACCGCTGTGTATGTATTGAACGCATTCGTTGTGGTTTGGGTTTTAGTCGTCGGGTTTGGA
rJMFF027O19+          ACCGCTGTGTATGTATTGAACGCATTCGTTGTGGTTTGGGTTTTAGTCGTCGGGTTTGGA
rJMFF013H15+          ACCGCTGTGTATGTATTGAACGCATTCGTTGTGGTTTGGGTTTTAGTCGTCGGGTTTGGA
                      ____________________________________________________________
consensus             ACCGCTGTGTATGTATTGAACGCATTCGTTGTGGTTTGGGTTTTAGTCGTCGGGTTTGGA
 
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rJMSF013C03+          TTCGGGGGGTGGGCAAGCATGAACAACTTCATCAAGCAAGTCGACACCTTCGGGCTATTC
rJMFF027O19+          TTCGGGGGGTGGGCAAGCATGAACAACTTCATCAAGCAAGTCGACACCTTCGGGCTATTC
rJMFF013H15+          TTCGGGGGGTGGGCAAGCATGAACAACTTCATCAAGCAAGTCGACACCTTCGGGCTATTC
                      ____________________________________________________________
consensus             TTCGGGGGGTGGGCAAGCATGAACAACTTCATCAAGCAAGTCGACACCTTCGGGCTATTC
 
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rJMSF013C03+          GCGAAATGCTATCAGTGCAAGCACAAGTCTCCAGAAACCAATCACCATACATAGAAGGAA
rJMFF027O19+          GCGAAATGCTATCAGTGCAAGCACAAGTCTCCAGAAACCAATCACCATACATAGAAGGAA
rJMFF013H15+          GCGAAATGCTATCAGTGCAAGCACAAGTCTCCAGAAACCAATCACCATACATAGAAGGAA
                      ____________________________________________________________
consensus             GCGAAATGCTATCAGTGCAAGCACAAGTCTCCAGAAACCAATCACCATACATAGAAGGAA
 
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rJMSF013C03+          GATCAGAAGATTTTCTTCATCACAGAAGATTTTAATGCTTTTTCTGACTTTCTGTTGGGG
rJMFF027O19+          GATCAGAAGATTTTCTTCATCACAGAAGATTTTAATGCTTTTTCTGACTTTCTGTTGGGG
rJMFF013H15+          GATCAGAAGATTTTCTTCATCACAGAAGATTTTAATGCTTTTTCTGACTTTCTGTTGGGG
                      ____________________________________________________________
consensus             GATCAGAAGATTTTCTTCATCACAGAAGATTTTAATGCTTTTTCTGACTTTCTGTTGGGG
 
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rJMSF013C03+          GTTAATGTTGTAGTATCTTGTGTGTTTCTGTTTATGTTTTTGTGTTCAGAATATGTATAA
rJMFF027O19+          GTTAATGTTGTAGTATCTTGTGTGTTTCTGTTTATGTTTTTGTGTTCAGAATATGTATAA
rJMFF013H15+          GTTAATGTTGTAGTATCTTGTGTGTTTCTGTTTATGTTTTTGTGTTCAGAATATGTATAA
                      ____________________________________________________________
consensus             GTTAATGTTGTAGTATCTTGTGTGTTTCTGTTTATGTTTTTGTGTTCAGAATATGTATAA
 
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rJMSF013C03+          AGATGTATAAGAAGATGAAATGGTGACAGTTTCTTAGTAGGCTCAGAAT           
rJMFF027O19+          AGATGTATAAGAAGATGAAATGGTGACAGTTTCTTAGTAGGCTCAGAATTGTCTTTTTGC
rJMFF013H15+          AGATGTATAAGAAGATGAAATGGTGACAGTTTCTTAGTAGGCTCAGAATTGTCTTTTTGC
                      ____________________________________________________________
consensus             AGATGTATAAGAAGATGAAATGGTGACAGTTTCTTAGTAGGCTCAGAATTGTCTTTTTGC