clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF005B07 | Sequence | 430 | 001070 (8) | ref|XP_010251223.1| | 2e-43 | PREDICTED: iron-sulfur cluster assembly protein 1-like [Nelumbo nucifera] | 641 | 001070 (8) | ref|XP_010251223.1| | 2e-77 | PREDICTED: iron-sulfur cluster assembly protein 1-like [Nelumbo nucifera] |
JMFF012O22 | Sequence | 561 | 001070 (8) | ref|XP_008374426.1| | 7e-84 | PREDICTED: iron-sulfur cluster assembly protein 1-like [Malus domestica] | 742 | 001070 (8) | ref|XP_008374426.1| | 1e-92 | PREDICTED: iron-sulfur cluster assembly protein 1-like [Malus domestica] |
JMFF025M05 | Sequence | 549 | 001070 (8) | ref|XP_008374426.1| | 3e-80 | PREDICTED: iron-sulfur cluster assembly protein 1-like [Malus domestica] | 717 | 001070 (8) | ref|XP_008374426.1| | 8e-93 | PREDICTED: iron-sulfur cluster assembly protein 1-like [Malus domestica] |
JMFN012J04 | Sequence | 604 | 001070 (8) | ref|XP_008374426.1| | 1e-90 | PREDICTED: iron-sulfur cluster assembly protein 1-like [Malus domestica] | |||||
JMFN015A16 | Sequence | 628 | 001070 (8) | ref|XP_008374426.1| | 3e-94 | PREDICTED: iron-sulfur cluster assembly protein 1-like [Malus domestica] |
This contig is upended
. : . : . : . : . : . :
JMFN015A16+ TTCAGGCAAACTTAATTAGCATCAGCAGCTTTCTCCAGCGCCACTGCTT
JMFN012J04+ CCAGCGCCACTGCTT
____________________________________________________________
consensus TTCAGGCAAACTTAATTAGCATCAGCAGCTTTCTCCAGCGCCACTGCTT
. : . : . : . : . : . :
rJMFF025M05- GCCTCATAATCCTTCACCGCTGCCTTTATTG
rJMFF005B07- CCTCATAATCCTTCACCGCCGCCTTTATTG
JMFN015A16+ GTTCTGTTGGAGATGATTTTGCTCGCTTCGCCTCATAATCCTTCACCGCTGCCTTTATTG
JMFN012J04+ GTTCTGTTGGAGATGATTTTGCTCGCTTCGCCTCATAATCCTTCACCGCTGCCTTTATTG
JMFF012O22+ CTTCACCGCTGCCTTTATTG
JMFF025M05+ CTTTATTG
rJMFF012O22- GCCTCATAATCCTTCACCGCTGCCTTTATTG
____________________________________________________________
consensus GTTCTGTTGGAGATGATTTTGCTCGCTTCGCCTCATAATCCTTCACCGCTGCCTTTATTG
. : . : . : . : . : . :
rJMFF025M05- CATCCTCTGCCAGCATGCTACAGTGGAGCTTAACGGGAGGGAGGGAGAGATGCTTGGCAA
rJMFF005B07- CATCCTCGGCCAGCATGCTACAGTGGAGCTTAACGGGAGGGAGGGAAAGATGCTTGGCAA
JMFN015A16+ CATCCTCTGCCAGCATGCTACAGTGGAGCTTAACGGGAGGGAGGGAGAGATGCTTGGCAA
JMFN012J04+ CATCCTCTGCCAGCATGCTACAGTGGAGCTTAACGGGAGGGAGGGAGAGATGCTTGGCAA
JMFF012O22+ CATCCTCTGCCAGCATGNTACAGTGGAGCTTAACGGGAGGGAGGGAGAGATGCTTGGCAA
JMFF025M05+ CATCCTCTGCCAGCATGCTACAGTGGAGCTTAACGGGAGGGAGGGAGAGATGCTTGGCAA
rJMFF012O22- CATCCTCTGCCAGCATGCTACAGTGGAGCTTAACGGGAGGGAGGGAGAGATGCTTGGCAA
____________________________________________________________
consensus CATCCTCTGCCAGCATGCTACAGTGGAGCTTAACGGGAGGGAGGGAGAGATGCTTGGCAA
. : . : . : . : . : . :
rJMFF025M05- TTTCTGTATTCTTGATGGTTAGAACCTCCTCCATCTGTTTCCCCTTCACCCACTCTGTAG
rJMFF005B07- TTTCCGTATTCTTGATGGTTAGAACCTCCTCCATCTGTTTCCCCTTCACCCACTCTGTTG
JMFN015A16+ TTTCTGTATTCTTGATGGTTAGAACCTCCTCCATCTGTTTCCCCTTCACCCACTCTGTAG
JMFN012J04+ TTTCTGTATTCTTGATGGTTAGAACCTCCTCCATCTGTTTCCCCTTCACCCACTCTGTAG
JMFF012O22+ TTTCTGTATTCTTGATGGTTAGAACCTCCTCCATCTGTTTCCCCTTCACCCACTCTGTAG
JMFF025M05+ TTTCTGTATTCTTGATGGTTAGAACCTCCTCCATCTGTTTCCCCTTCACCCACTCTGTAG
rJMFF012O22- TTTCTGTATTCTTGATGGTTAGAACCTCCTCCATCTGTTTCCCCTTCACCCACTCTGTAG
____________________________________________________________
consensus TTTCTGTATTCTTGATGGTTAGAACCTCCTCCATCTGTTTCCCCTTCACCCACTCTGTAG
. : . : . : . : . : . :
rJMFF025M05- CTACAGAGGAGGAGGCGATAGCGGAACCACAGCCGAAGGTCTTGAAGCAGGCGTCAACGA
JMFF005B07+ GAGGAGGAGGCGATGGCGGAACCGCAGCCGAAGGTCTTGAAGCAGGCGTCAACGA
rJMFF005B07- CTACGGAGGAGGAGGCGATGGCGGAACCGCAGCCGAAGGTCTTGAAGCAGGCGTCAACGA
JMFN015A16+ CTACAGAGGAGGAGGCGATAGCGGAACCACAGCCGAAGGTCTTGAAGCAGGCGTCAACGA
JMFN012J04+ CTACAGAGGAGGAGGCGATAGCGGAACCACAGCCGAAGGTCTTGAAGCAGGCGTCAACGA
JMFF012O22+ CTACAGAGGAGGAGGCGATAGCGGAACCACAGCCGAAGGTCTTGAAGCAGGCGTCAACGA
JMFF025M05+ CTACAGAGGAGGAGGCGATAGCGGAACCACAGCCGAAGGTCTTGAAGCAGGCGTCAACGA
rJMFF012O22- CTACAGAGGAGGAGGCGATAGCGGAACCACAGCCGAAGGTCTTGAAGCAGGCGTCAACGA
____________________________________________________________
consensus CTACAGAGGAGGAGGCGATAGCGGAACCACAGCCGAAGGTCTTGAAGCAGGCGTCAACGA
. : . : . : . : . : . :
rJMFF025M05- TCTTCCCACTCTCATCATCGACATTAATCTGAAGCTTCATCACGTCGCCGCAGGCCGGGG
JMFF005B07+ TCTTCCCACTTTCATCATCGACCTTAATCTGAAGCTTCATCACGTCGCCGCAGGCCGGGG
rJMFF005B07- TCTTCCCACTTTCATCATCGACCTTAATCTGAAGCTTCATCACGTCGCCGCAGGCCGGGG
JMFN015A16+ TCTTCCCACTCTCATCATCGACCTTAATCTGAAGCTTCATCACGTCGCCGCAGGCCGGGG
JMFN012J04+ TCTTCCCACTCTCATCATCGACCTTAATCTGAAGCTTCATCACGTCGCCGCAGGCCGGGG
JMFF012O22+ TCTTCCCACTCTCATCATCGACATTAATCTGAAGCTTCATCACGTCGCCGCAGGCCGGGG
JMFF025M05+ TCTTCCCACTCTCATCATNGACATTAATCTGAAGCTTCATCACGTCGCCGCAGGCCGGGG
rJMFF012O22- TCTTCCCACTCTCATCATCGACATTAATCTGAAGCTTCATCACGTCGCCGCAGGCCGGGG
____________________________________________________________
consensus TCTTCCCACTCTCATCATCGACCTTAATCTGAAGCTTCATCACGTCGCCGCAGGCCGGGG
. : . : . : . : . : . :
rJMFF025M05- CGCCGACCAATCCGGTGCCGACGGTGGGGTCGTTCTTGTCGAAGGAGCCGACATTGCGGG
JMFF005B07+ CGCCGACCAACCCAGTACCGACGGTGGGGTCGTTCTTGTCAAAGGAGCCGACATTGCGGG
rJMFF005B07- CGCCGACCAACCCAGTACCGACGGTGGGGTCGTTCTTGTCAAAGGAGCCGACATTGCGGG
JMFN015A16+ CGCCGACCAATCCGGTGCCGACGGTGGGGTCGTTCTTGTCGAAGGAGCCGACATTGCGGG
JMFN012J04+ CGCCGACCAATCCGGTGCCGACGGTGGGGTCGTTCTTGTCGAAGGAGCCGACATTGCGGG
JMFF012O22+ CGCCGACCAATCCGGTGCCGACGGTGGGGTCGTTCTTGTCGAAGGAGCCGACATTGCGGG
JMFF025M05+ NGCCGACCAATCCGGTGCCGACGGTGGGGTCGTTCTTGTCGAAGGAGCCGACATTGCGGG
rJMFF012O22- CGCCGACCAATCCGGTGCCGACGGTGGGGTCGTTCTTGTCGAAGGAGCCGACATTGCGGG
____________________________________________________________
consensus CGCCGACCAATCCGGTGCCGACGGTGGGGTCGTTCTTGTCGAAGGAGCCGACATTGCGGG
. : . : . : . : . : . :
rJMFF025M05- GGTT-GTTGTAGTGGTCCACCACCCTCTCGTGGTAGAGCCGCGGCAGCCCCGCCGTGGCC
JMFF005B07+ GGTT-GTTGTAGTGGTCCACCACCCTCTCGTGGTAGAGCCGCGGCA
rJMFF005B07- GGTTGGTTGTAGTGGTCCACCACCCTCTCGTGGTAGAGCCGCGGCAGCCCCGCCGTGGCC
JMFN015A16+ GGTT-GTTGTAGTGGTCCACCACCCTCTCGTGGTAGAGCCGCGGCAGCCCCGCCGTGGCC
JMFN012J04+ GGTT-GTTGTAGTGGTCCACCACCCTCTCGTGGTAGAGCCGCGGCAGCCCCGCCGTGGCC
JMFF012O22+ GGTT-GTTGTAGTGGTCCACCACCCTCTCGTGGTAGAGCCGCGGCAGCCCCGCCGTGGCC
JMFF025M05+ GGTT-GTTGTAGTGGTCCACCACCCTCTCGTGGTAGAGCCGCGGCAGCCCCGCCGTGGCC
rJMFF012O22- GGTT-GTTGTAGTGGTCCACCACCCTCTCGTGGTAGAGCCGCGGCAGCCCCGCCGTGGCC
____________________________________________________________
consensus GGTT-GTTGTAGTGGTCCACCACCCTCTCGTGGTAGAGCCGCGGCAGCCCCGCCGTGGCC
. : . : . : . : . : . :
rJMFF025M05- CTCTCC---GCCGCCGCAACTCGCGGCGCCAGCCCTAGAACTCTGTTGGCGGCAAGCTTC
rJMFF005B07- CTCTCCGCCGCCGCCGCAACTCGCGGCGCCAGCCCTAGAACTCTGTTGCCCGCAAGCTTC
JMFN015A16+ CTCTCC---GCCGCCGCAACTCGCGGCGCCAGCCCTAGAACTCTGTTGGCGGCAAGCTTC
JMFN012J04+ CTCTCC---GCCGCCGCAACTCGCGGCGCCAGCCCTAGAACTCTGTTGGCGGCAAGCTTC
JMFF012O22+ CTCTCC---GCCGCCGCAACTCGCGGCGCCAGCCCTAGAACTCTGTTGGCGGCAAGCTTC
JMFF025M05+ CTCTCC---GCCGCCGCAACTCGCGGCGCCAGCCCTAGAACTCTGTTGGCGGCAAGCTTC
rJMFF012O22- CTCTCC---GCCGCCGCAACTCGCGGCGCCAGCCCTAGAACTCTGTTGGCGGCAAGCTTC
____________________________________________________________
consensus CTCTCC---GCCGCCGCAACTCGCGGCGCCAGCCCTAGAACTCTGTTGGCGGCAAGCTTC
. : . : . : . : . : . :
rJMFF025M05- AACATTCTTGCCGAATTAATCGTTGATAATTTCGGGAAATTCGCGTTAACGATTTCTTTG
rJMFF005B07- AACATTCTTGCGGAATTGGTCGTTGATAATTT
JMFN015A16+ AACATTCTTGCCGAATTAATCGTTGATAATTTCGGGAAATTCGCGTTAACGATTTCTTTG
JMFN012J04+ AACATTCTTGCCGAATTAATCGTTGATAATTTCGGGAAATTCGCGTTAACGATTTCTTTG
JMFF012O22+ AACATTCTTGCCGAATTAATCGTTGATAATTTCGGGAAATTCGCGTTAACGATTTCTTTG
JMFF025M05+ AACATTCTTGCCGAATTAATCGTTGATAATTTCGGGAAATTCGCGTTAACGATTTCTTTG
rJMFF012O22- AACATTCTTGCCGAATTAATCGTTGATAATTTCGGGAAATTCGCGTTAACGATTTCTTTG
____________________________________________________________
consensus AACATTCTTGCCGAATTAATCGTTGATAATTTCGGGAAATTCGCGTTAACGATTTCTTTG
. : . : . : . : . : . :
rJMFF025M05- TAGGATTGAAATTGTTTGTTTGATTTCTGGGAGATA
JMFN015A16+ TAGGATTGAAATTGTTTGTTTGATTTCTGGGAGATAATTTTAG
JMFN012J04+ TAGGATTGAAATTGTTTGTTTGATTTCTGGGAGATAATTTTAGGTTAGTTGAA
JMFF012O22+ TAGGATTGAAATTGTTTGTTTG
JMFF025M05+ TAGGATTGAAATTGTTTGTTTG
rJMFF012O22- TAGGATTGAAATTGTTTGTTTGATTTCTGGGAGATAATTTTAGGNTAGTTGAAGTGCGTA
____________________________________________________________
consensus TAGGATTGAAATTGTTTGTTTGATTTCTGGGAGATAATTTTAGGTTAGTTGAAGTGCGTA