Contig 001070:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF005B07Sequence430001070 (8)ref|XP_010251223.1|2e-43PREDICTED: iron-sulfur cluster assembly protein 1-like [Nelumbo nucifera]641001070 (8)ref|XP_010251223.1|2e-77PREDICTED: iron-sulfur cluster assembly protein 1-like [Nelumbo nucifera]
JMFF012O22Sequence561001070 (8)ref|XP_008374426.1|7e-84PREDICTED: iron-sulfur cluster assembly protein 1-like [Malus domestica]742001070 (8)ref|XP_008374426.1|1e-92PREDICTED: iron-sulfur cluster assembly protein 1-like [Malus domestica]
JMFF025M05Sequence549001070 (8)ref|XP_008374426.1|3e-80PREDICTED: iron-sulfur cluster assembly protein 1-like [Malus domestica]717001070 (8)ref|XP_008374426.1|8e-93PREDICTED: iron-sulfur cluster assembly protein 1-like [Malus domestica]
JMFN012J04Sequence604001070 (8)ref|XP_008374426.1|1e-90PREDICTED: iron-sulfur cluster assembly protein 1-like [Malus domestica]
JMFN015A16Sequence628001070 (8)ref|XP_008374426.1|3e-94PREDICTED: iron-sulfur cluster assembly protein 1-like [Malus domestica]

Alignment

This contig is upended


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JMFN015A16+                      TTCAGGCAAACTTAATTAGCATCAGCAGCTTTCTCCAGCGCCACTGCTT
JMFN012J04+                                                        CCAGCGCCACTGCTT
                      ____________________________________________________________
consensus                        TTCAGGCAAACTTAATTAGCATCAGCAGCTTTCTCCAGCGCCACTGCTT
 
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rJMFF025M05-                                       GCCTCATAATCCTTCACCGCTGCCTTTATTG
rJMFF005B07-                                        CCTCATAATCCTTCACCGCCGCCTTTATTG
JMFN015A16+           GTTCTGTTGGAGATGATTTTGCTCGCTTCGCCTCATAATCCTTCACCGCTGCCTTTATTG
JMFN012J04+           GTTCTGTTGGAGATGATTTTGCTCGCTTCGCCTCATAATCCTTCACCGCTGCCTTTATTG
JMFF012O22+                                                   CTTCACCGCTGCCTTTATTG
JMFF025M05+                                                               CTTTATTG
rJMFF012O22-                                       GCCTCATAATCCTTCACCGCTGCCTTTATTG
                      ____________________________________________________________
consensus             GTTCTGTTGGAGATGATTTTGCTCGCTTCGCCTCATAATCCTTCACCGCTGCCTTTATTG
 
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rJMFF025M05-          CATCCTCTGCCAGCATGCTACAGTGGAGCTTAACGGGAGGGAGGGAGAGATGCTTGGCAA
rJMFF005B07-          CATCCTCGGCCAGCATGCTACAGTGGAGCTTAACGGGAGGGAGGGAAAGATGCTTGGCAA
JMFN015A16+           CATCCTCTGCCAGCATGCTACAGTGGAGCTTAACGGGAGGGAGGGAGAGATGCTTGGCAA
JMFN012J04+           CATCCTCTGCCAGCATGCTACAGTGGAGCTTAACGGGAGGGAGGGAGAGATGCTTGGCAA
JMFF012O22+           CATCCTCTGCCAGCATGNTACAGTGGAGCTTAACGGGAGGGAGGGAGAGATGCTTGGCAA
JMFF025M05+           CATCCTCTGCCAGCATGCTACAGTGGAGCTTAACGGGAGGGAGGGAGAGATGCTTGGCAA
rJMFF012O22-          CATCCTCTGCCAGCATGCTACAGTGGAGCTTAACGGGAGGGAGGGAGAGATGCTTGGCAA
                      ____________________________________________________________
consensus             CATCCTCTGCCAGCATGCTACAGTGGAGCTTAACGGGAGGGAGGGAGAGATGCTTGGCAA
 
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rJMFF025M05-          TTTCTGTATTCTTGATGGTTAGAACCTCCTCCATCTGTTTCCCCTTCACCCACTCTGTAG
rJMFF005B07-          TTTCCGTATTCTTGATGGTTAGAACCTCCTCCATCTGTTTCCCCTTCACCCACTCTGTTG
JMFN015A16+           TTTCTGTATTCTTGATGGTTAGAACCTCCTCCATCTGTTTCCCCTTCACCCACTCTGTAG
JMFN012J04+           TTTCTGTATTCTTGATGGTTAGAACCTCCTCCATCTGTTTCCCCTTCACCCACTCTGTAG
JMFF012O22+           TTTCTGTATTCTTGATGGTTAGAACCTCCTCCATCTGTTTCCCCTTCACCCACTCTGTAG
JMFF025M05+           TTTCTGTATTCTTGATGGTTAGAACCTCCTCCATCTGTTTCCCCTTCACCCACTCTGTAG
rJMFF012O22-          TTTCTGTATTCTTGATGGTTAGAACCTCCTCCATCTGTTTCCCCTTCACCCACTCTGTAG
                      ____________________________________________________________
consensus             TTTCTGTATTCTTGATGGTTAGAACCTCCTCCATCTGTTTCCCCTTCACCCACTCTGTAG
 
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rJMFF025M05-          CTACAGAGGAGGAGGCGATAGCGGAACCACAGCCGAAGGTCTTGAAGCAGGCGTCAACGA
JMFF005B07+                GAGGAGGAGGCGATGGCGGAACCGCAGCCGAAGGTCTTGAAGCAGGCGTCAACGA
rJMFF005B07-          CTACGGAGGAGGAGGCGATGGCGGAACCGCAGCCGAAGGTCTTGAAGCAGGCGTCAACGA
JMFN015A16+           CTACAGAGGAGGAGGCGATAGCGGAACCACAGCCGAAGGTCTTGAAGCAGGCGTCAACGA
JMFN012J04+           CTACAGAGGAGGAGGCGATAGCGGAACCACAGCCGAAGGTCTTGAAGCAGGCGTCAACGA
JMFF012O22+           CTACAGAGGAGGAGGCGATAGCGGAACCACAGCCGAAGGTCTTGAAGCAGGCGTCAACGA
JMFF025M05+           CTACAGAGGAGGAGGCGATAGCGGAACCACAGCCGAAGGTCTTGAAGCAGGCGTCAACGA
rJMFF012O22-          CTACAGAGGAGGAGGCGATAGCGGAACCACAGCCGAAGGTCTTGAAGCAGGCGTCAACGA
                      ____________________________________________________________
consensus             CTACAGAGGAGGAGGCGATAGCGGAACCACAGCCGAAGGTCTTGAAGCAGGCGTCAACGA
 
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rJMFF025M05-          TCTTCCCACTCTCATCATCGACATTAATCTGAAGCTTCATCACGTCGCCGCAGGCCGGGG
JMFF005B07+           TCTTCCCACTTTCATCATCGACCTTAATCTGAAGCTTCATCACGTCGCCGCAGGCCGGGG
rJMFF005B07-          TCTTCCCACTTTCATCATCGACCTTAATCTGAAGCTTCATCACGTCGCCGCAGGCCGGGG
JMFN015A16+           TCTTCCCACTCTCATCATCGACCTTAATCTGAAGCTTCATCACGTCGCCGCAGGCCGGGG
JMFN012J04+           TCTTCCCACTCTCATCATCGACCTTAATCTGAAGCTTCATCACGTCGCCGCAGGCCGGGG
JMFF012O22+           TCTTCCCACTCTCATCATCGACATTAATCTGAAGCTTCATCACGTCGCCGCAGGCCGGGG
JMFF025M05+           TCTTCCCACTCTCATCATNGACATTAATCTGAAGCTTCATCACGTCGCCGCAGGCCGGGG
rJMFF012O22-          TCTTCCCACTCTCATCATCGACATTAATCTGAAGCTTCATCACGTCGCCGCAGGCCGGGG
                      ____________________________________________________________
consensus             TCTTCCCACTCTCATCATCGACCTTAATCTGAAGCTTCATCACGTCGCCGCAGGCCGGGG
 
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rJMFF025M05-          CGCCGACCAATCCGGTGCCGACGGTGGGGTCGTTCTTGTCGAAGGAGCCGACATTGCGGG
JMFF005B07+           CGCCGACCAACCCAGTACCGACGGTGGGGTCGTTCTTGTCAAAGGAGCCGACATTGCGGG
rJMFF005B07-          CGCCGACCAACCCAGTACCGACGGTGGGGTCGTTCTTGTCAAAGGAGCCGACATTGCGGG
JMFN015A16+           CGCCGACCAATCCGGTGCCGACGGTGGGGTCGTTCTTGTCGAAGGAGCCGACATTGCGGG
JMFN012J04+           CGCCGACCAATCCGGTGCCGACGGTGGGGTCGTTCTTGTCGAAGGAGCCGACATTGCGGG
JMFF012O22+           CGCCGACCAATCCGGTGCCGACGGTGGGGTCGTTCTTGTCGAAGGAGCCGACATTGCGGG
JMFF025M05+           NGCCGACCAATCCGGTGCCGACGGTGGGGTCGTTCTTGTCGAAGGAGCCGACATTGCGGG
rJMFF012O22-          CGCCGACCAATCCGGTGCCGACGGTGGGGTCGTTCTTGTCGAAGGAGCCGACATTGCGGG
                      ____________________________________________________________
consensus             CGCCGACCAATCCGGTGCCGACGGTGGGGTCGTTCTTGTCGAAGGAGCCGACATTGCGGG
 
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rJMFF025M05-          GGTT-GTTGTAGTGGTCCACCACCCTCTCGTGGTAGAGCCGCGGCAGCCCCGCCGTGGCC
JMFF005B07+           GGTT-GTTGTAGTGGTCCACCACCCTCTCGTGGTAGAGCCGCGGCA              
rJMFF005B07-          GGTTGGTTGTAGTGGTCCACCACCCTCTCGTGGTAGAGCCGCGGCAGCCCCGCCGTGGCC
JMFN015A16+           GGTT-GTTGTAGTGGTCCACCACCCTCTCGTGGTAGAGCCGCGGCAGCCCCGCCGTGGCC
JMFN012J04+           GGTT-GTTGTAGTGGTCCACCACCCTCTCGTGGTAGAGCCGCGGCAGCCCCGCCGTGGCC
JMFF012O22+           GGTT-GTTGTAGTGGTCCACCACCCTCTCGTGGTAGAGCCGCGGCAGCCCCGCCGTGGCC
JMFF025M05+           GGTT-GTTGTAGTGGTCCACCACCCTCTCGTGGTAGAGCCGCGGCAGCCCCGCCGTGGCC
rJMFF012O22-          GGTT-GTTGTAGTGGTCCACCACCCTCTCGTGGTAGAGCCGCGGCAGCCCCGCCGTGGCC
                      ____________________________________________________________
consensus             GGTT-GTTGTAGTGGTCCACCACCCTCTCGTGGTAGAGCCGCGGCAGCCCCGCCGTGGCC
 
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rJMFF025M05-          CTCTCC---GCCGCCGCAACTCGCGGCGCCAGCCCTAGAACTCTGTTGGCGGCAAGCTTC
rJMFF005B07-          CTCTCCGCCGCCGCCGCAACTCGCGGCGCCAGCCCTAGAACTCTGTTGCCCGCAAGCTTC
JMFN015A16+           CTCTCC---GCCGCCGCAACTCGCGGCGCCAGCCCTAGAACTCTGTTGGCGGCAAGCTTC
JMFN012J04+           CTCTCC---GCCGCCGCAACTCGCGGCGCCAGCCCTAGAACTCTGTTGGCGGCAAGCTTC
JMFF012O22+           CTCTCC---GCCGCCGCAACTCGCGGCGCCAGCCCTAGAACTCTGTTGGCGGCAAGCTTC
JMFF025M05+           CTCTCC---GCCGCCGCAACTCGCGGCGCCAGCCCTAGAACTCTGTTGGCGGCAAGCTTC
rJMFF012O22-          CTCTCC---GCCGCCGCAACTCGCGGCGCCAGCCCTAGAACTCTGTTGGCGGCAAGCTTC
                      ____________________________________________________________
consensus             CTCTCC---GCCGCCGCAACTCGCGGCGCCAGCCCTAGAACTCTGTTGGCGGCAAGCTTC
 
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rJMFF025M05-          AACATTCTTGCCGAATTAATCGTTGATAATTTCGGGAAATTCGCGTTAACGATTTCTTTG
rJMFF005B07-          AACATTCTTGCGGAATTGGTCGTTGATAATTT                            
JMFN015A16+           AACATTCTTGCCGAATTAATCGTTGATAATTTCGGGAAATTCGCGTTAACGATTTCTTTG
JMFN012J04+           AACATTCTTGCCGAATTAATCGTTGATAATTTCGGGAAATTCGCGTTAACGATTTCTTTG
JMFF012O22+           AACATTCTTGCCGAATTAATCGTTGATAATTTCGGGAAATTCGCGTTAACGATTTCTTTG
JMFF025M05+           AACATTCTTGCCGAATTAATCGTTGATAATTTCGGGAAATTCGCGTTAACGATTTCTTTG
rJMFF012O22-          AACATTCTTGCCGAATTAATCGTTGATAATTTCGGGAAATTCGCGTTAACGATTTCTTTG
                      ____________________________________________________________
consensus             AACATTCTTGCCGAATTAATCGTTGATAATTTCGGGAAATTCGCGTTAACGATTTCTTTG
 
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rJMFF025M05-          TAGGATTGAAATTGTTTGTTTGATTTCTGGGAGATA                        
JMFN015A16+           TAGGATTGAAATTGTTTGTTTGATTTCTGGGAGATAATTTTAG                 
JMFN012J04+           TAGGATTGAAATTGTTTGTTTGATTTCTGGGAGATAATTTTAGGTTAGTTGAA       
JMFF012O22+           TAGGATTGAAATTGTTTGTTTG                                      
JMFF025M05+           TAGGATTGAAATTGTTTGTTTG                                      
rJMFF012O22-          TAGGATTGAAATTGTTTGTTTGATTTCTGGGAGATAATTTTAGGNTAGTTGAAGTGCGTA
                      ____________________________________________________________
consensus             TAGGATTGAAATTGTTTGTTTGATTTCTGGGAGATAATTTTAGGTTAGTTGAAGTGCGTA