Contig 001060:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF011I09Sequence550011900 (5)ref|XP_010246834.1|2e-102PREDICTED: protein RRP45A-like isoform X2 [Nelumbo nucifera]715001060 (4)ref|XP_009610301.1|3e-08PREDICTED: protein RRP45A-like isoform X2 [Nicotiana tomentosiformis]
JMFF031O20Sequence560011900 (5)ref|XP_010246834.1|3e-104PREDICTED: protein RRP45A-like isoform X2 [Nelumbo nucifera]714001060 (4)ref|XP_009610302.1|4e-08PREDICTED: protein RRP45A-like isoform X3 [Nicotiana tomentosiformis]
JMFF034H19Sequence549011900 (5)ref|XP_010246834.1|2e-101PREDICTED: protein RRP45A-like isoform X2 [Nelumbo nucifera]691001060 (4)ref|XP_009610302.1|1e-07PREDICTED: protein RRP45A-like isoform X3 [Nicotiana tomentosiformis]
JMFF040I22Sequence552011900 (5)ref|XP_010246834.1|4e-102PREDICTED: protein RRP45A-like isoform X2 [Nelumbo nucifera]719001060 (4)ref|XP_009610302.1|2e-08PREDICTED: protein RRP45A-like isoform X3 [Nicotiana tomentosiformis]

Alignment

This contig is upended


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rJMFF040I22+                                                             TAAGCCAGA
                      ____________________________________________________________
consensus                                                                TAAGCCAGA
 
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rJMFF031O20+                      GGGGAGTTGGGAAATATCAGAAATTTTCAGGCAGACCATCAAGTTGGG
rJMFF040I22+          TGGAAATAACAGGGGGAGTTGGGAAATATCAGAAATTTTCAGGCAGACCATCAAGTTGGG
rJMFF034H19+                             TGGGAAATATCAGAAATTTTCAGGCAGACCATCAAGTTGGG
rJMFF011I09+                      GGGGAGTTGGGAAATATCAGAAATTTTCAGGCAGACCATCAAGTTGGG
                      ____________________________________________________________
consensus             TGGAAATAACAGGGGGAGTTGGGAAATATCAGAAATTTTCAGGCAGACCATCAAGTTGGG
 
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rJMFF031O20+          ATCCATATTCAACAGGTGTTAACATAGAAGAATTGAAATTTACTCTTACTTTACATGGCT
rJMFF040I22+          ATCCATATTCAACAGGTGTTAACATAGAAGAATTGAAATTTACTCTTACTTTACATGGCT
rJMFF034H19+          ATCCATATTCAACAGGTGTTAACATAGAAGAATNGAAATTTACTCTTACTTTACATGGCT
rJMFF011I09+          ATCCATATTCAACAGGTGTTAACATAGAAGAATTGAAATTTACTCTTACTTTACATGGCT
                      ____________________________________________________________
consensus             ATCCATATTCAACAGGTGTTAACATAGAAGAATTGAAATTTACTCTTACTTTACATGGCT
 
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rJMFF031O20+          CTTCAGCTCTCTGTGAGAAGCCATATGAAACTGAAACAGTGCATGAGAAGCCTTGTGATA
rJMFF040I22+          CTTCAGCTCTCTGTGAGAAGCCATATGAAACTGAAACAGTGCATGAGAAGCCTTGTGATA
rJMFF034H19+          CTTCAGCTCTCTGTGAGAAGCCATATGAAACTGAAACAGTGCATGAGAAGCCTTGTGATA
rJMFF011I09+          CTTCAGCTCTCTGTGAGAAGCCATATGAAACTGAAACAGTGCATGAGAAGCCTTGTGATA
                      ____________________________________________________________
consensus             CTTCAGCTCTCTGTGAGAAGCCATATGAAACTGAAACAGTGCATGAGAAGCCTTGTGATA
 
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rJMFF031O20+          CAGAATCTGGACAACGTTCTGCAGATGTTAATCCAGCACCTTTAATAGCTGTGACAACTG
rJMFF040I22+          CAGAATCTGGACAACGTTCTGCAGATGTTAATCCAGCACCTTTAATAGCTGTGACAACTG
rJMFF034H19+          CAGAATCTGGACAACGTTCTGCAGATGTTAATCCAGCACCTTTAATAGCTGTGACAACTG
rJMFF011I09+          CAGAATCTGGACAACGTTCTGCAGATGTTAATCCAGCACCTTTAATAGCTGTGACAACTG
                      ____________________________________________________________
consensus             CAGAATCTGGACAACGTTCTGCAGATGTTAATCCAGCACCTTTAATAGCTGTGACAACTG
 
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rJMFF031O20+          GAAATGAAATACCAACTAACAGAGTGAAAACTTTAAAGGATGCTATAAAGCCTAAGCACA
rJMFF040I22+          GAAATGAAATACCAACTAACAGAGTGAAAACTTTAAAGGATGCTATAAAGCCTAAGCACA
rJMFF034H19+          GAAATGAAATACCAACTAACAGAGTGAAAACTTTAAAGGATGCTATAAAGCCTAAGCACA
rJMFF011I09+          GAAATGAAATACCAACTAACAGAGTGAAAACTTTAAAGGATGCTATAAAGCCTAAGCACA
                      ____________________________________________________________
consensus             GAAATGAAATACCAACTAACAGAGTGAAAACTTTAAAGGATGCTATAAAGCCTAAGCACA
 
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rJMFF031O20+          AGCGAAAAAAGAAGCCAGCCACGAATGCTGATGCAAGCTAGAGGACATAAGCCAGTTTAT
rJMFF040I22+          AGCGAAAAAAGAAGCCAGCCACGAATGCTGATGCAAGCTAGAGGACATAAGCCAGTTTAT
rJMFF034H19+          AGCGAAAAAAGAAGCCAGCCACGAATGCTGATGTAAGCTAGAGGACATAAGCCAGTTTAT
rJMFF011I09+          AGCGAAAAAAGAAGCCAGCCACGAATGCTGATGTAAGCTAGAGGACATAAGCCAGTTTAT
                      ____________________________________________________________
consensus             AGCGAAAAAAGAAGCCAGCCACGAATGCTGATGTAAGCTAGAGGACATAAGCCAGTTTAT
 
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rJMFF031O20+          CTTTTCAAGGTTTAATTGTGTGCTTCTTGGCACACCCAAACCCCGTCACTTCAAATGGGA
rJMFF040I22+          CTTTTCAAGGTTTAATTGTGTGCTTCTTGGCACACCCAAACCCCGTCACTTCAAATGGGA
rJMFF034H19+          CTTTTCAAGGTTTAATTGTGTGCTTCTTGGCACACCCAAACCCCGTCACTTCAAATGGGA
rJMFF011I09+          CTTTTCAAGGTTTAATTGTGTGCTTCTTGGCACACCCAAACCCCGTCACTTCAAATGGGA
                      ____________________________________________________________
consensus             CTTTTCAAGGTTTAATTGTGTGCTTCTTGGCACACCCAAACCCCGTCACTTCAAATGGGA
 
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rJMFF031O20+          GTGGAAATGTCTCTGAGGAACGCAAAGCTCTTAACTGGTTTAAGATATCAACCAAAGCAG
rJMFF040I22+          GTGGAAATGTCTCTGAGGAACGCAAAGCTCTTAACTGGTTTAAGATATCAACCAAAGCAG
rJMFF034H19+          GTGGAAATGTCTCTGAGGAACGCAAAGCTCTTAACTGGTTTAAGATATCAACCAAAGCAG
rJMFF011I09+          GTGGAAATGTCTCTGAGGAACGCAAAGCTCTTAACTGGTTTAAGATATCAACCAAAGCAG
                      ____________________________________________________________
consensus             GTGGAAATGTCTCTGAGGAACGCAAAGCTCTTAACTGGTTTAAGATATCAACCAAAGCAG
 
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rJMFF031O20+          TAGAAGAATTCTGTGAATTAATATGCTCGGGATACAAGGAAGTTGCTCTGATTAAACTCT
rJMFF040I22+          TAGAAGAATTCTGTGAATTAATATGCTCGGGATACAAGGAAGTTGCTCTGATTAAACTCT
rJMFF034H19+          TAGAAGAATTCTGTGAATTAATATGCTCGGGATACAAGGAAGTTGCTCTGATTAAACTCT
rJMFF011I09+          TAGAAGAATTCTGTGAATTAATATGCTCGGGATACAAGGAAGTTGCTCTGATTAAACTCT
                      ____________________________________________________________
consensus             TAGAAGAATTCTGTGAATTAATATGCTCGGGATACAAGGAAGTTGCTCTGATTAAACTCT
 
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rJMFF031O20+          GTGAAAGTCCAAATAGAGGGCTGCAATCGTCTGCCTTGGTTGTGTTACCTTAGCATCTTG
rJMFF040I22+          GTGAAAGTCCAAATAGAGGGCTGCAATCGTCTGCCTTGGTTGTGTTACCTTAGCATCTTG
rJMFF034H19+          GTGAAAGTCCAAATAGAGGGCTGCAATCGTCTGCCTTGGTTGTGTTACCTTAGCATCTTG
rJMFF011I09+          GTGAAAGTCCAAATAGAGGGCTGCAATCGTCTGCCTTGGTTGTGTTACCTTAGCATCTTG
                      ____________________________________________________________
consensus             GTGAAAGTCCAAATAGAGGGCTGCAATCGTCTGCCTTGGTTGTGTTACCTTAGCATCTTG
 
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rJMFF031O20+          TTCCAGGCTTCTTTCAGATTGTATGGTTATTAACCACGTCGCTGAAACTCGGACAAATAT
rJMFF040I22+          TTCCAGGCTTCTTTCAGATTGTATGGTTATTAACCACGTCGCTGAAACTCGGACAAATAT
rJMFF034H19+          TTCCAGGCTTCTTTCAGATTGTATGGTTATTAACCACGTCGCTGAAACTCGGACAAATAT
rJMFF011I09+          TTCCAGGCTTCTTTCAGATTGTATGGTTATTAACCACGTCGCTGAAACTCGGACAAATAT
                      ____________________________________________________________
consensus             TTCCAGGCTTCTTTCAGATTGTATGGTTATTAACCACGTCGCTGAAACTCGGACAAATAT
 
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rJMFF031O20+          TGTGGTTTTGCCCATTTTCGTGTTGGCGAACAGACAGGTTCATAAAGCT           
rJMFF040I22+          TGTGGTTTTGCCCATTTTCGTGTTGGCGAACAGACAGGTTCATAAAGCT           
rJMFF034H19+          TGTGGTTTTGCCCATTTTCGTGTTGGCGAACAGACAGGTTCATAAAGCT           
rJMFF011I09+          TGTGGTTTTGCCCATTTTCGTGTTGGCGAACAGACAGGTTCATAAAGCTGTTGCAAGTAT
                      ____________________________________________________________
consensus             TGTGGTTTTGCCCATTTTCGTGTTGGCGAACAGACAGGTTCATAAAGCTGTTGCAAGTAT