Contig 001058:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF011E18Sequence452010793 (2)ref|XP_009609263.1|1e-05PREDICTED: probable protein phosphatase 2C 33, partial [Nicotiana tomentosiform692001058 (2)ref|XP_009783863.1|1e-08PREDICTED: probable protein phosphatase 2C 33 [Nicotiana sylvestris]
JMSF034F21Sequence593010793 (2)ref|XP_009766558.1|6e-15PREDICTED: probable protein phosphatase 2C 33 [Nicotiana sylvestris]630001058 (2)ref|XP_009783863.1|5e-09PREDICTED: probable protein phosphatase 2C 33 [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMSF034F21+                                                  CTCCAGGGCTGTTGCAACGG
                      ____________________________________________________________
consensus                                                     CTCCAGGGCTGTTGCAACGG
 
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rJMSF034F21+          AAAAGGAGGCTGACCGACATGAACAGGGGGAACTTTCGGACGAGAGTCGAGAGGAAGTGT
rJMFF011E18+                                      GGAACTTTCGGACGAGAGTCGAGAGGAAGTGT
                      ____________________________________________________________
consensus             AAAAGGAGGCTGACCGACATGAACAGGGGGAACTTTCGGACGAGAGTCGAGAGGAAGTGT
 
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rJMSF034F21+          TAGAGCAAGAGGACTTGAATGAGGAAGTCGGGAAAGAATGGTCTGCCCTTGAAGGGGTGT
rJMFF011E18+          TAGAGCAAGAGGACTTGAATGAGGAAGTCGGGAAAGAATGGTCTGCCCTTGAAGGGGTGT
                      ____________________________________________________________
consensus             TAGAGCAAGAGGACTTGAATGAGGAAGTCGGGAAAGAATGGTCTGCCCTTGAAGGGGTGT
 
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rJMSF034F21+          CTCGGGTGAACACCCTGGTGACGTTGCCAAGGTTTGTGCCGGAAAAGGAGGATAAGAAAG
rJMFF011E18+          CTCGGGTGAACACCCTGGTGACGTTGCCAAGGTTTGTGCCGGAAAAGGAGGATAAGAAAG
                      ____________________________________________________________
consensus             CTCGGGTGAACACCCTGGTGACGTTGCCAAGGTTTGTGCCGGAAAAGGAGGATAAGAAAG
 
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rJMSF034F21+          CTATTGGAGGGACAAAGATGAAGAAGCAATGAAAAAAAAAGACTCGCTCCCACCTTTGAG
rJMFF011E18+          CTATTGGAGGGACAAAGATGAAGAAGCAATGAAAAAAAAAGACTCGCTCCCACCTTTGAG
                      ____________________________________________________________
consensus             CTATTGGAGGGACAAAGATGAAGAAGCAATGAAAAAAAAAGACTCGCTCCCACCTTTGAG
 
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rJMSF034F21+          GTCTGATTATTCCTAAAACCCCAATTTCACTTTCCTTTATTTTTTCATCTTATCTCTACT
rJMFF011E18+          GTCTGATTATTCCTAAAACCCCAATTTCACTTTCCTTTATTTTTTCATCTTATCTCTACT
                      ____________________________________________________________
consensus             GTCTGATTATTCCTAAAACCCCAATTTCACTTTCCTTTATTTTTTCATCTTATCTCTACT
 
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rJMSF034F21+          CTACAATGGGGGAAATGATTTGTAAAACCATTGATGTTCATTCTGCACTTGAGGGGTGGA
rJMFF011E18+          CTACAATGGGGGAAATGATTTGTAAAACCATTGATGTTCATTCTGCACTGGAGGGGTGGA
                      ____________________________________________________________
consensus             CTACAATGGGGGAAATGATTTGTAAAACCATTGATGTTCATTCTGCACTTGAGGGGTGGA
 
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rJMSF034F21+          CCGGGCTATATTAGTGTGTCTGGGAATCATTGTTTTTCTCCCTCGAGCTAGTGTGGGTAG
rJMFF011E18+          CCGGGCTATATTAGTGTGTCTGGGAATCATTGTTTTTCTCCCTCGAGCTAGTGTGGGTAG
                      ____________________________________________________________
consensus             CCGGGCTATATTAGTGTGTCTGGGAATCATTGTTTTTCTCCCTCGAGCTAGTGTGGGTAG
 
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rJMSF034F21+          AATCCGAGTTTTGCCATATCCAACTGGCCATCATTATTAATGTCTCTAATTTTGCCCGTT
rJMFF011E18+          AATCCGAGTTTTGCCATATCCAACTGGCCATCATTATTAATGTCTCTAATTTTGCCCGTT
                      ____________________________________________________________
consensus             AATCCGAGTTTTGCCATATCCAACTGGCCATCATTATTAATGTCTCTAATTTTGCCCGTT
 
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rJMSF034F21+          GAAGTTGTGTTATACGGTCAACAATGTTGTTAGTGTTCCGGTAATATATTGTGGCTAGGC
rJMFF011E18+          GAAGTTGTGTTATACGGTCAACAATGTTGTTAGTGTTCCGGTAATATATTGTGGCTAGGC
                      ____________________________________________________________
consensus             GAAGTTGTGTTATACGGTCAACAATGTTGTTAGTGTTCCGGTAATATATTGTGGCTAGGC
 
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rJMSF034F21+          TAGGCTAGGCTAGGCTAGGCTACTTGTTTCCAAGTGATTTCGTGTTCTTCCTCC      
rJMFF011E18+          TAGGCTAGGCTAGGCTAGGCTACTTGTTTCCAAGTGATTTCGTGTTCCTCCTCCCCTCCC
                      ____________________________________________________________
consensus             TAGGCTAGGCTAGGCTAGGCTACTTGTTTCCAAGTGATTTCGTGTTCTTCCTCCCCTCCC
 
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rJMFF011E18+          CATTCCCCATCCCTCAAGAACTTCACAATATATTCATTTCATTTGTGGTTATGGAGTTAT
                      ____________________________________________________________
consensus             CATTCCCCATCCCTCAAGAACTTCACAATATATTCATTTCATTTGTGGTTATGGAGTTAT
 
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rJMFF011E18+          CTTGCTTTCATTTCTAAGAGCAGGCTTCTAAAGATATTATGTGAAACTGAAACCAAATGG
                      ____________________________________________________________
consensus             CTTGCTTTCATTTCTAAGAGCAGGCTTCTAAAGATATTATGTGAAACTGAAACCAAATGG