Contig 001056:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF011B22Sequence574001056 (10)ref|XP_009589988.1|3e-48PREDICTED: double-stranded RNA-binding protein 1-like isoform X1 [Nicotiana tom757001056 (10)ref|XP_010319634.1|1e-04PREDICTED: double-stranded RNA-binding protein 1 isoform X2 [Solanum lycopersic
JMFN013J15Sequence510001056 (10)ref|XP_009589989.1|4e-05PREDICTED: double-stranded RNA-binding protein 4-like isoform X2 [Nicotiana tom
JMFN040G14Sequence604001056 (10)
JMSF009B05Sequence275000483 (7)ref|XP_009768744.1|2e-25PREDICTED: double-stranded RNA-binding protein 3-like [Nicotiana sylvestris]783001056 (10)ref|XP_009589989.1|6e-13PREDICTED: double-stranded RNA-binding protein 4-like isoform X2 [Nicotiana tom
JMSF009B06Sequence231002188 (3)ref|XP_009610808.1|2e-14PREDICTED: autophagy-related protein 13 [Nicotiana tomentosiformis] ref|XP_00961101001056 (10)
JMSF016N16Sequence541000483 (7)ref|XP_009768744.1|3e-24PREDICTED: double-stranded RNA-binding protein 3-like [Nicotiana sylvestris]761001056 (10)ref|XP_009589989.1|5e-10PREDICTED: double-stranded RNA-binding protein 4-like isoform X2 [Nicotiana tom
JMSF027I12Sequence650000483 (7)ref|XP_009768744.1|3e-24PREDICTED: double-stranded RNA-binding protein 3-like [Nicotiana sylvestris]780001056 (10)ref|XP_009589989.1|3e-12PREDICTED: double-stranded RNA-binding protein 4-like isoform X2 [Nicotiana tom
JMSF050D13Sequence660000483 (7)ref|XP_009768744.1|4e-24PREDICTED: double-stranded RNA-binding protein 3-like [Nicotiana sylvestris]759001056 (10)ref|XP_010319634.1|6e-10PREDICTED: double-stranded RNA-binding protein 1 isoform X2 [Solanum lycopersic
JMSF051D13Sequence656000483 (7)ref|XP_009768744.1|3e-24PREDICTED: double-stranded RNA-binding protein 3-like [Nicotiana sylvestris]760001056 (10)ref|XP_010319634.1|5e-09PREDICTED: double-stranded RNA-binding protein 1 isoform X2 [Solanum lycopersic

Alignment

This contig is upended


. : . : . : . : . : . :
JMFF011B22- CCATACTAAAAATGAAATTGCAGGTCGAAACAATGAACCGAATTCACAAACATCTG
                      ____________________________________________________________
consensus CCATACTAAAAATGAAATTGCAGGTCGAAACAATGAACCGAATTCACAAACATCTG
 
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JMFF011B22- GGTTTGGTTCAACACCATTGGTTCCTAAAGAGGTTTACAAATCTTCAGACATACGGTATA
                      ____________________________________________________________
consensus GGTTTGGTTCAACACCATTGGTTCCTAAAGAGGTTTACAAATCTTCAGACATACGGTATA
 
. : . : . : . : . : . :
JMFF011B22- TGTACAAGAACCAGTTGCAGCAATATGCTCAGAAGCAGAATATTACTTTACCTGAATATT
                      ____________________________________________________________
consensus TGTACAAGAACCAGTTGCAGCAATATGCTCAGAAGCAGAATATTACTTTACCTGAATATT
 
. : . : . : . : . : . :
JMFF011B22- CTTGTGAAATTGAAGGGCCACCACATGCTTGTCGCTTTAGATCAAAAGTGGTTTTTGGTG
                      ____________________________________________________________
consensus CTTGTGAAATTGAAGGGCCACCACATGCTTGTCGCTTTAGATCAAAAGTGGTTTTTGGTG
 
. : . : . : . : . : . :
JMFF011B22- GAAAAATCTTTGAAACCCAAGAATTTTTCTCTACATTGAAGGAAGCTGAACAAGCAGCTG
                      ____________________________________________________________
consensus GAAAAATCTTTGAAACCCAAGAATTTTTCTCTACATTGAAGGAAGCTGAACAAGCAGCTG
 
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JMFF011B22- CAAAAATTGCTCTTGAGGCATTATCACCCCAAGAAATTCAAAAGGGTGTAGGTTTATACA
                      ____________________________________________________________
consensus CAAAAATTGCTCTTGAGGCATTATCACCCCAAGAAATTCAAAAGGGTGTAGGTTTATACA
 
. : . : . : . : . : . :
JMFF011B22- AGGCCCTTCTACAACAACTGGAACAAAAACAGGGTGGCCTGTTTCCAGTATACAAGACAA
                      ____________________________________________________________
consensus AGGCCCTTCTACAACAACTGGAACAAAAACAGGGTGGCCTGTTTCCAGTATACAAGACAA
 
. : . : . : . : . : . :
JMFF011B22- TCCAGTCTGGTCCACCTCATGATCCAACTTTTGTGGCCACTGTGGTAGTTGGTGGTGAGA
rJMSF027I12+ ATGATCCAACTTTTGTGGCCACTGTGGTAGTTGGTGGTGAGA
rJMSF009B05+ ATGATCCAACTTTTGTGGCCACTGTGGTAGTTGGTGGTGAGA
rJMSF050D13+ TGTGGTAGTTGGTGGTGAGA
rJMSF016N16+ ACTGTGGTAGTTGGTGGTGAGA
rJMSF051D13+ TGTGGTAGTTGGTGGTGAGA
                      ____________________________________________________________
consensus TCCAGTCTGGTCCACCTCATGATCCAACTTTTGTGGCCACTGTGGTAGTTGGTGGTGAGA
 
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JMFF011B22- CATACCAAGGACTANAAGCTAAAAGCAAGAAGCAGGCTGAGATGAGTGCTGCAGAAGTTG
rJMSF027I12+ CATACCAAGGACTAGAAGCTAAAAGCAAGAAGCAGGCTGAGATGAGTGCTGCAGAAGTTG
rJMSF009B05+ CATACCAAGGACTAGAAGCTAAAAGCAAGAAGCAGGCTGAGATGAGTGCTGCAGAAGTTG
rJMSF050D13+ CATACCAAGGACTAGAAGCTAAAAGCAAGAAGCAGGCTGAGATGAGTGCTGCAGAAGTTG
rJMSF016N16+ CATACCAAGGACTAGAAGCTAAAAGCAAGAAGCAGGCTGAGATGAGTGCTGCAGAAGTTG
rJMSF051D13+ CATACCCAGGACTAGAAGCTAAAAGCAAGAAGCAGGCTGAGATGAGTGCTGCAGAAGTTG
rJMFF011B22+ CTAAAAGCAAGAAGCAGGCTGAGATGAGTGCTGCAGAAGTTG
                      ____________________________________________________________
consensus CATACCAAGGACTAGAAGCTAAAAGCAAGAAGCAGGCTGAGATGAGTGCTGCAGAAGTTG
 
. : . : . : . : . : . :
JMFF011B22- CGTATAATTCTTGTATGAAGGGTACAGAAAATGCTTCA
rJMSF027I12+ CGTATAATTCTTGTATGAAGGGTACAGAAAATGCTTCAAAGAGGCAGAAAACATCAGCTG
rJMSF009B05+ CGTATAATTCTTGTATGAAGGGTACAGAAAATGCTTCAAAGAGGCAGAAAACATCAGCTG
rJMSF050D13+ CGTATAATTCTTGTATGAAGGGTACAGAAAATGCTTCAAAGAGGCAGAAAACATCAGCTG
rJMSF016N16+ CGTATAATTCTTGTATGAAGGGTACAGAAAATGCTTCAAAGAGGCAGAAAACATCAGCTG
rJMSF051D13+ CGTATAATTCTTGTATGAAGGGTACAGAAAATGCTTCAAAGAGGCAGAAAACATCAGCTG
rJMFF011B22+ CGTATAATTCTTGTATGAAGGGTACAGAAAATGCTTCAAAGAGGCAGAAAACATCAGCTG
                      ____________________________________________________________
consensus CGTATAATTCTTGTATGAAGGGTACAGAAAATGCTTCAAAGAGGCAGAAAACATCAGCTG
 
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rJMSF027I12+ CACCTGGCACGCATGTACATGCCCAGTCCTCAGCCTCACCACTACCACTCCAGCATACAA
rJMSF009B05+ CACCTGGCACGCATGTACATGCCCAGTCCTCAGCCTCACCACTACCACTCCAGCATACAA
rJMSF050D13+ CACCTGGCACGCATGTACATGCCCAGTCCTCAGCCTCACCACTACCACTCCAGCATACAA
rJMSF016N16+ CACCTGGCACGCATGTACATGCCCAGTCCTCAGCCTCACCACTACCACTCCAGCATACAA
rJMSF051D13+ CACCTGGCACGCATGTACATGCCCAGTCCTCAGCCTCACCACTACCACTCCAGCATACAA
JMFN040G14- CCTCACCACTACCACTCCAGCATACAA
JMFN013J15+ ACCACTCCAGCATACAA
rJMFF011B22+ CACCTGGCACGCATGTACATGCCCAGTCCTCAGCCTCACCACTACCACTCCAGCATACAA
                      ____________________________________________________________
consensus CACCTGGCACGCATGTACATGCCCAGTCCTCAGCCTCACCACTACCACTCCAGCATACAA
 
. : . : . : . : . : . :
rJMSF027I12+ CTCATCCTGCTGTGGAGTCTGTTATTCAGAGTT-CATCTGAATTCTATGCCAAGGAAATG
rJMSF009B05+ CTCATCCTGCTGTGGAGTCTGTTATTCAGAGTT-CATCTGAATTCTATGCCAAGGAAATG
rJMSF050D13+ CTCATCCTGCTGTGGAGTCTGTTATTCAGAGTT-CATCTGAATTCTATGCCAAGGAAATG
rJMSF016N16+ CTCATCCTGCTGTGGAGTCTGTTATTCAGAGTT-CATCTGAATTCTATGCCAAGGAAATG
rJMSF051D13+ CTCATCCTGCTGTGGAGTCTGTTATTCAGAGTT-CATCTGAATTCTATGCCAAGGAAATG
JMFN040G14- CTCATCCTGCTGTGGAGTCTGTTATTCAGAGTT-CATCTGAATTCTATGCCAAGGAAATG
JMFN013J15+ CTGATCCTGCTGTGGAGTCTGTTATTCAGAGTTCCATCTGAATTCTATGCCAAGGAAATA
rJMFF011B22+ CTCATCCTGCTGTGGAGTCTGTTATTCAGAGTT-CATCTGAATTCTATGCCAAGGAAATG
                      ____________________________________________________________
consensus CTCATCCTGCTGTGGAGTCTGTTATTCAGAGTT-CATCTGAATTCTATGCCAAGGAAATG
 
. : . : . : . : . : . :
rJMSF027I12+ GATATGATTGAGGTTTCACAACCCAATTCAAATGAGGCAGTTTCTGGTCATGCTTCCACC
rJMSF009B05+ GATATGATTGAGGTTTCACAACCCAATTCAAATGAGGCAGTTTCTGGTCATGCTTCCACC
rJMSF050D13+ GATATGATTGAGGTTTCACAACCCAATTCAAATGAGGCAGTTTCTGGTCATGCTTCCACC
rJMSF016N16+ GATATGATTGAGGTTTCACAACCCAATTCAAATGAGGCAGTTTCTGGTCATGCTTCCACC
rJMSF051D13+ GATATGATTGAGGTTTCACAACCCAATTCAAATGAGGCAGTTTCTGGTCATGCTTCCACC
JMFN040G14- GATATGATTGAGGTTTCACAACCCAATTCAAATGAGGCAGTTTCTGGTCATGCTTCCACC
JMFN013J15+ GATAAGATTGAGGTTTCACAACCCAATCCAAATGAGGCAGTTTCTGGTCATGCTTCCACC
rJMFF011B22+ GATATGATTGAGGTTTCACAACCCAATTCAAATGAGGCAGTTTCTGGTCATGCTTCCACC
                      ____________________________________________________________
consensus GATATGATTGAGGTTTCACAACCCAATTCAAATGAGGCAGTTTCTGGTCATGCTTCCACC
 
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rJMSF027I12+ TTGC----CCTCTATCCAGGCTTTGCCTGACAACCAATCCTCCACTCCACTGAAGCAAGA
rJMSF009B05+ TTGC----CCTCTATCCAGGCTTTGCCTGACAACCAATCCTCCACTCCACTGAAGCAAGA
rJMSF050D13+ TTGC----CCTCTATCCAGGCTTTGCCTGACAACCAATCCTCCACTCCACTGAAGCAAGA
rJMSF016N16+ TTGC----CCTCTATCCAGGCTTTGCCTGACAACCAATCCTCCACTCCACTGAAGCAAGA
rJMSF051D13+ TTGC----CCTCTATCCAGGCTTTGCCTGACAACCAATCCTCCACTCCACTGAAGCAAGA
JMFN040G14- TTGC----CCTCTATCCAGGCTTTGCCTGACAACCAATCCTCCACTCCACTGAAGCAAGA
JMFN013J15+ TTGCCCGGCCTCTATCCAGGCTTTGCCTGACAACCAATCCTCCACTCCACTGACGCTAGA
rJMSF009B06+ TGAAGCAAGA
rJMFF011B22+ TTGC----CCTCTATCCAGGCTTTGCCTGACAACCAATCCTCCACTCCACTGAAGCAAGA
                      ____________________________________________________________
consensus TTGC----CCTCTATCCAGGCTTTGCCTGACAACCAATCCTCCACTCCACTGAAGCAAGA
 
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rJMSF027I12+ GCATTTAACTTGTTCTATTCAAGAGTTTGATCAGAAGAGACCAGCTGTGAGGGACATGAT
rJMSF009B05+ GCATTTAACTTGTTCTATTCAAGAGTTTGATCAGAAGAGACCAGCTGTGAGGGACATGAT
rJMSF050D13+ GCATTTAACTTGTTCTATTCAAGAGTTTGATCAGAAGAGACCAGCTGTGAGGGACATGAT
rJMSF016N16+ GCATTTAACTTGTTCTATTCAAGAGTTTGATCAGAAGAGACCAGCTGTGAGGGACATGAT
rJMSF051D13+ GCATTTAACTTGTTCTATTCAAGAGTTTGATCAGAAGAGACCAGCTGTGAGGGACATGAT
JMFN040G14- GCATTTAACTTGTTCTATTCAAGAGTTTGATCAGAAGAGACCAGCTGTGAGGGACATGAT
JMFN013J15+ GCATTTAACTTGTTCTATTCAGGAGTTTGATCAGAAGAGACCAGCTGTGAGGGACATGAT
rJMSF009B06+ GCATTTAACTTGTTCTATTCAAGAGTTTGATCAGAAGAGNCCAGCTGTGAGGGACANGAT
rJMFF011B22+ GCATTTAACTTGTTCTATTCAAGAGTTTGATCAGAAGAGACCAGCTGTGAGGGACATGAT
                      ____________________________________________________________
consensus GCATTTAACTTGTTCTATTCAAGAGTTTGATCAGAAGAGACCAGCTGTGAGGGACATGAT
 
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rJMSF027I12+ TTTGGTTTACCCAAATGCTTCAAATCAGATACTTCCTGTCCCTGAGAATGCTTCCATCTT
rJMSF009B05+ TTTGGTTTACCCAAATGCTTCAAATCAGATACTTCCTGTCCCTGAGAATGCTTCCATCTT
rJMSF050D13+ TTTGGTTTACCCAAATGCTTCAAATCAGATACTTCCTGTCCCTGAGAATGCTTCCATCTT
rJMSF016N16+ TTTGGTTTACCCAAATGCTTCAAATCAGATACTTCCTGTCCCTGAGAATGCTTCCATCTT
rJMSF051D13+ TTTGGTTTACCCAAATGCTTCAAATCAGATACTTCCTGTCCCTGAGAATGCTTCCATCTT
JMFN040G14- TTTGGTTTACCCAAATGCTTCAAATCAGATACTTCCTGTCCCTGAGAATGCTTCCATCTT
JMFN013J15+ TTTGGTTTATCCAAATGCTTCAAGTCAGGTACTTCCTGTCCCTGAGATTGCTTCCATCTT
rJMSF009B06+ TTTGGTTTACCCAAATGCTTCAAATCAGATA
rJMFF011B22+ TTTGGTTTACCCAAATGCTTCAAATCAGATACTTCCTGTCCCTGAGAATGCTTCCATCTT
                      ____________________________________________________________
consensus TTTGGTTTACCCAAATGCTTCAAATCAGATACTTCCTGTCCCTGAGAATGCTTCCATCTT
 
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rJMSF027I12+ GGCCTGCAGCAACAACAAATGGACGGCTGTTCAAGTAGAGCTGAATCAGAATGAAGGGCA
rJMSF009B05+ GGCCTGCAGCAACAACAAATGGACGGCTGTTCAAGTAGAGCTGAATCAGAATGAAGGGCA
rJMSF050D13+ GGCCTGCAGCAACAACAAATGGACGGCTGTTCAAGTAGAGCTGAATCAGAATGAAGGGCA
rJMSF016N16+ GGCCTGCAGCAACAACAAATGGACGGCTGTTCAAGTAGAGCTGAATCAGAATGAAGGGCA
rJMSF051D13+ GGCCTGCAGCAACAACAAATGGACGGCTGTTCAAGTAGAGCTGAATCAGAATGAAGGGCA
JMFN040G14- GGCCTGCAGCAACAACAAATGGACGGCTGTTCAAGTAGAGCTGAATCAGAATGAAGGGCA
JMFN013J15+ GCCCTGCAGCAACAACAAATGGACGGCTGTTGGAGTAGAGCT
rJMFF011B22+ GGCCTGCAGCAACAACAAATGGACGGCTGTTCAAGTAGAGCTGAATCAGAATGAAGGGCA
                      ____________________________________________________________
consensus GGCCTGCAGCAACAACAAATGGACGGCTGTTCAAGTAGAGCTGAATCAGAATGAAGGGCA
 
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rJMSF027I12+ GAACTATTGTCCATCCACATCCTGTGTGTAATCTTGCATTCATTTTGTATGTTGTCAGGG
rJMSF009B05+ GAACTATTGTCCATCCACATCCTGTGTGTAATCTTGCATTCATTTTGTATGTTGTCAGGG
rJMSF050D13+ GAACTATTGTCCATCCACATCCTGTGTGTAATCTTGCATTCATTTTGTATGTTGTCAGGG
rJMSF016N16+ GAACTATTGTCCATCCACATCCTGTGTGTAATCTTGCATTCATTTTGTATGTTGTCAGGG
rJMSF051D13+ GAACTATTGTCCATCCACATCCTGTGTGTAATCTTGCATTCATTTTGTATGTTGTCAGGG
JMFN040G14- GAACTATTGTCCATCCACATCCTGTGTGTAATCTTGCATTCATTTTGTATGTTGTCAGGG
rJMFF011B22+ GAACTATTGTCCATCCACATCCTGTGTGTAATCTTGCATTCATTTTGTATGTTGTCAGGG
                      ____________________________________________________________
consensus GAACTATTGTCCATCCACATCCTGTGTGTAATCTTGCATTCATTTTGTATGTTGTCAGGG
 
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rJMSF027I12+ AATTTGTTACTGCCTTGGTTGGGGTTGGCAGTTCGTAGTTGTTGGAGTTTGTTTCGCATT
rJMSF009B05+ AATTTGTTACTGCCTTGGTTGGGGTTGGCAGTTCGTAGTTGTTGGAGTTTGTTTCGCATT
rJMSF050D13+ AATTTGTTACTGCCTTGGTTGGGGTTGGCAGTTCGTAGTTGTTGGAGTTTGTTTCGCATT
rJMSF016N16+ AATTTGTTACTGCCTTGGTTGGGGTTGGCAGTTCGTAGTTGTTGGAGTTTGTTTCGCATT
rJMSF051D13+ AATTTGTTACTGCCTTGGTTGGGGTTGGCAGTTCGTAGTTGTTGGAGTTTGTTTCGCATT
JMFN040G14- AATTTGTTACTGCCTTGGTTGGGGTTGGCAGTTCGTAGTTGTTGGAGTTTGTTTCGCATT
rJMFF011B22+ AATTTGTTACTGCCTTGGTTGGGGTTGGCAGTTCGTAGTTGTTGGAGTTTGTTTCGCATT
                      ____________________________________________________________
consensus AATTTGTTACTGCCTTGGTTGGGGTTGGCAGTTCGTAGTTGTTGGAGTTTGTTTCGCATT
 
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rJMSF027I12+ CTTACTCTCTTTTGCTGGGAAAGTTGGAACTTTGGCCTTATTTGACAATCAGCAATTAGC
rJMSF009B05+ CTTACTCTCTTTTGCTGGGAAAGTTGGAACTTTGGCCTTATTTGACAATCAGCAATTAGC
rJMSF050D13+ CTTACTCTCTTTTGCTGGGAAAGTTGGAACTTTGGCCTTATTTGACAATCAGCAATTAGC
rJMSF016N16+ CTTACTCTCTTTTGCTGGGAAAGTTGGAACTTTGGCCTTATTTGACAATCAGCAATTAGC
rJMSF051D13+ CTTACTCTCTTTTGCTGGGAAAGTTGGAACTTTGGCCTTATTTGACAATCAGCAATTAGC
JMFN040G14- CTTACTCTCTTTTGCTGGGAAAGTTGGAACTTTGGCCTTATTTGACAATCAGCAATTAGC
rJMFF011B22+ CTTACTCTCTTTTGCTGGGAAAGTTGGAACTTTGGCCTTATTTGACAATCAGCAATTAGC
                      ____________________________________________________________
consensus CTTACTCTCTTTTGCTGGGAAAGTTGGAACTTTGGCCTTATTTGACAATCAGCAATTAGC
 
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rJMSF027I12+ AAATAGGGAATTGTATAAGTAGG
rJMSF009B05+ AAATAGGGAATTGTATAAGTAGGT
rJMSF050D13+ AAATAGGGAATTGTATAAGTAGGT
rJMSF016N16+ AAATAGGGAATTGTATAAGTAGGT
rJMSF051D13+ AAATAGGGAATTGTATAAGTAGGT
JMFN040G14- AAATAGGGAATTGTATAAGTAGGTGTGACAGAGGATTGTATC
rJMFF011B22+ AAATAGGGAATTGTATAAGTAGGTGTGACAGAGGATTGTATCCAGTGATTANAAAAAAAG
                      ____________________________________________________________
consensus AAATAGGGAATTGTATAAGTAGGTGTGACAGAGGATTGTATCCAGTGATTANAAAAAAAG