Contig 001055:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF010P01Sequence591004557 (6)ref|XP_006363008.1|2e-48PREDICTED: endoplasmin homolog [Solanum tuberosum]674001055 (5)ref|XP_009798975.1|5e-58PREDICTED: heat shock protein 83 [Nicotiana sylvestris]
JMFF012H16Sequence592004557 (6)ref|XP_006363008.1|1e-47PREDICTED: endoplasmin homolog [Solanum tuberosum]791001055 (5)ref|XP_009798975.1|6e-83PREDICTED: heat shock protein 83 [Nicotiana sylvestris]
JMFF016I08Sequence594004557 (6)ref|XP_006363008.1|2e-48PREDICTED: endoplasmin homolog [Solanum tuberosum]676001055 (5)ref|XP_009798975.1|1e-58PREDICTED: heat shock protein 83 [Nicotiana sylvestris]
JMFF024K13Sequence474004557 (6)ref|XP_006363008.1|2e-09PREDICTED: endoplasmin homolog [Solanum tuberosum]607001055 (5)ref|XP_009605137.1|3e-35PREDICTED: heat shock protein 83 [Nicotiana tomentosiformis]
JMSF028E02Sequence666004557 (6)ref|XP_006363008.1|3e-56PREDICTED: endoplasmin homolog [Solanum tuberosum]735001055 (5)ref|XP_009798975.1|2e-80PREDICTED: heat shock protein 83 [Nicotiana sylvestris]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF012H16+ CAGGAGAAGGGA
                      ____________________________________________________________
consensus CAGGAGAAGGGA
 
. : . : . : . : . : . :
rJMSF028E02+ AATTTGGTCCAGCTTGTGATTGGATTAAGAAACGTTTAGGTGATAAAGT
rJMFF012H16+ GATGAACCAAGAATTTGGTCCAGCTTGTGATTGGATTAAGAAACGTTTAGGTGATAAAGT
                      ____________________________________________________________
consensus GATGAACCAAGAATTTGGTCCAGCTTGTGATTGGATTAAGAAACGTTTAGGTGATAAAGT
 
. : . : . : . : . : . :
rJMSF028E02+ TGCCAGTGTACAAATCTCAAATCGTCTAAGCTCGTCTCCTTGTGTTCTAGTAACTGGAAA
rJMFF016I08+ TCTAGTAACTGGAAA
rJMFF012H16+ TGCCAGTGTACAAATCTCAAATCGTCTAAGCTCGTCTCCTTGTGTTCTAGTAACTGGAAA
rJMFF010P01+ TCTAGTAACTGGAAA
                      ____________________________________________________________
consensus TGCCAGTGTACAAATCTCAAATCGTCTAAGCTCGTCTCCTTGTGTTCTAGTAACTGGAAA
 
. : . : . : . : . : . :
rJMSF028E02+ GTTTGGTTGGTCTGCCAACATGGAAAGGCTGATGAAGGCCCAAAGTGTTGGTGATAACTC
rJMFF016I08+ GTTTGGTTGGTCTGCCAACATGGAAAGGCTGATGAAGGCCCAAAGTGTTGGTGATAACTC
rJMFF012H16+ GTTTGGTTGGTCTGCCAACATGGAAAGGCTGATGAAGGCCCAAAGTGTTGGTGATAACTC
rJMFF024K13+ GGAAAGGCTGATGAAGGCCCAAAGTGTTGGTGATAACTC
rJMFF010P01+ GTTTGGTTGGTCTGCCAACATGGAAAGGCTGATGAAGGCCCAAAGTGTTGGTGATAACTC
                      ____________________________________________________________
consensus GTTTGGTTGGTCTGCCAACATGGAAAGGCTGATGAAGGCCCAAAGTGTTGGTGATAACTC
 
. : . : . : . : . : . :
rJMSF028E02+ CAGCTTGGCATTTATGAAAAGCAGAAGAGTCTT-TGAGATAAATCCTAACCACCCAATCA
rJMFF016I08+ CAGCTTGGCATTTATGAAAAGCAGAAGAGTCTT-TGAGATAAATCCTAACCACCCAATCA
rJMFF012H16+ CAGCTTGGCATTTATGAAAAGCAGAAGAGTCTT-TGAGATAAATCCTAACCACCCAATCA
rJMFF024K13+ CAGCTTGGCATTTATGAAAAGCAGAAGAGTNTTNTGAGATAAATCCTANCCACCCAATCA
rJMFF010P01+ CAGCTTGGCATTTATGAAAAGCAGAAGAGTCTT-TGAGATAAATCCTAACCACCCAATCA
                      ____________________________________________________________
consensus CAGCTTGGCATTTATGAAAAGCAGAAGAGTCTT-TGAGATAAATCCTAACCACCCAATCA
 
. : . : . : . : . : . :
rJMSF028E02+ TCAGAACTTTGAATGAAGCATCCAAGAATAGTCCAGATGATGAAGAAGCCCTGAGAGCAA
rJMFF016I08+ TCAGAACTTTGAATGAAGCATCCAAGAATAGTCCAGATGATGAAGAAGCCCTGAGAGCAA
rJMFF012H16+ TCAGAACTTTGAATGAAGCATCCAAGAATAGTCCAGATGATGAAGAAGCCCTGAGAGCAA
rJMFF024K13+ TCAGAACTTTGAATGAAGCATCCAAGAATAGTCCAGATGATGAAGAAGCCCTGAGAGCAA
rJMFF010P01+ TCAGAACTTTGAATGAAGCATCCAAGAATAGTCCAGATGATGAAGAAGCCCTGAGAGCAA
                      ____________________________________________________________
consensus TCAGAACTTTGAATGAAGCATCCAAGAATAGTCCAGATGATGAAGAAGCCCTGAGAGCAA
 
. : . : . : . : . : . :
rJMSF028E02+ TTGATCTTTTGTATGACGCAGCTTTGGTCTCTAGTGGTTTCACTCCCGATAATCCCGCTG
rJMFF016I08+ TTGATCTTTTGTATGACGCAGCTTTGGTCTCTAGTGGTTTCACTCCCGATAATCCCGCTG
rJMFF012H16+ TTGATCTTTTGTATGACGCAGCTTTGGTCTCTAGTGGTTTCACTCCCGATAATCCCGCTG
rJMFF024K13+ TTGATCTTTTGTATGACGCAGCTTTGGTCTCTAGTGGTTTCACTCCCGATAATCCCGCTG
rJMFF010P01+ TTGATCTTTTGTATGACGCAGCTTTGGTCTCTAGTGGTTTCACTCCCGATAATCCCGCTG
                      ____________________________________________________________
consensus TTGATCTTTTGTATGACGCAGCTTTGGTCTCTAGTGGTTTCACTCCCGATAATCCCGCTG
 
. : . : . : . : . : . :
rJMSF028E02+ AGCTTGGAGGTAAGATCTATGGCATGATGAACATGGCTCTATCAGGCAAATGGGGAGCTT
rJMFF016I08+ AGCTTGGAGGTAAGATCTATGGCATGATGAACATGGCTCTATCAGGCAAATGGGGAGCTT
rJMFF012H16+ AGCTTGGAGGTAAGATCTATGGCATGATGAACATGGCTCTATCAGGCAAATGGGGAGCTT
rJMFF024K13+ AGCTTGGAGGTAAGATCTATGGCATGATGAACATGGCTCTATCAGGCAAATGGGGAGCTT
rJMFF010P01+ AGCTTGGAGGTAAGATCTATGGCATGATGAACATGGCTCTATCAGGCAAATGGGGAGCTT
                      ____________________________________________________________
consensus AGCTTGGAGGTAAGATCTATGGCATGATGAACATGGCTCTATCAGGCAAATGGGGAGCTT
 
. : . : . : . : . : . :
rJMSF028E02+ CAGATGGGTTTCAGCAATATGCGAACCCCCAAACACAGATACCCGAAACAGTTGAGGCTG
rJMFF016I08+ CAGATGGGTTTCAGCAATATGCGAACCCCCAAACACAGATACCCGAAACAGTTGAGGCTG
rJMFF012H16+ CAGATGGGTTTCAGCAATATGCGAACCCCCAAACACAGATACCCGAAACAGTTGAGGCTG
rJMFF024K13+ CAGATGGGTTTCAGCAATATGCGAACCCCCAAACACAGATACCCGAAACAGTTGAGGCTG
rJMFF010P01+ CAGATGGGTTTCAGCAATATGCGAACCCCCAAACACAGATACCCGAAACAGTTGAGGCTG
                      ____________________________________________________________
consensus CAGATGGGTTTCAGCAATATGCGAACCCCCAAACACAGATACCCGAAACAGTTGAGGCTG
 
. : . : . : . : . : . :
rJMSF028E02+ AGGTGGTGGAGCCTGCCCAAGTCAGTGGCCAAAAGTAAACTAAGTATATGACGACCTAGT
rJMFF016I08+ AGGTGGTGGAGCCTGCCCAAGTCAGTGGCCAAAAGTAAACTAAGTATATGACGACCTAGT
rJMFF012H16+ AGGTGGTGGAGCCTGCCCAAGTCAGTGGCCAAAAGTAAACTAAGTATATGACGACCTAGT
rJMFF024K13+ AGGTGGTGGAGCCTGCCCAAGTCAGTGGCCAAAAGTAAACTAAGTATATGACGACCTAGT
rJMFF010P01+ AGGTGGTGGAGCCTGCCCAAGTCAGTGGCCAAAAGTAAACTAAGTATATGACGACCTAGT
                      ____________________________________________________________
consensus AGGTGGTGGAGCCTGCCCAAGTCAGTGGCCAAAAGTAAACTAAGTATATGACGACCTAGT
 
. : . : . : . : . : . :
rJMSF028E02+ TGAAGTTTAGCAGTTGGTGGATTTGAACTTTGAAGCTCTATCCTATCCCAAGCCTCCCTC
rJMFF016I08+ TGAAGTTTAGCAGTTGGTGGATTTGAACTTTGAAGCTCTATCCTATCCCAAGCCTCCCTC
rJMFF012H16+ TGAAGTTTAGCAGTTGGTGGATTTGAACTTTGAAGCTCTATCCTATCCCAAGCCTCCCTC
rJMFF024K13+ TGAAGTTTAGCAGTTGGTGGATTTGAACTTTGAAGCTCTATCCTATCCCAAGCCTCCCTC
rJMFF010P01+ TGAAGTTTAGCAGTTGGTGGATTTGAACTTTGAAGCTCTATCCTATCCCAAGCCTCCCTC
                      ____________________________________________________________
consensus TGAAGTTTAGCAGTTGGTGGATTTGAACTTTGAAGCTCTATCCTATCCCAAGCCTCCCTC
 
. : . : . : . : . : . :
rJMSF028E02+ TTTAAAGCTTGTTTTTAGTGTGCATACGAATTGGAAACGTTCAAAGCCGACCGATTGATA
rJMFF016I08+ TTTAAAGCTTGTTTTTAGTGTGCATACGAATTGGAAACGTTCAAAGCCGACCGATTGATA
rJMFF012H16+ TTTAAAGCTTGTTTTTAGTGTGCATACGAATTGGAAACGTTCAAAGCCGACCGATTGATA
rJMFF024K13+ TTTAAAGCTTGTTTTTAGTGTGCATACGAATTGGAAACGTTCAAAGCCGACCGATTGATA
rJMFF010P01+ TTTAAAGCTTGTTTTTAGTGTGCATACGAATTGGAAACGTTCAAAGCCGACCGATTGATA
                      ____________________________________________________________
consensus TTTAAAGCTTGTTTTTAGTGTGCATACGAATTGGAAACGTTCAAAGCCGACCGATTGATA
 
. : . : . : . : . : . :
rJMSF028E02+ CTGACTGTCTTTAGGCTGCTGAGTTTCGGAAATTTTATTCCAGCTATTTATCTCTACTCT
rJMFF016I08+ CTGACTGTCTTTAGGCTGCTGAGTTTCGGAAATTTTATTCCAGCTATTTATCTCTACTCT
rJMFF012H16+ CTGACTGTCTTTAGGCTGCTGAGTTTCGGAAATTTTATTCCAGCTATTTATCTCTACTCT
rJMFF024K13+ CTGACTGTCTTTAGGCTGCTGAGTTTCGGAAATTTTATTCCAGCTATTTATCTCTACTCT
rJMFF010P01+ CTGACTGTCTTTAGGCTGCTGAGTTTCGGAAATTTTATTCCAGCTATTTATCTCTACTCT
                      ____________________________________________________________
consensus CTGACTGTCTTTAGGCTGCTGAGTTTCGGAAATTTTATTCCAGCTATTTATCTCTACTCT
 
. : . : . : . : . : . :
rJMSF028E02+ ACTATACTCCCAACAGTCCAACTCAAT
rJMFF016I08+ ACTATACTCCCAACAGTCCAACTCAATATGCAAATTAAAACACTTGTGTGAGAAATACAA
rJMFF012H16+ ACTATACTCCCAACAGTCCAACTCAATATGCAAATTAAAACACTTGTGTGAGAAATACAA
rJMFF024K13+ ACTATACTCCCAACAGTCCAACTCAATA
rJMFF010P01+ ACTATACTCCCAACAGTCCAACTCAATATGCAAATTAAAACACTTGTGTGAGAAATACAA
                      ____________________________________________________________
consensus ACTATACTCCCAACAGTCCAACTCAATATGCAAATTAAAACACTTGTGTGAGAAATACAA