clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF010P01 | Sequence | 591 | 004557 (6) | ref|XP_006363008.1| | 2e-48 | PREDICTED: endoplasmin homolog [Solanum tuberosum] | 674 | 001055 (5) | ref|XP_009798975.1| | 5e-58 | PREDICTED: heat shock protein 83 [Nicotiana sylvestris] |
JMFF012H16 | Sequence | 592 | 004557 (6) | ref|XP_006363008.1| | 1e-47 | PREDICTED: endoplasmin homolog [Solanum tuberosum] | 791 | 001055 (5) | ref|XP_009798975.1| | 6e-83 | PREDICTED: heat shock protein 83 [Nicotiana sylvestris] |
JMFF016I08 | Sequence | 594 | 004557 (6) | ref|XP_006363008.1| | 2e-48 | PREDICTED: endoplasmin homolog [Solanum tuberosum] | 676 | 001055 (5) | ref|XP_009798975.1| | 1e-58 | PREDICTED: heat shock protein 83 [Nicotiana sylvestris] |
JMFF024K13 | Sequence | 474 | 004557 (6) | ref|XP_006363008.1| | 2e-09 | PREDICTED: endoplasmin homolog [Solanum tuberosum] | 607 | 001055 (5) | ref|XP_009605137.1| | 3e-35 | PREDICTED: heat shock protein 83 [Nicotiana tomentosiformis] |
JMSF028E02 | Sequence | 666 | 004557 (6) | ref|XP_006363008.1| | 3e-56 | PREDICTED: endoplasmin homolog [Solanum tuberosum] | 735 | 001055 (5) | ref|XP_009798975.1| | 2e-80 | PREDICTED: heat shock protein 83 [Nicotiana sylvestris] |
This contig is upended
. : . : . : . : . : . :
rJMFF012H16+ CAGGAGAAGGGA
____________________________________________________________
consensus CAGGAGAAGGGA
. : . : . : . : . : . :
rJMSF028E02+ AATTTGGTCCAGCTTGTGATTGGATTAAGAAACGTTTAGGTGATAAAGT
rJMFF012H16+ GATGAACCAAGAATTTGGTCCAGCTTGTGATTGGATTAAGAAACGTTTAGGTGATAAAGT
____________________________________________________________
consensus GATGAACCAAGAATTTGGTCCAGCTTGTGATTGGATTAAGAAACGTTTAGGTGATAAAGT
. : . : . : . : . : . :
rJMSF028E02+ TGCCAGTGTACAAATCTCAAATCGTCTAAGCTCGTCTCCTTGTGTTCTAGTAACTGGAAA
rJMFF016I08+ TCTAGTAACTGGAAA
rJMFF012H16+ TGCCAGTGTACAAATCTCAAATCGTCTAAGCTCGTCTCCTTGTGTTCTAGTAACTGGAAA
rJMFF010P01+ TCTAGTAACTGGAAA
____________________________________________________________
consensus TGCCAGTGTACAAATCTCAAATCGTCTAAGCTCGTCTCCTTGTGTTCTAGTAACTGGAAA
. : . : . : . : . : . :
rJMSF028E02+ GTTTGGTTGGTCTGCCAACATGGAAAGGCTGATGAAGGCCCAAAGTGTTGGTGATAACTC
rJMFF016I08+ GTTTGGTTGGTCTGCCAACATGGAAAGGCTGATGAAGGCCCAAAGTGTTGGTGATAACTC
rJMFF012H16+ GTTTGGTTGGTCTGCCAACATGGAAAGGCTGATGAAGGCCCAAAGTGTTGGTGATAACTC
rJMFF024K13+ GGAAAGGCTGATGAAGGCCCAAAGTGTTGGTGATAACTC
rJMFF010P01+ GTTTGGTTGGTCTGCCAACATGGAAAGGCTGATGAAGGCCCAAAGTGTTGGTGATAACTC
____________________________________________________________
consensus GTTTGGTTGGTCTGCCAACATGGAAAGGCTGATGAAGGCCCAAAGTGTTGGTGATAACTC
. : . : . : . : . : . :
rJMSF028E02+ CAGCTTGGCATTTATGAAAAGCAGAAGAGTCTT-TGAGATAAATCCTAACCACCCAATCA
rJMFF016I08+ CAGCTTGGCATTTATGAAAAGCAGAAGAGTCTT-TGAGATAAATCCTAACCACCCAATCA
rJMFF012H16+ CAGCTTGGCATTTATGAAAAGCAGAAGAGTCTT-TGAGATAAATCCTAACCACCCAATCA
rJMFF024K13+ CAGCTTGGCATTTATGAAAAGCAGAAGAGTNTTNTGAGATAAATCCTANCCACCCAATCA
rJMFF010P01+ CAGCTTGGCATTTATGAAAAGCAGAAGAGTCTT-TGAGATAAATCCTAACCACCCAATCA
____________________________________________________________
consensus CAGCTTGGCATTTATGAAAAGCAGAAGAGTCTT-TGAGATAAATCCTAACCACCCAATCA
. : . : . : . : . : . :
rJMSF028E02+ TCAGAACTTTGAATGAAGCATCCAAGAATAGTCCAGATGATGAAGAAGCCCTGAGAGCAA
rJMFF016I08+ TCAGAACTTTGAATGAAGCATCCAAGAATAGTCCAGATGATGAAGAAGCCCTGAGAGCAA
rJMFF012H16+ TCAGAACTTTGAATGAAGCATCCAAGAATAGTCCAGATGATGAAGAAGCCCTGAGAGCAA
rJMFF024K13+ TCAGAACTTTGAATGAAGCATCCAAGAATAGTCCAGATGATGAAGAAGCCCTGAGAGCAA
rJMFF010P01+ TCAGAACTTTGAATGAAGCATCCAAGAATAGTCCAGATGATGAAGAAGCCCTGAGAGCAA
____________________________________________________________
consensus TCAGAACTTTGAATGAAGCATCCAAGAATAGTCCAGATGATGAAGAAGCCCTGAGAGCAA
. : . : . : . : . : . :
rJMSF028E02+ TTGATCTTTTGTATGACGCAGCTTTGGTCTCTAGTGGTTTCACTCCCGATAATCCCGCTG
rJMFF016I08+ TTGATCTTTTGTATGACGCAGCTTTGGTCTCTAGTGGTTTCACTCCCGATAATCCCGCTG
rJMFF012H16+ TTGATCTTTTGTATGACGCAGCTTTGGTCTCTAGTGGTTTCACTCCCGATAATCCCGCTG
rJMFF024K13+ TTGATCTTTTGTATGACGCAGCTTTGGTCTCTAGTGGTTTCACTCCCGATAATCCCGCTG
rJMFF010P01+ TTGATCTTTTGTATGACGCAGCTTTGGTCTCTAGTGGTTTCACTCCCGATAATCCCGCTG
____________________________________________________________
consensus TTGATCTTTTGTATGACGCAGCTTTGGTCTCTAGTGGTTTCACTCCCGATAATCCCGCTG
. : . : . : . : . : . :
rJMSF028E02+ AGCTTGGAGGTAAGATCTATGGCATGATGAACATGGCTCTATCAGGCAAATGGGGAGCTT
rJMFF016I08+ AGCTTGGAGGTAAGATCTATGGCATGATGAACATGGCTCTATCAGGCAAATGGGGAGCTT
rJMFF012H16+ AGCTTGGAGGTAAGATCTATGGCATGATGAACATGGCTCTATCAGGCAAATGGGGAGCTT
rJMFF024K13+ AGCTTGGAGGTAAGATCTATGGCATGATGAACATGGCTCTATCAGGCAAATGGGGAGCTT
rJMFF010P01+ AGCTTGGAGGTAAGATCTATGGCATGATGAACATGGCTCTATCAGGCAAATGGGGAGCTT
____________________________________________________________
consensus AGCTTGGAGGTAAGATCTATGGCATGATGAACATGGCTCTATCAGGCAAATGGGGAGCTT
. : . : . : . : . : . :
rJMSF028E02+ CAGATGGGTTTCAGCAATATGCGAACCCCCAAACACAGATACCCGAAACAGTTGAGGCTG
rJMFF016I08+ CAGATGGGTTTCAGCAATATGCGAACCCCCAAACACAGATACCCGAAACAGTTGAGGCTG
rJMFF012H16+ CAGATGGGTTTCAGCAATATGCGAACCCCCAAACACAGATACCCGAAACAGTTGAGGCTG
rJMFF024K13+ CAGATGGGTTTCAGCAATATGCGAACCCCCAAACACAGATACCCGAAACAGTTGAGGCTG
rJMFF010P01+ CAGATGGGTTTCAGCAATATGCGAACCCCCAAACACAGATACCCGAAACAGTTGAGGCTG
____________________________________________________________
consensus CAGATGGGTTTCAGCAATATGCGAACCCCCAAACACAGATACCCGAAACAGTTGAGGCTG
. : . : . : . : . : . :
rJMSF028E02+ AGGTGGTGGAGCCTGCCCAAGTCAGTGGCCAAAAGTAAACTAAGTATATGACGACCTAGT
rJMFF016I08+ AGGTGGTGGAGCCTGCCCAAGTCAGTGGCCAAAAGTAAACTAAGTATATGACGACCTAGT
rJMFF012H16+ AGGTGGTGGAGCCTGCCCAAGTCAGTGGCCAAAAGTAAACTAAGTATATGACGACCTAGT
rJMFF024K13+ AGGTGGTGGAGCCTGCCCAAGTCAGTGGCCAAAAGTAAACTAAGTATATGACGACCTAGT
rJMFF010P01+ AGGTGGTGGAGCCTGCCCAAGTCAGTGGCCAAAAGTAAACTAAGTATATGACGACCTAGT
____________________________________________________________
consensus AGGTGGTGGAGCCTGCCCAAGTCAGTGGCCAAAAGTAAACTAAGTATATGACGACCTAGT
. : . : . : . : . : . :
rJMSF028E02+ TGAAGTTTAGCAGTTGGTGGATTTGAACTTTGAAGCTCTATCCTATCCCAAGCCTCCCTC
rJMFF016I08+ TGAAGTTTAGCAGTTGGTGGATTTGAACTTTGAAGCTCTATCCTATCCCAAGCCTCCCTC
rJMFF012H16+ TGAAGTTTAGCAGTTGGTGGATTTGAACTTTGAAGCTCTATCCTATCCCAAGCCTCCCTC
rJMFF024K13+ TGAAGTTTAGCAGTTGGTGGATTTGAACTTTGAAGCTCTATCCTATCCCAAGCCTCCCTC
rJMFF010P01+ TGAAGTTTAGCAGTTGGTGGATTTGAACTTTGAAGCTCTATCCTATCCCAAGCCTCCCTC
____________________________________________________________
consensus TGAAGTTTAGCAGTTGGTGGATTTGAACTTTGAAGCTCTATCCTATCCCAAGCCTCCCTC
. : . : . : . : . : . :
rJMSF028E02+ TTTAAAGCTTGTTTTTAGTGTGCATACGAATTGGAAACGTTCAAAGCCGACCGATTGATA
rJMFF016I08+ TTTAAAGCTTGTTTTTAGTGTGCATACGAATTGGAAACGTTCAAAGCCGACCGATTGATA
rJMFF012H16+ TTTAAAGCTTGTTTTTAGTGTGCATACGAATTGGAAACGTTCAAAGCCGACCGATTGATA
rJMFF024K13+ TTTAAAGCTTGTTTTTAGTGTGCATACGAATTGGAAACGTTCAAAGCCGACCGATTGATA
rJMFF010P01+ TTTAAAGCTTGTTTTTAGTGTGCATACGAATTGGAAACGTTCAAAGCCGACCGATTGATA
____________________________________________________________
consensus TTTAAAGCTTGTTTTTAGTGTGCATACGAATTGGAAACGTTCAAAGCCGACCGATTGATA
. : . : . : . : . : . :
rJMSF028E02+ CTGACTGTCTTTAGGCTGCTGAGTTTCGGAAATTTTATTCCAGCTATTTATCTCTACTCT
rJMFF016I08+ CTGACTGTCTTTAGGCTGCTGAGTTTCGGAAATTTTATTCCAGCTATTTATCTCTACTCT
rJMFF012H16+ CTGACTGTCTTTAGGCTGCTGAGTTTCGGAAATTTTATTCCAGCTATTTATCTCTACTCT
rJMFF024K13+ CTGACTGTCTTTAGGCTGCTGAGTTTCGGAAATTTTATTCCAGCTATTTATCTCTACTCT
rJMFF010P01+ CTGACTGTCTTTAGGCTGCTGAGTTTCGGAAATTTTATTCCAGCTATTTATCTCTACTCT
____________________________________________________________
consensus CTGACTGTCTTTAGGCTGCTGAGTTTCGGAAATTTTATTCCAGCTATTTATCTCTACTCT
. : . : . : . : . : . :
rJMSF028E02+ ACTATACTCCCAACAGTCCAACTCAAT
rJMFF016I08+ ACTATACTCCCAACAGTCCAACTCAATATGCAAATTAAAACACTTGTGTGAGAAATACAA
rJMFF012H16+ ACTATACTCCCAACAGTCCAACTCAATATGCAAATTAAAACACTTGTGTGAGAAATACAA
rJMFF024K13+ ACTATACTCCCAACAGTCCAACTCAATA
rJMFF010P01+ ACTATACTCCCAACAGTCCAACTCAATATGCAAATTAAAACACTTGTGTGAGAAATACAA
____________________________________________________________
consensus ACTATACTCCCAACAGTCCAACTCAATATGCAAATTAAAACACTTGTGTGAGAAATACAA